From 274e25f5bfb8ad8c0b46d2e8a658ac6633744c53 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Thu, 29 Jun 2023 08:33:34 +0100 Subject: [PATCH 1/2] Addresses #2044 retina cell type syns --- src/ontology/cl-edit.owl | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 51bfd8fc5..2980babe5 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -4610,6 +4610,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "BTO:0000771") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "CALOHA:TS-2027") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000126 "FMA:54538") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000126 "macrogliocyte") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000126 "macroglia") AnnotationAssertion(rdfs:label obo:CL_0000126 "macroglial cell") SubClassOf(obo:CL_0000126 obo:CL_0000125) SubClassOf(obo:CL_0000126 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000339)) @@ -4650,9 +4651,9 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000129 "FMA:54539") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000129 "FMA:54540") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000129 "brain-resident macrophage") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "hortega cells") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000129 "microglia") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "microgliocyte") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000129 "MF.microglia.CNS") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000129 "microglia") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23616747") rdfs:comment obo:CL_0000129 "Unlike macroglial cells, microglial cells arise from hematopoietic stem cells in the yolk sac during early embryogenesis that populate the central nervous system. They derive from embryonic mesoderm and are not from neuroectoderm where glioblast develops from. Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD11c-high, CD14-negative, CD19-negative, CD45-low, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive.") AnnotationAssertion(rdfs:label obo:CL_0000129 "microglial cell") EquivalentClasses(obo:CL_0000129 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087))) @@ -8184,6 +8185,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "BTO:0004044") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "FMA:67766") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000561 "amacrine neuron") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000561 "ACs") AnnotationAssertion(rdfs:label obo:CL_0000561 "amacrine cell") SubClassOf(obo:CL_0000561 obo:CL_0000099) SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000966)) @@ -8296,6 +8298,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017949") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "BTO:0001036") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "CALOHA:TS-0866") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "FMA:67748") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") oboInOwl:hasRelatedSynonym obo:CL_0000573 "cone") AnnotationAssertion(rdfs:label obo:CL_0000573 "retinal cone cell") SubClassOf(obo:CL_0000573 obo:CL_0010009) SubClassOf(obo:CL_0000573 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002672)) @@ -8589,6 +8592,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017948") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "BTO:0001024") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "CALOHA:TS-0870") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "FMA:67747") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "GSE148077") oboInOwl:hasRelatedSynonym obo:CL_0000604 "rod") AnnotationAssertion(rdfs:label obo:CL_0000604 "retinal rod cell") SubClassOf(obo:CL_0000604 obo:CL_0010009) SubClassOf(obo:CL_0000604 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002672)) @@ -8878,6 +8882,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl: AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000636 "BTO:0003064") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Muller glia") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Müller cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "E-MTAB-7316") Annotation(oboInOwl:hasDbXref "doi:10.21769/BioProtoc.4179") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasExactSynonym obo:CL_0000636 "Muller cell") AnnotationAssertion(rdfs:label obo:CL_0000636 "Mueller cell") SubClassOf(obo:CL_0000636 obo:CL_0000681) SubClassOf(obo:CL_0000636 obo:CL_0009004) @@ -9754,9 +9759,10 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:dph") obo:IAO_0000115 obo AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "BTO:0001800") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "FMA:67765") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "MESH:D012165") -AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "RGC") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "gangliocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "ganglion cell of retina") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGC") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGCs") AnnotationAssertion(rdfs:label obo:CL_0000740 "retinal ganglion cell") SubClassOf(obo:CL_0000740 obo:CL_0000117) SubClassOf(obo:CL_0000740 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000966)) @@ -9793,6 +9799,7 @@ SubClassOf(obo:CL_0000744 obo:CL_0000138) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0195088433") obo:IAO_0000115 obo:CL_0000745 "A neuron that laterally connects other neurons in the inner nuclear layer of the retina.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000745 "BTO:0004120") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000745 "horizontal cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HCs") AnnotationAssertion(rdfs:label obo:CL_0000745 "retina horizontal cell") SubClassOf(obo:CL_0000745 obo:CL_0000099) SubClassOf(obo:CL_0000745 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0003902)) @@ -9827,6 +9834,7 @@ SubClassOf(obo:CL_0000747 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005005)) # Class: obo:CL_0000748 (retinal bipolar neuron) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000748 "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BPs") AnnotationAssertion(rdfs:label obo:CL_0000748 "retinal bipolar neuron") EquivalentClasses(obo:CL_0000748 ObjectIntersectionOf(obo:CL_0000103 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000966))) SubClassOf(obo:CL_0000748 obo:CL_0009004) @@ -21429,6 +21437,7 @@ AnnotationAssertion( obo:CL_0004217 "https AnnotationAssertion( obo:CL_0004217 "https://orcid.org/0000-0002-5260-9315") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0004217 "A Horizontal Cell") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0004217 "cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004217 "H1") AnnotationAssertion(oboInOwl:id obo:CL_0004217 "CL:0004217") AnnotationAssertion(rdfs:label obo:CL_0004217 "H1 horizontal cell") SubClassOf(obo:CL_0004217 obo:CL_0000745) @@ -21441,6 +21450,7 @@ AnnotationAssertion( obo:CL_0004218 "https AnnotationAssertion( obo:CL_0004218 "https://orcid.org/0000-0002-5260-9315") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0004218 "B Horizontal Cell") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0004218 "cell") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004218 "H2") AnnotationAssertion(oboInOwl:id obo:CL_0004218 "CL:0004218") AnnotationAssertion(rdfs:label obo:CL_0004218 "H2 horizontal cell") SubClassOf(obo:CL_0004218 obo:CL_0000745) From 50ed3e7f9aa9b879d640bd19db18f392dd8ba1c4 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Thu, 29 Jun 2023 10:12:30 +0100 Subject: [PATCH 2/2] add doi dbxrefs --- src/ontology/cl-edit.owl | 24 ++++++++++++++---------- 1 file changed, 14 insertions(+), 10 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 2980babe5..f36ac56b2 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -4653,7 +4653,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000129 "brain-resident macr AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "hortega cells") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "http://www.copewithcytokines.de/") oboInOwl:hasExactSynonym obo:CL_0000129 "microgliocyte") AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_0000129 "MF.microglia.CNS") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000129 "microglia") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000129 "microglia") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:23616747") rdfs:comment obo:CL_0000129 "Unlike macroglial cells, microglial cells arise from hematopoietic stem cells in the yolk sac during early embryogenesis that populate the central nervous system. They derive from embryonic mesoderm and are not from neuroectoderm where glioblast develops from. Markers: Mouse: CD11b+, F4/80+, CD68+. They represent ~12% of the cells in the CNS, but they are not uniformly distributed within the CNS. A normal adult mouse brain has approximately 3.5x10e6 microglia. Microglia are also reportedly CD3-negative, CD4-positive, CD8-negative, CD11b-positive, CD11c-high, CD14-negative, CD19-negative, CD45-low, CD56-negative, CD163-negative, CD200R-positive, CD281-positive, CD282-positive, CD283-positive, CD284-positive, CD285-positive, CD286-positive, CD287-positive, CD288-positive, CD289-positive, Gr1-negative, nestin-positive, and PU.1-positive.") AnnotationAssertion(rdfs:label obo:CL_0000129 "microglial cell") EquivalentClasses(obo:CL_0000129 ObjectIntersectionOf(obo:CL_0000125 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001017) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001813) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000002064) ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0045087))) @@ -8185,7 +8185,8 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "BTO:0004044") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000561 "FMA:67766") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000561 "amacrine neuron") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000561 "ACs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000561 "ACs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000561 "AC") AnnotationAssertion(rdfs:label obo:CL_0000561 "amacrine cell") SubClassOf(obo:CL_0000561 obo:CL_0000099) SubClassOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000966)) @@ -8298,7 +8299,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017949") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "BTO:0001036") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "CALOHA:TS-0866") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000573 "FMA:67748") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") oboInOwl:hasRelatedSynonym obo:CL_0000573 "cone") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") oboInOwl:hasRelatedSynonym obo:CL_0000573 "cone") AnnotationAssertion(rdfs:label obo:CL_0000573 "retinal cone cell") SubClassOf(obo:CL_0000573 obo:CL_0010009) SubClassOf(obo:CL_0000573 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002672)) @@ -8592,7 +8593,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D017948") obo:IAO_000011 AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "BTO:0001024") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "CALOHA:TS-0870") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000604 "FMA:67747") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "GSE148077") oboInOwl:hasRelatedSynonym obo:CL_0000604 "rod") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") oboInOwl:hasRelatedSynonym obo:CL_0000604 "rod") AnnotationAssertion(rdfs:label obo:CL_0000604 "retinal rod cell") SubClassOf(obo:CL_0000604 obo:CL_0010009) SubClassOf(obo:CL_0000604 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002672)) @@ -8880,9 +8881,9 @@ SubClassOf(obo:CL_0000635 obo:CL_0002165) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:NV") Annotation(oboInOwl:hasDbXref "PMID:21911394") obo:IAO_0000115 obo:CL_0000636 "Astrocyte-like radial glial cell that extends vertically throughout the retina, with the nucleus are usually in the middle of the inner nuclear layer.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000636 "BTO:0003064") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "E-MTAB-7316") Annotation(oboInOwl:hasDbXref "doi:10.21769/BioProtoc.4179") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasExactSynonym obo:CL_0000636 "Muller cell") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Muller glia") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000636 "Müller cell") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "E-MTAB-7316") Annotation(oboInOwl:hasDbXref "doi:10.21769/BioProtoc.4179") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasExactSynonym obo:CL_0000636 "Muller cell") AnnotationAssertion(rdfs:label obo:CL_0000636 "Mueller cell") SubClassOf(obo:CL_0000636 obo:CL_0000681) SubClassOf(obo:CL_0000636 obo:CL_0009004) @@ -9761,8 +9762,8 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "FMA:67765") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000740 "MESH:D012165") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "gangliocyte") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000740 "ganglion cell of retina") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGC") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGCs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGC") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000740 "RGCs") AnnotationAssertion(rdfs:label obo:CL_0000740 "retinal ganglion cell") SubClassOf(obo:CL_0000740 obo:CL_0000117) SubClassOf(obo:CL_0000740 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000966)) @@ -9799,7 +9800,8 @@ SubClassOf(obo:CL_0000744 obo:CL_0000138) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ISBN:0195088433") obo:IAO_0000115 obo:CL_0000745 "A neuron that laterally connects other neurons in the inner nuclear layer of the retina.") AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000745 "BTO:0004120") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000745 "horizontal cell") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HCs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HCs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000745 "HC") AnnotationAssertion(rdfs:label obo:CL_0000745 "retina horizontal cell") SubClassOf(obo:CL_0000745 obo:CL_0000099) SubClassOf(obo:CL_0000745 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0003902)) @@ -9835,6 +9837,8 @@ SubClassOf(obo:CL_0000747 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0005005)) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:14689473") obo:IAO_0000115 obo:CL_0000748 "A bipolar neuron found in the retina and having connections with photoreceptors cells and neurons in the inner plexiform layer.") AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE137537") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BPs") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BC") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0000748 "BCs") AnnotationAssertion(rdfs:label obo:CL_0000748 "retinal bipolar neuron") EquivalentClasses(obo:CL_0000748 ObjectIntersectionOf(obo:CL_0000103 ObjectSomeValuesFrom(obo:RO_0002100 obo:UBERON_0000966))) SubClassOf(obo:CL_0000748 obo:CL_0009004) @@ -21437,7 +21441,7 @@ AnnotationAssertion( obo:CL_0004217 "https AnnotationAssertion( obo:CL_0004217 "https://orcid.org/0000-0002-5260-9315") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0004217 "A Horizontal Cell") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0004217 "cell") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004217 "H1") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004217 "H1") AnnotationAssertion(oboInOwl:id obo:CL_0004217 "CL:0004217") AnnotationAssertion(rdfs:label obo:CL_0004217 "H1 horizontal cell") SubClassOf(obo:CL_0004217 obo:CL_0000745) @@ -21450,7 +21454,7 @@ AnnotationAssertion( obo:CL_0004218 "https AnnotationAssertion( obo:CL_0004218 "https://orcid.org/0000-0002-5260-9315") AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0004218 "B Horizontal Cell") AnnotationAssertion(oboInOwl:hasOBONamespace obo:CL_0004218 "cell") -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004218 "H2") +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GSE148077") Annotation(oboInOwl:hasDbXref "doi:10.1038/s41598-020-66092-9") Annotation(oboInOwl:hasSynonymType ) oboInOwl:hasRelatedSynonym obo:CL_0004218 "H2") AnnotationAssertion(oboInOwl:id obo:CL_0004218 "CL:0004218") AnnotationAssertion(rdfs:label obo:CL_0004218 "H2 horizontal cell") SubClassOf(obo:CL_0004218 obo:CL_0000745)