diff --git a/containers/tefca-viewer/flyway/sql/V01_03__insert_hardcoded_values.sql b/containers/tefca-viewer/flyway/sql/V01_03__insert_hardcoded_values.sql index 152ac18a3d..70d1fcd29a 100644 --- a/containers/tefca-viewer/flyway/sql/V01_03__insert_hardcoded_values.sql +++ b/containers/tefca-viewer/flyway/sql/V01_03__insert_hardcoded_values.sql @@ -8,15 +8,15 @@ INSERT INTO conditions VALUES('3','DIBBs Local Code System','Social Determinants INSERT INTO valuesets VALUES('1_20240909','1','20240909','Newborn Screening','DIBBs','lotc'); -- Cancer (Leukemia) valueset(s) -INSERT INTO valuesets VALUES('2_20240909','2','20240909','Cancer (Leukemia)','DIBBs','dxtc'); -INSERT INTO valuesets VALUES('3_20240909','3','20240909','Cancer Leukemia','DIBBs','mrtc'); +INSERT INTO valuesets VALUES('2_20240909','2','20240909','Cancer (Leukemia) Diagnosis Problem','DIBBs','dxtc'); +INSERT INTO valuesets VALUES('3_20240909','3','20240909','Cancer (Leukemia) Medication','DIBBs','mrtc'); -- Missing Syphilis valueset(s) INSERT INTO valuesets VALUES('4_20240909','4','20240909','Syphilis Medication','DIBBs','mrtc'); INSERT INTO valuesets VALUES('5_20240909','5','20240909','Syphilis Diagnosis Problem','DIBBs','dxtc'); INSERT INTO valuesets VALUES('6_20240909','6','20240909','Suspected Syphilis Disorder','DIBBs','sdtc'); --- Missing Gonorhea valueset(s) +-- Missing Gonorrhea valueset(s) INSERT INTO valuesets VALUES('7_20240909','7','20240909','Gonorrhea Medication','DIBBs','mrtc'); INSERT INTO valuesets VALUES('8_20240909','8','20240909','Gonorrhea Diagnosis Problem','DIBBs','dxtc'); INSERT INTO valuesets VALUES('9_20240909','9','20240909','Gonorrhea Lab Organism','DIBBs','lotc'); @@ -27,6 +27,9 @@ INSERT INTO valuesets VALUES('11_20240910','11','20240910','Chlamydia Medication INSERT INTO valuesets VALUES('12_20240910','12','20240910','Chlamydia Lab Result','DIBBs','lrtc'); INSERT INTO valuesets VALUES('13_20240910','13','20240910','Suspected Chlamydia Diagnosis','DIBBs','sdtc'); +-- Cancer (CAP) valueset(s) +INSERT INTO valuesets VALUES('14_20240923','14','20240923','Cancer (Leukemia) Lab Result','DIBBs','lrtc'); +INSERT INTO valuesets VALUES('15_20240923','15','20240923','Suspected Cancer (Leukemia) Diagnosis','DIBBs','sdtc'); -- Newborn Screening concepts INSERT INTO concepts VALUES('1_73700-7','73700-7','http://loinc.org','CCHD newborn screening interpretation','737007','2024-09'); @@ -61,12 +64,23 @@ INSERT INTO concepts VALUES('1_1649987','1649987','http://www.nlm.nih.gov/resear INSERT INTO concepts VALUES('1_72828-7','72828-7','http://loinc.org','Chlamydia trachomatis and Neisseria gonorrhoeae DNA panel - Specimen','728287','2024-09'); INSERT INTO concepts VALUES('1_2339001','2339001','http://snomed.info/sct','Sexual overexposure','2339001','2024-09'); +-- Cancer (Leukemia) concepts from CAP +INSERT INTO concepts VALUES('1_21908-9','21908-9','http://loinc.org','Stage group.clinical Cancer','219089','2024-09'); +INSERT INTO concepts VALUES('1_36929009','36929009','http://snomed.info/sct','Stage II (localized)','36929009','2024-09'); +INSERT INTO concepts VALUES('1_60568-3','60568-3','http://loinc.org','Pathology Synoptic report','605683','2024-09'); +INSERT INTO concepts VALUES('1_30000.100004300','30000.100004300','http://cap.org/eCC','MSH2 Result','30000.100004300','2024-09'); +INSERT INTO concepts VALUES('1_1255068005','1255068005','http://snomed.info/sct','Presence of DNA mismatch repair protein MSH2 in primary malignant neoplasm of colon by immunohistochemistry (observable entity)','1255068005','2024-09'); +INSERT INTO concepts VALUES('1_9484.100004300','9484.100004300','http://cap.org/eCC','RESULTS','9484.100004300','2024-09'); +INSERT INTO concepts VALUES('1_363346000','363346000','http://snomed.info/sct','Malignant neoplastic disease (disorder)','363346000','2024-09'); +INSERT INTO concepts VALUES('1_418689008','418689008','http://snomed.info/sct','Allergy to sulfonamide','418689008','2024-09'); + + -- Newborn Screening condition to valueset mappings INSERT INTO condition_to_valueset VALUES('1514','1','1_20240909','DIBBs'); -- Cancer (Leukemia) condition to valueset mappings INSERT INTO condition_to_valueset VALUES('1515','2','2_20240909','DIBBs'); -INSERT INTO condition_to_valueset VALUES('1516','3','3_20240909','DIBBs'); +INSERT INTO condition_to_valueset VALUES('1516','2','3_20240909','DIBBs'); -- Missing Syphilis condition to valueset mappings INSERT INTO condition_to_valueset VALUES('1517','35742006','4_20240909','DIBBs'); @@ -84,6 +98,10 @@ INSERT INTO condition_to_valueset VALUES('1524','240589008','11_20240910','DIBBs INSERT INTO condition_to_valueset VALUES('1525','240589008','12_20240910','DIBBs'); INSERT INTO condition_to_valueset VALUES('1526','240589008','13_20240910','DIBBs'); +-- Missing Cancer condition to valueset mappings (CAP) +INSERT INTO condition_to_valueset VALUES('1527','2','14_20240923','DIBBs'); +INSERT INTO condition_to_valueset VALUES('1528','2','15_20240923','DIBBs'); + -- Newborn Screening valueset to concept mappings INSERT INTO valueset_to_concept VALUES('45274','1_20240909','1_73700-7'); INSERT INTO valueset_to_concept VALUES('45275','1_20240909','1_73698-3'); @@ -130,6 +148,15 @@ INSERT INTO valueset_to_concept VALUES('45307','12_20240910','1_72828-7'); INSERT INTO valueset_to_concept VALUES('45308','13_20240910','1_72531000052105'); INSERT INTO valueset_to_concept VALUES('45309','13_20240910','1_2339001'); +-- Missing Cancer valueset to concept mapping (CAP) +INSERT INTO valueset_to_concept VALUES('45310','2_20240909','1_21908-9'); +INSERT INTO valueset_to_concept VALUES('45311','2_20240909','1_36929009'); +INSERT INTO valueset_to_concept VALUES('45312','2_20240909','1_60568-3'); +INSERT INTO valueset_to_concept VALUES('45313','14_20240923','1_30000.100004300'); +INSERT INTO valueset_to_concept VALUES('45314','14_20240923','1_1255068005'); +INSERT INTO valueset_to_concept VALUES('45315','14_20240923','1_9484.100004300'); +INSERT INTO valueset_to_concept VALUES('45316','15_20240923','1_363346000'); +INSERT INTO valueset_to_concept VALUES('45317','2_20240909','1_418689008');