From de72d003558777e17335808fe9964a61ba0d1a81 Mon Sep 17 00:00:00 2001
From: caufieldjh <j.harry.caufield@gmail.com>
Date: Tue, 1 Oct 2024 14:37:34 -0400
Subject: [PATCH 1/3] Include total node count and edge counts in
 total_stats.yaml

---
 src/kg_bioportal/transformer.py | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/src/kg_bioportal/transformer.py b/src/kg_bioportal/transformer.py
index b1db303..ab1e27f 100644
--- a/src/kg_bioportal/transformer.py
+++ b/src/kg_bioportal/transformer.py
@@ -119,12 +119,23 @@ def transform_all(self, compress: bool) -> None:
         # Write total stats to a yaml
         logging.info("Writing total stats to total_stats.yaml.")
         # Get the count of successful transforms
+        # Plus total node and edge counts
         success_count = 0
         for onto in onto_log:
             if onto_log[onto]["status"]:
                 success_count += 1
         with open(os.path.join(self.output_dir, "total_stats.yaml"), "w") as f:
             f.write("totalcount: " + str(success_count) + "\n")
+            f.write(
+                "totalnodecount: "
+                + str(sum([onto_log[onto]["nodecount"] for onto in onto_log]))
+                + "\n"
+            )
+            f.write(
+                "totaledgecount: "
+                + str(sum([onto_log[onto]["edgecount"] for onto in onto_log]))
+                + "\n"
+            )
 
         # Dump onto_log to a yaml
         # Rearrange it a bit first

From 626e32f40c32bcca4ed256767ed20722f8ced9bd Mon Sep 17 00:00:00 2001
From: caufieldjh <j.harry.caufield@gmail.com>
Date: Tue, 1 Oct 2024 14:43:03 -0400
Subject: [PATCH 2/3] Add node and edge count fields to index

---
 docs/index.html | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/docs/index.html b/docs/index.html
index d4d590b..31ea568 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -15,6 +15,8 @@ <h3>Learn more about KG-Bioportal</h3>
       <h3>KG-Bioportal Overview</h3>
       <p>The collection includes graph files for {{ site.totalcount }} ontologies. </p>
 
+      <p>In all, this includes {{site.totalnodecount }} ontology classes as nodes and {{site.totaledgecount}} relations between classes as edges.</p>
+
       {% include fig1.html %}
       {% include fig2.html %}
       <br>

From 846754d1e53c021fb4a4999047772b65988fbbff Mon Sep 17 00:00:00 2001
From: caufieldjh <j.harry.caufield@gmail.com>
Date: Tue, 1 Oct 2024 14:45:03 -0400
Subject: [PATCH 3/3] Update site config

---
 docs/_config.yml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/docs/_config.yml b/docs/_config.yml
index f119c1f..497c0ec 100644
--- a/docs/_config.yml
+++ b/docs/_config.yml
@@ -53,6 +53,8 @@ plugins:
 
 # Ontology status table goes under here.
 totalcount: 1050
+totalnodecount: 10509205
+totaledgecount: 20055264
 ontologies:
 - edgecount: 555
   id: REGN_BRO