diff --git a/code/update_json.py b/code/update_json.py new file mode 100644 index 0000000000..fa589c8d65 --- /dev/null +++ b/code/update_json.py @@ -0,0 +1,108 @@ +import os +import json +import argparse + + +def get_parser(): + parser = argparse.ArgumentParser( + description="Adds spatial reference information to json sidecars." ) + parser.add_argument('-d', + required=True, help='Directory to process JSON files in') + parser.add_argument('-r', + default='0.8x0.8x0.8', + help='Resampling factor to add to SpatialReference') + + return parser + + +def create_json_file(nii_gz_files, resampling_factor): + """Creates a JSON file listing all .nii.gz files and includes the resampling factor. + + Args: + nii_gz_files (list): A list of paths to .nii.gz files. + """ + data = { + #"SpatialReference": { + # "Orientation": "RPI", + # "Resampling": resampling_factor, + # }, + "GeneratedBy":[ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + #"Author": "Paul Bautin", + #"Date": "2020-07-30 11:57:54", + "Description": "Mean image across directions after motion correction" + }] + } + for file in nii_gz_files: + output_path = file.replace('.nii.gz', '.json') + with open(output_path, 'w', encoding='utf-8') as file: + json.dump(data, file, indent=4) + + +def add_spatial_reference(file_path, resampling_factor): + """Adds the SpatialReference field to a JSON file. + + Args: + file_path (str): The path to the JSON file. + """ + with open(file_path, 'r+', encoding='utf-8') as file: + # Load the existing data + data = json.load(file) + + # Add the "SpatialReference" field + data["SpatialReference"] = { + "Resampling": resampling_factor, + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } + + # Reset file pointer to the beginning and truncate the file + file.seek(0) + file.truncate() + + # Write the modified data back to the file + json.dump(data, file, indent=4) + + +def find_nii_gz_files(directory): + """Finds all .nii.gz files in a directory and its subdirectories. + + Args: + directory (str): The root directory to start the search from. + + Returns: + list: A list of paths to the .nii.gz files found. + """ + nii_gz_files = [] + for root, _, files in os.walk(directory): + for file in files: + if ('rec-average_dwi.nii.gz' in file): + nii_gz_files.append(os.path.join(root, file)) + + return nii_gz_files + + +def process_directory(directory, resampling_factor): + """Recursively processes directories to find and update JSON files. + + Args: + directory (str): The root directory to start the search from. + """ + for root, _, files in os.walk(directory): + for file in files: + if ('T2w' in file) and ('.json' in file): + file_path = os.path.join(root, file) + add_spatial_reference(file_path, resampling_factor) + print(f"Updated {file_path}") + +def main(): + parser = get_parser() + args = parser.parse_args() + #process_directory(args.d, args.r) + nii_gz_files = find_nii_gz_files(args.d) + create_json_file(nii_gz_files, args.r) + +if __name__ == "__main__": + main() \ No newline at end of file diff --git a/derivatives/data_preprocessed/README.md b/derivatives/data_preprocessed/README.md new file mode 100644 index 0000000000..a0dcede884 --- /dev/null +++ b/derivatives/data_preprocessed/README.md @@ -0,0 +1,18 @@ +This folder contains the preprocessed images using [process_data.sh](https://github.com/spine-generic/spine-generic/blob/v2.7/process_data.sh). The preprocessing steps include: + +T2w: + * Resampling to 0.8x0.8x0.8 mm + * Reorientation to RPI +T1w: + * Resampling to 1x1x1 mm + * Reorientation to RPI +T2star: + * Reorientation to RPI + * Root-mean square across 4th dimension (if exists) + +MTS (flip-1_mt-on & flip-2_mt-off): + * Reorientation to RPI + +DWI: + * Motion correction + * Avreage across 4th dimension diff --git a/derivatives/data_preprocessed/dataset_description.json b/derivatives/data_preprocessed/dataset_description.json new file mode 100644 index 0000000000..f5709f202b --- /dev/null +++ b/derivatives/data_preprocessed/dataset_description.json @@ -0,0 +1,101 @@ +{ + "Name": "Spinal Cord MRI Public Database (Multi-subjects)", + "BIDSVersion": "1.2.0", + "License": "CC0", + "Authors": [ + "J. Cohen-Adad", + "M. Abramovic", + "C. Arneitz", + "L. Barlow", + "B. De Leener", + "J. Doyon", + "F. Eippert", + "J. Finsterbusch", + "A. Hagiwara", + "K. Kamiya", + "H. Karbasforoushan", + "A. Khatibi", + "N. Kinany", + "S. Kusmia", + "C. Laule", + "T. Leutritz", + "E. Martinez-Heras", + "D. Papp", + "M. Seif", + "Y. Suzuki", + "G. Tackley", + "A. Tinnermann", + "N. Weiskopf", + "R. Wise", + "A. V. Dvorak", + "S. Kolind", + "S. Smith", + "B. Landman", + "K. O\u2019Grady", + "A. Combes", + "P. Freund", + "Y. Kong", + "Y. Liu", + "Y. Duan", + "T. Hor\u00e1k", + "P. Kudli\u010dka", + "J. Valo\u0161ek", + "K. Paul", + "L. Mattera", + "D. Van De Ville", + "M.M. Lagan\u00e0", + "A. Smith", + "N.D. Kurniawan", + "M.J. Ruitenberg", + "M. Barth", + "N. Atcheson", + "P.-G. Henry", + "J. Joers", + "R. Labounek", + "C. Lenglet", + "I. Nestrasil", + "T. Parrish", + "Z. Smith\u00a0", + "A. Foias", + "R.L. Barry", + "G. Savini", + "J. Xu", + "A. Seifert", + "J-W. Kim", + "D. Pareto", + "\u00c0. Rovira", + "V. Callot", + "P. De Sousa", + "A.J.E. Combes", + "C. Law", + "C.Gandini Wheeler-Kingshott", + "H. Benali", + "K.A. Weber II", + "K.P. O'Grady", + "M. Descoteaux", + "M. Dost\u00e1l", + "M. Fratini", + "M. Ke\u0159kovsk\u00fd", + "P. Wyss", + "S.A. Smith", + "F. Grussu", + "M. Battiston", + "M. C. Yiannakas", + "R. S. Samson" + ], + "Acknowledgements": "We thank Gerald Moran and Bart Schraa (Siemens Healthcare), Suchandrima Banerjee and Naoyuki Takei (GE Healthcare), Carollyn Hurst, Andr\u00e9 Cyr, Arnaud Bor\u00e9 and Pierre Bellec (Functional Neuroimaging Unit), Charles Tremblay (Polytechnique Montreal), Antonys Melek and Habib Benali (PERFORM center, Concordia University), Ives Levesque (McGill University) and all the volunteers who participated in the Spinal Cord MRI Public Database.", + "Funding": [ + "Funded by the Canada Research Chair in Quantitative Magnetic Resonance Imaging [950-230815]", + "the Canadian Institute of Health Research [CIHR FDN-143263]", + "the Canada Foundation for Innovation [32454, 34824]", + "the Fonds de Recherche du Qu\u00e9bec - Sant\u00e9 [28826]", + "the Fonds de Recherche du Qu\u00e9bec - Nature et Technologies [2015-PR-182754]", + "the Natural Sciences and Engineering Research Council of Canada [435897-2013]", + "the Canada First Research Excellence Fund (IVADO and TransMedTech)", + "the Quebec BioImaging Network [5886]", + "Spinal Research and Wings for Life (INSPIRED project)", + "the National Institutes of Health (NIH) through grant R00EB016689 (R.L.B.)", + "the Instituto Investigaci\u00f3n Carlos III (Spain, PI18/00823). The content is solely the responsibility of the authors and does not necessarily represent the official views of the NIH." + ], + "DatasetDOI": "10.18112/openneuro.ds002902.v1.0.0" +} diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..8d6d51d453 --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,72 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Verio", + "InstitutionName": "CEMEREM", + "InstitutionalDepartmentName": "CEMEREM", + "InstitutionAddress": "RUE_ST_PIERRE_264_MARSEILLE...92C536..._District_FR_13006", + "DeviceSerialNumber": "40146", + "StationName": "MRC40146", + "PatientPosition": "HFS", + "ProcedureStepDescription": "TEST_VC_SPINE", + "SoftwareVersions": "syngo_MR_B17", + "MRAcquisitionType": "3D", + "SeriesDescription": "GRE-MT1", + "ProtocolName": "GRE-MT1", + "ScanningSequence": "GR", + "SequenceVariant": "MTC_SP", + "ScanOptions": "MT", + "SequenceName": "_fl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "DIS2D" + ], + "SeriesNumber": 13, + "AcquisitionTime": "12:09:20.497500", + "AcquisitionNumber": 1, + "SliceThickness": 5, + "SAR": 0.543298, + "EchoTime": 0.0035, + "RepetitionTime": 0.035, + "FlipAngle": 9, + "PartialFourier": 1, + "BaseResolution": 256, + "ShimSetting": [ + -5818, + 12738, + -11958, + -438, + -319, + 1383, + 480, + -194 + ], + "TxRefAmp": 351.351, + "PhaseResolution": 1, + "ReceiveCoilName": "NeckMatrix", + "PulseSequenceDetails": "%SiemensSeq%_gre", + "PercentPhaseFOV": 100, + "PhaseEncodingSteps": 255, + "AcquisitionMatrixPE": 256, + "ReconMatrixPE": 256, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 260, + "DwellTime": 7.5e-06, + "ImageOrientationPatientDICOM": [ + 1, + 0, + 0, + 0, + 0.99889, + -0.0471065 + ], + "InPlanePhaseEncodingDirectionDICOM": "COL", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20171215 (OpenJPEG build) Clang8.1.0", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.nii.gz new file mode 100644 index 0000000000..f211bab4c1 --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1174002--9aa6ec79a78cdfa40d54e8ff8ac2d55629d5c5023c0f918e3fb626ce74ea3c3d.nii.gz diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..9d79ab5f2d --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,71 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Verio", + "InstitutionName": "CEMEREM", + "InstitutionalDepartmentName": "CEMEREM", + "InstitutionAddress": "RUE_ST_PIERRE_264_MARSEILLE...92C536..._District_FR_13006", + "DeviceSerialNumber": "40146", + "StationName": "MRC40146", + "PatientPosition": "HFS", + "ProcedureStepDescription": "TEST_VC_SPINE", + "SoftwareVersions": "syngo_MR_B17", + "MRAcquisitionType": "3D", + "SeriesDescription": "GRE-T1w", + "ProtocolName": "GRE-T1w", + "ScanningSequence": "GR", + "SequenceVariant": "SP", + "SequenceName": "_fl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "DIS2D" + ], + "SeriesNumber": 15, + "AcquisitionTime": "12:13:48.242500", + "AcquisitionNumber": 1, + "SliceThickness": 5, + "SAR": 0.0352258, + "EchoTime": 0.0035, + "RepetitionTime": 0.015, + "FlipAngle": 15, + "PartialFourier": 1, + "BaseResolution": 256, + "ShimSetting": [ + -5818, + 12738, + -11958, + -438, + -319, + 1383, + 480, + -194 + ], + "TxRefAmp": 351.351, + "PhaseResolution": 1, + "ReceiveCoilName": "NeckMatrix", + "PulseSequenceDetails": "%SiemensSeq%_gre", + "PercentPhaseFOV": 100, + "PhaseEncodingSteps": 255, + "AcquisitionMatrixPE": 256, + "ReconMatrixPE": 256, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 260, + "DwellTime": 7.5e-06, + "ImageOrientationPatientDICOM": [ + 1, + 0, + 0, + 0, + 0.99889, + -0.0471065 + ], + "InPlanePhaseEncodingDirectionDICOM": "COL", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20171215 (OpenJPEG build) Clang8.1.0", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.nii.gz new file mode 100644 index 0000000000..c848347a0c --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1229554--48c6bd34de552527ad6bc57d911585113a995f1edb07d33d0d5ec0dd77736e5c.nii.gz diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.json b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.json new file mode 100644 index 0000000000..a8a77afda9 --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.json @@ -0,0 +1,75 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Verio", + "InstitutionName": "CEMEREM", + "InstitutionalDepartmentName": "CEMEREM", + "InstitutionAddress": "RUE_ST_PIERRE_264_MARSEILLE...92C536..._District_FR_13006", + "DeviceSerialNumber": "40146", + "StationName": "MRC40146", + "PatientPosition": "HFS", + "ProcedureStepDescription": "TEST_VC_SPINE", + "SoftwareVersions": "syngo_MR_B17", + "MRAcquisitionType": "3D", + "SeriesDescription": "T1w", + "ProtocolName": "T1w", + "ScanningSequence": "GR_IR", + "SequenceVariant": "SP_MP", + "ScanOptions": "IR", + "SequenceName": "_tfl3d1", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS2D" + ], + "SeriesNumber": 3, + "AcquisitionTime": "11:50:7.980000", + "AcquisitionNumber": 1, + "SliceThickness": 1, + "SAR": 0.0592781, + "EchoTime": 0.00321, + "RepetitionTime": 2, + "InversionTime": 1, + "FlipAngle": 9, + "PartialFourier": 1, + "BaseResolution": 320, + "ShimSetting": [ + -5787, + 12766, + -11935, + 18, + -112, + 27, + 622, + 117 + ], + "TxRefAmp": 420.82, + "PhaseResolution": 1, + "ReceiveCoilName": "NeckMatrix", + "PulseSequenceDetails": "%SiemensSeq%_tfl", + "PercentPhaseFOV": 81.25, + "PhaseEncodingSteps": 259, + "AcquisitionMatrixPE": 260, + "ReconMatrixPE": 320, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 150, + "DwellTime": 1.04e-05, + "ImageOrientationPatientDICOM": [ + 0, + 1, + -0.000349045, + 0, + -0.000349045, + -1 + ], + "InPlanePhaseEncodingDirectionDICOM": "ROW", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20171215 (OpenJPEG build) Clang8.1.0", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.nii.gz b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.nii.gz new file mode 100644 index 0000000000..49591f106c --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23710700--66c80142b561cbc866085afe62d39f37e1af8496fc2afba105e686d7083da4f4.nii.gz diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.json b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.json new file mode 100644 index 0000000000..667eb85ced --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.json @@ -0,0 +1,75 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Verio", + "InstitutionName": "CEMEREM", + "InstitutionalDepartmentName": "CEMEREM", + "InstitutionAddress": "RUE_ST_PIERRE_264_MARSEILLE...92C536..._District_FR_13006", + "DeviceSerialNumber": "40146", + "StationName": "MRC40146", + "PatientPosition": "HFS", + "ProcedureStepDescription": "TEST_VC_SPINE", + "SoftwareVersions": "syngo_MR_B17", + "MRAcquisitionType": "2D", + "SeriesDescription": "GRE-ME", + "ProtocolName": "GRE-ME", + "ScanningSequence": "GR", + "SequenceVariant": "SP", + "SequenceName": "_me2d1r3", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "DIS2D" + ], + "SeriesNumber": 16, + "AcquisitionTime": "12:14:54.757500", + "AcquisitionNumber": 1, + "SliceThickness": 5, + "SpacingBetweenSlices": 5, + "SAR": 0.0119548, + "EchoTime": 0.014, + "RepetitionTime": 0.6, + "FlipAngle": 30, + "PartialFourier": 1, + "BaseResolution": 448, + "ShimSetting": [ + -5852, + 12634, + -12007, + -856, + -202, + 1372, + 414, + -285 + ], + "TxRefAmp": 351.351, + "PhaseResolution": 1, + "ReceiveCoilName": "NeckMatrix", + "PulseSequenceDetails": "%SiemensSeq%_medic", + "PercentPhaseFOV": 100, + "PhaseEncodingSteps": 447, + "AcquisitionMatrixPE": 448, + "ReconMatrixPE": 448, + "ParallelReductionFactorInPlane": 2, + "PixelBandwidth": 260, + "DwellTime": 4.3e-06, + "PhaseEncodingDirection": "j-", + "ImageOrientationPatientDICOM": [ + 1, + 0, + 0, + 0, + 0.99889, + -0.0471065 + ], + "InPlanePhaseEncodingDirectionDICOM": "COL", + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20171215 (OpenJPEG build) Clang8.1.0", + "AcquisitionDuration": 290.0, + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.nii.gz b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.nii.gz new file mode 100644 index 0000000000..3e03d658a1 --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2star.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s4960516--375a95497f05f233b094c89082aeb51086786aba690238e97d6f9fb00e7a9e8b.nii.gz diff --git a/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2w.json b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2w.json new file mode 100644 index 0000000000..ecc4ec3455 --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2w.json @@ -0,0 +1,75 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Verio", + "InstitutionName": "CEMEREM", + "InstitutionalDepartmentName": "CEMEREM", + "InstitutionAddress": "RUE_ST_PIERRE_264_MARSEILLE...92C536..._District_FR_13006", + "DeviceSerialNumber": "40146", + "StationName": "MRC40146", + "PatientPosition": "HFS", + "ProcedureStepDescription": "TEST_VC_SPINE", + "SoftwareVersions": "syngo_MR_B17", + "MRAcquisitionType": "3D", + "SeriesDescription": "T2w", + "ProtocolName": "T2w", + "ScanningSequence": "SE", + "SequenceVariant": "SK_SP", + "ScanOptions": "PFP", + "SequenceName": "_spcR3d1_87", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS2D" + ], + "SeriesNumber": 4, + "AcquisitionTime": "11:55:19.230000", + "AcquisitionNumber": 1, + "SliceThickness": 0.8, + "SAR": 0.693363, + "EchoTime": 0.12, + "RepetitionTime": 2, + "FlipAngle": 180, + "PartialFourier": 1, + "BaseResolution": 320, + "ShimSetting": [ + -5801, + 12836, + -12188, + -18, 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b/derivatives/data_preprocessed/sub-amu01/anat/sub-amu01_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8880618--c0789954a1212e7c58299356ec4f06bdf09188f44c7f9df4ce4c68f05b12b3f1.nii.gz diff --git a/derivatives/data_preprocessed/sub-amu01/dwi/sub-amu01_rec-average_dwi.json b/derivatives/data_preprocessed/sub-amu01/dwi/sub-amu01_rec-average_dwi.json new file mode 100644 index 0000000000..a218d9b38a --- /dev/null +++ b/derivatives/data_preprocessed/sub-amu01/dwi/sub-amu01_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-amu01/dwi/sub-amu01_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-amu01/dwi/sub-amu01_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..414d9d2e15 --- /dev/null +++ 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at end of file diff --git a/derivatives/data_preprocessed/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..547073afe2 --- /dev/null +++ b/derivatives/data_preprocessed/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s6950249--9def5bd5522c734a134d662b4126991e78e687d3c4b02d3c34a15eef7d7e8a5c.nii.gz diff --git a/derivatives/data_preprocessed/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w.json b/derivatives/data_preprocessed/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w.json new file mode 100644 index 0000000000..0c59823a8b --- /dev/null +++ b/derivatives/data_preprocessed/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w.json @@ -0,0 +1,54 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.768, + "Manufacturer": "GE", + "ManufacturersModelName": 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--git a/derivatives/data_preprocessed/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..bca230d3c3 --- /dev/null +++ b/derivatives/data_preprocessed/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7424293--5819217ee0b8e6f16cdf51882bf1101d7f9a19b9ab66a03a52bae19ccfa7aaf9.nii.gz diff --git a/derivatives/data_preprocessed/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..d229bfef4d --- /dev/null +++ b/derivatives/data_preprocessed/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,49 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "GE", + "ManufacturersModelName": "SIGNA_PET_MR", + "InstitutionName": "FN_Brno", 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--git a/derivatives/data_preprocessed/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..1e974e3b8a --- /dev/null +++ b/derivatives/data_preprocessed/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7427303--5bfb23a84e25fae7063502c2c76511f0a0837cf95db5c28038a1139e7bb4160e.nii.gz diff --git a/derivatives/data_preprocessed/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..24702f3933 --- /dev/null +++ b/derivatives/data_preprocessed/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,49 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "GE", + "ManufacturersModelName": "SIGNA_PET_MR", + "InstitutionName": "FN_Brno", 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a/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS.nii.gz new file mode 100644 index 0000000000..3037ff268e --- /dev/null +++ b/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1826828--76e71a6db1c60b269d7a0cbb3300670cc2dd8b22abbebb22640744951bd4f879.nii.gz diff --git a/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..68ddb79873 --- /dev/null +++ b/derivatives/data_preprocessed/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,76 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.253, + "Manufacturer": "Siemens", 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b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS.nii.gz new file mode 100644 index 0000000000..4960eebe61 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2539229--7b9d1bf83109ae311c687c1dff7bcf8be31bbbe621c16a46cceac5b7c51458e9.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w.json b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w.json new file mode 100644 index 0000000000..4766ba44e8 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w.json @@ -0,0 +1,67 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.754, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + 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b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w.json new file mode 100644 index 0000000000..cd5aaac4fb --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w.json @@ -0,0 +1,67 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.754, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + "InstitutionalDepartmentName": "Diagnostica_per_Immagine", + "DeviceSerialNumber": "34249", + "StationName": "PHILIPS-29CDACE", + "BodyPartExamined": "SPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "FRATINI", + "SoftwareVersions": "5.4.1_5.4.1.1", + "MRAcquisitionType": "3D", + "SeriesDescription": "T2w", + "ProtocolName": "T2w", + "ScanningSequence": "SE", + "SequenceVariant": "SK", + "ScanOptions": "PFP", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "SE", + "M", + "SE" + ], + "SeriesNumber": 301, + 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diff --git a/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w.nii.gz new file mode 100644 index 0000000000..a0009659fb --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15167995--74b3fe79cf6d4bdc13e003d9fedb7de85fdfc59268fc5a55d0ece23cb9077f61.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.json b/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.json new file mode 100644 index 0000000000..a218d9b38a --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..afff2f0be1 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s471138--5b32e9b55413db86b7da8b810a52cf0f0195506bcb3a9eea24568d7218012fa9.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..e75236ed9f --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,65 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + 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b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2114287--09d4eb46d8f905ac0d5c9a1bb277c566500bc9f2489dfb6ee10539a47a50a77b.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..6da985a004 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,65 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + "InstitutionalDepartmentName": "Diagnostica_per_Immagine", + "DeviceSerialNumber": "34249", + "StationName": "PHILIPS-29CDACE", + "BodyPartExamined": "SPINE", + 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b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w.json new file mode 100644 index 0000000000..36f9f4aaff --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w.json @@ -0,0 +1,67 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + "InstitutionalDepartmentName": "Diagnostica_per_Immagine", + "DeviceSerialNumber": "34249", + "StationName": "PHILIPS-29CDACE", + "BodyPartExamined": "SPINE", + "PatientPosition": "HFS", + "ProcedureStepDescription": "FRATINI", + "SoftwareVersions": "5.4.1_5.4.1.1", + "MRAcquisitionType": "3D", + "SeriesDescription": "T1w", + "ProtocolName": "T1w", + "ScanningSequence": "GR", + "SequenceVariant": "MP", + "ScanOptions": "OTHER", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "FFE", + "M", + "FFE" + ], + "SeriesNumber": 601, 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file diff --git a/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w.nii.gz new file mode 100644 index 0000000000..9bc43cd4a9 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38346201--9921e62778a0fe0ac55f0c2f01bc0f30b33203c39b9877dbd1e4bb280a4333bb.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star.json b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star.json new file mode 100644 index 0000000000..2e76617ef0 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star.json @@ -0,0 +1,70 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + 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--git a/derivatives/data_preprocessed/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w.nii.gz new file mode 100644 index 0000000000..48ee168aa5 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s17316233--f00833560c6c300fa2cb6d05aee8c4fe1dfc312e8a0448a3c94aa691b8fb8561.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.json b/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.json new file mode 100644 index 0000000000..a218d9b38a --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..4375c4ed6e --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s470973--99d42c7ff4bedcce9e83e8250c6c3b2e12260cd901afb9295425749d12968569.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..76c8cae426 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,65 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 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b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2205635--3fd33722c1990911cbfe2023076f7190c09ebd1edeac2fceb2cca1c541af6c35.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..ef605ddfef --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,65 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + "InstitutionalDepartmentName": "Diagnostica_per_Immagine", + "DeviceSerialNumber": "34249", + "StationName": "PHILIPS-29CDACE", + "BodyPartExamined": "SPINE", + 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file diff --git a/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w.nii.gz new file mode 100644 index 0000000000..e6ae507187 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s16449075--4e618c373678a6ed45f20af2a6f543b46fbf7491c5a755488cbdfa5dc0c66036.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star.json b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star.json new file mode 100644 index 0000000000..1fc8b61ab2 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star.json @@ -0,0 +1,70 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + 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index 0000000000..18325eb7eb --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2300646--36481262f420451b11ca77f4c8a13a6da3e46015aaeea07d9c26912ca0cf709a.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w.json b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w.json new file mode 100644 index 0000000000..a63c6d0c35 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w.json @@ -0,0 +1,67 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 127.753, + "Manufacturer": "Philips", + "ManufacturersModelName": "Achieva", + "InstitutionName": "Fondazione_S.Lucia", + "InstitutionalDepartmentName": "Diagnostica_per_Immagine", + "DeviceSerialNumber": "34249", + "StationName": "PHILIPS-29CDACE", + "BodyPartExamined": "SPINE", + 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Clang8.1.0", + "Dcm2bidsVersion": "2.1.4", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS.nii.gz new file mode 100644 index 0000000000..681b66bb83 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2161406--06803aa2180c33b726364ae613f5ffdf601954b840963c52f7f6dc0f2e15acf2.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..3717a97a0d --- /dev/null +++ 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+} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w.nii.gz new file mode 100644 index 0000000000..c6944c4fa0 --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15969925--8db40ddbb6c5fecaad04467289a89b4589a388f5b53e4b55477a4e2f87ad5a58.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.json b/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.json new file mode 100644 index 0000000000..a218d9b38a --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..8213a4008f --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s470586--3228a96261e70642ba886b074b8b071fca8517b778673af6b0f1ca806ce97249.nii.gz diff --git a/derivatives/data_preprocessed/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..253d0f610f --- /dev/null +++ b/derivatives/data_preprocessed/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS.json @@ -0,0 +1,65 @@ +{ + "Modality": "MR", + 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b/derivatives/data_preprocessed/sub-geneva01/dwi/sub-geneva01_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-geneva01/dwi/sub-geneva01_rec-average_dwi.nii.gz b/derivatives/data_preprocessed/sub-geneva01/dwi/sub-geneva01_rec-average_dwi.nii.gz new file mode 100644 index 0000000000..5394314931 --- /dev/null +++ b/derivatives/data_preprocessed/sub-geneva01/dwi/sub-geneva01_rec-average_dwi.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s387439--8907886d0b3d1515aad3c06be168688b0ab16ba1a856bfb5b52c085e2af24733.nii.gz diff --git a/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS.json b/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS.json new file mode 100644 index 0000000000..cfc8b719c7 --- 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\ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS.nii.gz new file mode 100644 index 0000000000..121bad84c3 --- /dev/null +++ b/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1853020--36a112af30dd3de0c7b6aa7889b6b0188acb02627b2cc9513ac91dfa0cc6b514.nii.gz diff --git a/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..75f6e683f5 --- /dev/null +++ b/derivatives/data_preprocessed/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,75 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.257, + 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at end of file diff --git a/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2star.nii.gz b/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2star.nii.gz new file mode 100644 index 0000000000..ec4486c1aa --- /dev/null +++ b/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2star.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s4351349--b13974a806754936388ac5f6fe353d932d1bc4060e5e3952e22e89a72ab3e22f.nii.gz diff --git a/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2w.json b/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2w.json new file mode 100644 index 0000000000..904d8c75cb --- /dev/null +++ b/derivatives/data_preprocessed/sub-geneva06/anat/sub-geneva06_space-other_T2w.json @@ -0,0 +1,81 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.257, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma", + "InstitutionName": 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diff --git a/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2star.nii.gz b/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2star.nii.gz new file mode 100644 index 0000000000..e9a3605241 --- /dev/null +++ b/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2star.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s3707521--d36684f130dc9d33491b76dd5f5035e1de49a4ee571f048bc33093f10d32dd63.nii.gz diff --git a/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2w.json b/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2w.json new file mode 100644 index 0000000000..ae7df0a580 --- /dev/null +++ b/derivatives/data_preprocessed/sub-mgh01/anat/sub-mgh01_space-other_T2w.json @@ -0,0 +1,81 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.254, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Skyra", + "InstitutionName": "Martinos_Center_Bay_1", + 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b/derivatives/data_preprocessed/sub-mgh02/anat/sub-mgh02_space-other_T1w.json @@ -0,0 +1,80 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.254, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Skyra", + "InstitutionName": "Martinos_Center_Bay_1", + "InstitutionalDepartmentName": "Department", + "InstitutionAddress": "13th_149_Charlestown_MA_US_02129", + "DeviceSerialNumber": "45407", + "StationName": "BAY1OC", + "BodyPartExamined": "BRAIN", + "PatientPosition": "HFS", + "ProcedureStepDescription": "INVESTIGATORS_Barry", + "SoftwareVersions": "syngo_MR_E11", + "MRAcquisitionType": "3D", + "SeriesDescription": "T1w", + "ProtocolName": "T1w", + "ScanningSequence": "GR_IR", + "SequenceVariant": "SK_SP_MP", + "ScanOptions": "IR", + "SequenceName": "_tfl3d1_16", + "ImageType": [ + "ORIGINAL", + "PRIMARY", + "M", + "NORM", + "DIS3D", + "DIS2D" + ], + "SeriesNumber": 2, + "AcquisitionTime": "15:34:22.110000", + "AcquisitionNumber": 1, + 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b/derivatives/data_preprocessed/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1877649--f045eb56783481182e339300f9ac59fec80880e951726130122dc059dbb639f0.nii.gz diff --git a/derivatives/data_preprocessed/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..48444c783f --- /dev/null +++ b/derivatives/data_preprocessed/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,75 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "InstitutionName": "Mc_Connell_Brain_Imaging_Centre", + "InstitutionalDepartmentName": "Department", + "InstitutionAddress": "University_Street_3801_Montreal_District_CA_H3A_2B4", + "DeviceSerialNumber": "167017", + "StationName": "MRC35056", + "BodyPartExamined": "BRAIN", + 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a/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS.nii.gz b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS.nii.gz new file mode 100644 index 0000000000..f4b8c812b6 --- /dev/null +++ b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1647030--b3666cd97d81aea00c2e802f4b3eea5f028f8d9e34f91803662084ddacf4c94f.nii.gz diff --git a/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T1w.json b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T1w.json new file mode 100644 index 0000000000..d5a762beca --- /dev/null +++ b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T1w.json @@ -0,0 +1,79 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "InstitutionName": "Mc_Connell_Brain_Imaging_Centre", + 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b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s22766943--66b61ac2512bcfbf4046a759fa2c6ccfdd17471381325be3143a413e31c8d791.nii.gz diff --git a/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T2star.json b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T2star.json new file mode 100644 index 0000000000..45d2ef531e --- /dev/null +++ b/derivatives/data_preprocessed/sub-mniS08/anat/sub-mniS08_space-other_T2star.json @@ -0,0 +1,81 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "InstitutionName": "Mc_Connell_Brain_Imaging_Centre", + "InstitutionalDepartmentName": "Department", + "InstitutionAddress": "University_Street_3801_Montreal_District_CA_H3A_2B4", + "DeviceSerialNumber": "167017", + "StationName": "MRC35056", + "BodyPartExamined": "BRAIN", + "PatientPosition": "HFS", + 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--- /dev/null +++ b/derivatives/data_preprocessed/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23455965--373cdb9835edcdbfed081e787b033b68762c3e5066ba83f75b56572d3eb46c09.nii.gz diff --git a/derivatives/data_preprocessed/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star.json b/derivatives/data_preprocessed/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star.json new file mode 100644 index 0000000000..2ded352798 --- /dev/null +++ b/derivatives/data_preprocessed/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star.json @@ -0,0 +1,83 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "ImagingFrequency": 123.258, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Skyra", + "InstitutionName": "MT_SINAI_MED_CTR_3T_SKYRA_RE_MR12", + "InstitutionalDepartmentName": "Department", + "InstitutionAddress": "Madison_Avenue_1470_New_York_NYC_US_10029", + "DeviceSerialNumber": "45435", + "StationName": "AWP45435", 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b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2141317--4fa4aa436ddc20c290b1db21cc6ddccdfdc237ef99c3089398060333bcf5a531.nii.gz diff --git a/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..82548ddfd6 --- /dev/null +++ b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,10 @@ +{ + "EchoTime": 0.002001, + "RepetitionTime": 0.015, + "FlipAngle": 15, + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20181125 GCC4.9.2", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS.nii.gz 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b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_space-other_T2w.json @@ -0,0 +1,11 @@ +{ + "EchoTime": 0.12, + "RepetitionTime": 3.5, + "FlipAngle": 90, + "ConversionSoftware": "dcm2niix", + "ConversionSoftwareVersion": "v1.0.20181125 GCC4.9.2", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_space-other_T2w.nii.gz b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_space-other_T2w.nii.gz new file mode 100644 index 0000000000..c52a55c361 --- /dev/null +++ b/derivatives/data_preprocessed/sub-nottwil02/anat/sub-nottwil02_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11936942--12e5e958a5bb72ca2f1560b269d010d4583b456a057280cc111cf4d2734b5385.nii.gz diff --git a/derivatives/data_preprocessed/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi.json 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b/derivatives/data_preprocessed/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1788920--7855adc629cd13d7812ac223f6fceb50a9a6bfa3f23696171e17fbcba5a1833c.nii.gz diff --git a/derivatives/data_preprocessed/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS.json b/derivatives/data_preprocessed/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS.json new file mode 100644 index 0000000000..dc27622f6d --- /dev/null +++ b/derivatives/data_preprocessed/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS.json @@ -0,0 +1,74 @@ +{ + "Modality": "MR", + "MagneticFieldStrength": 3, + "Manufacturer": "Siemens", + "ManufacturersModelName": "Prisma_fit", + "InstitutionName": "IUGM", + "InstitutionalDepartmentName": "Department", + "InstitutionAddress": "Chemin_Queen-Mary_4565_Montreal_District_CA_H3W_1W5", + "DeviceSerialNumber": "167006", + "StationName": "MRC35049", + "BodyPartExamined": "SPINE", + "PatientPosition": "HFS", + 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+} \ No newline at end of file diff --git a/derivatives/data_preprocessed/sub-unf06/anat/sub-unf06_space-other_T2w.nii.gz b/derivatives/data_preprocessed/sub-unf06/anat/sub-unf06_space-other_T2w.nii.gz new file mode 100644 index 0000000000..c6004664f4 --- /dev/null +++ b/derivatives/data_preprocessed/sub-unf06/anat/sub-unf06_space-other_T2w.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10931832--6890d8d129497dcbf34ea41ef77aa3efe6442cb16f093db07a736d4cfcb61f16.nii.gz diff --git a/derivatives/data_preprocessed/sub-unf06/dwi/sub-unf06_rec-average_dwi.json b/derivatives/data_preprocessed/sub-unf06/dwi/sub-unf06_rec-average_dwi.json new file mode 100644 index 0000000000..a218d9b38a --- /dev/null +++ b/derivatives/data_preprocessed/sub-unf06/dwi/sub-unf06_rec-average_dwi.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_dmri_moco", + "Version": "SCT v6.1", + "Description": "Mean image across directions after motion correction" + } + ] +} \ No newline at end of file diff --git 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b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50574--daf6d876328b4bbb6507d7e59951cd7a3e9e80eec31ee1f94e0f00358cbb9acd.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 30baa49a10..0000000000 --- a/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7219--fbf00861ceb22756f7d9891a63496c1583e736df39f7b2b23ea9e3d145daa4bd.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..75a35be41c --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7235--76473afc85950903dae683828dd57e7f7f1fc57e01da6a98aa443b7c6cf46cd9.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5b37803074 --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:39:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu01/anat/sub-amu01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fa8d51c30 --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..322f623a92 --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15043--a1de7e3b8d4534261efd9d819f57d40108a0095c721af4ba73642f497d56fbe1.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3f3b0727ca --- /dev/null +++ b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu01/anat/sub-amu01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2star_seg-manual.json b/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-amu01/anat/sub-amu01_T2star_seg-manual.json rename to derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz 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rename to derivatives/labels/sub-amu02/anat/sub-amu02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T1w_seg-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T1w_seg-manual.json deleted file mode 100644 index aa2a8a252a..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:37:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4508ab4241 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--66a8aad7c3815dcd89c73aa83345c0a920a0f9e6204f0b61f99fb041cbeb6011.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.nii.gz deleted file mode 100644 index e5eb187c32..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14940--e35f96ff4d53a47367500d65f52e21de520aba63e4ec98321e6228b3b9a4c6c8.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_labels-disc-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu02/anat/sub-amu02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu02/anat/sub-amu02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu02/anat/sub-amu02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_seg-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_seg-manual.json deleted file mode 100644 index 5709188f6c..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:41:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06a01930ec --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--469d03a24446983efa2b12c41252679393f267bcc58da0a14c6f80e8bf1bf163.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f871471168..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7360--63ecfd471ea21bbfb6f1e92f3e8e220d7d3808f14214d048c74d58c68b51af79.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6dca584ee3 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7382--2bcd7cb68ac1a0bc5a53b477c3df36a0232b77f318ab64575b2b5f9f8432238d.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e1ed54fdda --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--765532e7286d3d5bee0fdec181507fc5f25df516909133df02ffdcfb8b97f72f.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f2eef9f80f..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:43:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 50d8ee2525..0000000000 --- a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3350--d444c37b6b9b74d8bd6b87e97169f864f91cb712db48855a91820dcf3aaad530.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a6733337a5 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:43:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1ed47f6ba9 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13599--3bae9acb4d88d4b66c7d24e789989b6515365b22f5847c6723f449188e1fb147.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2febc579dc --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:37:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu02/anat/sub-amu02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu02/anat/sub-amu02_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fa8d51c30 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..547d259425 --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14960--896f6311648cff45d847a4aae81079ae5a62f3afe01aa49215d73f1118fa83d0.nii.gz diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4c95246c3f --- /dev/null +++ b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:41:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/anat/sub-amu02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu02/anat/sub-amu02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_T2w_seg-manual.json b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-amu01/anat/sub-amu01_T2w_seg-manual.json rename to derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..179b4ebabc --- /dev/null +++ b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5096--272ab7ab42f2d1dd15a951b3be217302889c1e41f212c219e09001603fc3940b.nii.gz diff --git a/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu02/dwi/sub-amu02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_labels-disc-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu03/anat/sub-amu03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_seg-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_seg-manual.json deleted file mode 100644 index 558001f7e7..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:40:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ae59494022 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105351--5d02f8f43a49290f4fc721dac66fd560f6d4926d6196beac47fb330b25ae46e8.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.json deleted file mode 100644 index 2bce3c7fb5..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:52:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.nii.gz deleted file mode 100644 index 0b7523f152..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6837--1858676a4885165e13f80fa0c357ffaaff9aab4507036e6043d58f0a370834f9.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_labels-disc-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu03/anat/sub-amu03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_seg-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_seg-manual.json deleted file mode 100644 index e2cf72810b..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:44:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0d5335eccf --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50602--fadd376fef8853c3fc67e87829c548f4dabce61d8fa9dbdf6096cf0d9c973e5f.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index aacf95d8a6..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7332--216bb8529b36e967c1b871935f19276b0303f46f29d8186ed2283849fbe64198.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7fd784dce3 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7327--614ee02a8114197abb3fd26b47fc6883d4cf6c5b235a2c40c90b43a2f41c82cd.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..17e1c0564d --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--0d505b75f4fe35b7a5d13f023d8a8d0fdfb2cd30f4af06cd435f649153674849.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d9f41d72b8..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 13:51:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0733a74ce2..0000000000 --- a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3375--c5900d9099b5c58433350c76d01ba1acd77e42dcd408a39a32666006acd8edc9.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8f3cd2c366 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:51:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b38b98f997 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13753--a226ea9e966520a2e956144a60e933a7319303deb0fe1c8b00d82af66602dec1.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5aa1578d89 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:40:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c9b719e14b --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:52:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2cf220cf2f --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28285--674ecabde3a7fbe0d7e8701a27756ff1481153464936f6373bc9bd7aee602ad1.nii.gz diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0d5299f1b5 --- /dev/null +++ b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 13:44:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/anat/sub-amu03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu03/anat/sub-amu03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7cd639173d --- /dev/null +++ b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5095--b6276b87a3d74a41d0627f9c9aff95c5fd9357eab4d9154c96631e62f91772ac.nii.gz diff --git a/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu03/dwi/sub-amu03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_labels-disc-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu04/anat/sub-amu04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_seg-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_seg-manual.json deleted file mode 100644 index 899a82a6ca..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:24:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b077bc6b7 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105312--a67d656645266bfad37a00d503fe28f298662802c4f52b453f60cdeaafe81526.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.nii.gz deleted file mode 100644 index 5d4cb97a63..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14734--8fca5f16738cfe34cdad49b91922d81d3aa40ad474c21bebf0fe6fbac3c444c1.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_labels-disc-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu04/anat/sub-amu04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_seg-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_seg-manual.json deleted file mode 100644 index 6833c847af..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:59:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9460d0e527 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50565--883a1f4034778a2d45f2b10d900204dbf909b1fa3d0ee45e2848274a26d16034.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9d16bcf2fb..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7284--c800a4068870af489e2562266b96bb0e6d77cbcf03ade74d21dee5cb62f5f102.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3aca90fe6f --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7226--3a468d2d92dca8935ceedb15700a4dbfea666c78456d2ddf8ebc0a4f39500cfa.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d507d67fe8 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50566--161fb3ab5da08207a83336fbc369fb80f9d626ac78ff41b0496bad60bd303922.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f3c5893d90..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:59:46" -} diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 5273176e5e..0000000000 --- a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3284--c5280505900304c86602a4dd07f7446e9ee541a41e79e55d02ca04bb7989fc50.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..954ecbe81d --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:59:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f5512e6ff --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13604--ffddcd1ad95bf2ca279734e9066f526f41c671d78d51c1013f8d03d25faed2e2.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..33cfc7b8c9 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:24:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fa8d51c30 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b66f9f69c2 --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14755--de97e3a830c2e9c1a24ccbd87c2c424a5c174e8367b10508e290aa72ef4c14fa.nii.gz diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..5fe0f2e5ae --- /dev/null +++ b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:59:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/anat/sub-amu04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/anat/sub-amu04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-amu01/dwi/sub-amu01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aaab6e2b1b --- /dev/null +++ b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5060--27d9701a5d5c447cdf0905f404a52ec628f2cc1d50baf9b37777536eca65f7b0.nii.gz diff --git a/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu04/dwi/sub-amu04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_labels-disc-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-amu05/anat/sub-amu05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu05/anat/sub-amu05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_seg-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_seg-manual.json deleted file mode 100644 index 8f8981c071..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:31:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..99d160a704 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--15fefe9d0460ba0fee75616918ff794e70127fffb8d2418d71882c75f556512a.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.nii.gz deleted file mode 100644 index 24e3095bb4..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14938--b2c3f7ebd1a0707796f8d8b7b0939a17d23c9b3638927bd8af5662cc2b94f388.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_labels-disc-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-amu05/anat/sub-amu05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_seg-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..88995de3c3 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50607--dc4c39a8247d4cfd3f9c2d2c12699dd80404abb93b3b71ce8a816be161b6eb04.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b1dd435334..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7313--dfa2d3df54f052d5489453ab216939a7746d90263329c09c4e1b7c7ed52fe47f.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25e4f0c77f --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7337--65b48c80d7f9ccadf03cda094d104ab05b218773150b8194a04476376781a859.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..64e60cc0ad --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--c39b09da06fe9837f16c042d67063464c4a70c74851995ff801a8c361f7c5905.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index eb54ce470d..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 577ab8b892..0000000000 --- a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7211--3627a8e7eb9231011fb37e664597973b9a7dcef2f292d247840629f3de458f45.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b35955c2ce --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f083f62c1a --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7180--09509579a4e238b2400e4d15956b235098b9013faa8d512dbfb78259addf49ba.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f01b2c1bcc --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:31:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fa8d51c30 --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b171c4b95a --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14959--6dfc9a8e300c9274ec51c645c69e3eb3799b0746fa7ddf7962099790d6e522d4.nii.gz diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3f3b0727ca --- /dev/null +++ b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/anat/sub-amu05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/anat/sub-amu05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ac75c8f9f8 --- /dev/null +++ b/derivatives/labels/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5103--5ea0a3b71ee427c47071ba9330ac16a3791bacdaae486443ef134963dd7ea350.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_seg-manual.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_seg-manual.json deleted file mode 100644 index 9d7584f2d8..0000000000 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:23:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fac154e00d --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--255aae9dbd19215eb9b3e000ad89b3fe7812c0a52ec5cd996b8d8ae495cf9cac.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_seg-manual.nii.gz deleted file mode 100644 index f5a0bd1a36..0000000000 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14860--a4da02a58b596a3eb46e6de23243694d2694b01ba1c368c73ccf4941ff24caae.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1c038440d0 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--4b44b9e242d3f1b3a9bc4c801fe537114c710786a4f0923c9cb45fb1229afe13.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 76c1ebd6d8..0000000000 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7275--deece596cc7f5deab8939dc8548217b4c7fcbc8af08d58f9b1628d27f5f44db3.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..44fcb0b80f --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7238--81a03a16016181d442fcc18903385eb2571f02db460cb330428add87cc118c06.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b906cdc1d5 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--17cd7d3f9d44dacc03fefe5bf8d7c6552b96653a5205adabc15ae0012a1e6e51.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2c25be8b0b..0000000000 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 968492b443..0000000000 --- a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51782--fc6795279a6d0c4f4f88718568aaa9dc81e7ef0b8e2521ed9230e78fc99d0b13.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7994a08f5f --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b84b25347 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51776--9e68bd4f481e00ebbe5d6076b8b0fdec4b087a28c2a65013bcde9930c3762c05.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1c872a4f6d --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:23:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba60a5f7bf --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..999373a68a --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14881--f349ecd00adc0965216e3a7d39fc0fa6fb0228a75cbc79d4efc3dfebea0d71ab.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..72d5efc799 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_seg-manual.json b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2star_seg-manual.json rename to derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bdcc11e1be --- /dev/null +++ b/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2101--3cf4606d1219b38befefaed5b3107299420d93d802cd7eb5ba42302ee97df308.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_seg-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_seg-manual.json deleted file mode 100644 index e4a661941c..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 16:12:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4242f8b122 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105353--7477246672b7bb419dcebb18a0b466cce65c0f7e11b3df24457bece3adc2981f.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_seg-manual.nii.gz deleted file mode 100644 index e42201703d..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14889--61e36fc3b47da9627455948bfacc044382e45bea1d7aa4ee4540c40a38cce8f1.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_seg-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_seg-manual.json deleted file mode 100644 index 5d20588b80..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:27:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b0685a3229 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50586--34ec466c8a2d838f37c24c38bb55467a5abb422d01b303f3608df5a4035007ed.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b41052d77d..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:49:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 68b5e0cd64..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3442--f85a69ddb504af366192d9d41ba4f424dc5e46c12dcdbc10244a76e3125b8f90.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..65ea824dd1 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:49:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..66181f4af4 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14024--d5cb7a3a238cc15b3aa199a1b05d1fd8c07af114d24c334b83590c5adacc9274.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3cba2e2a0e --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50587--84b7b94d37eca186e48b64652f94e15a3a6327682fc5d7fe946639afc2445318.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 92b51b3d34..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:56:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a132489482..0000000000 --- a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3315--924745f2685a80e537d17f2f776024ba457c381144883647205fbee01eec61d5.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..58166b07e3 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:56:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0db16eeeaf --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13718--c30eedb97504d0d40b0fc348ed24c8fcd8e851a4c016ae3ca67064bb7793ba99.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..37ab9db4bd --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 16:12:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba60a5f7bf --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f8d83c8b41 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14911--b7064c9420b7ce52de03f1e7d8a91808c29750eb2ae02c026ef16f7c8f55bf11.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..7860145034 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:27:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_seg-manual.json b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_T2w_seg-manual.json rename to derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..00ad92ae9b --- /dev/null +++ b/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2074--e9c49a5b57830b19bc72df40c11ac142e10584bf2e82db88ce408434ec18878e.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_seg-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_seg-manual.json deleted file mode 100644 index 955926e76b..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:15:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ef179e2252 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--f5d756a2e00ec1e25dcd89c8f85fd8051c97726fca0f55336bfea3e93be68c93.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.json deleted file mode 100644 index 1cbd70d7af..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:09:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.nii.gz deleted file mode 100644 index 0d06f8c75e..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6727--31a168125639df23d5c9bd7bef9c32d9a1927c94d0d35a07b6c6bec060350f67.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_seg-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_seg-manual.json deleted file mode 100644 index 3ee80c33ee..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:09:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0b8dc1caf3 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50585--abed2a51c26d6e7c11430851e96f7a474a9a2fc3a73c30a1979e67ec20b7f18d.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f82cb7b13d..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 10:06:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 35c99e67a5..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3349--3115656297c174d02e0b7cc99ecf5c69e3a765304b3ec54c743f1d42a5593b6b.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..64bd4be15f --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50602--531afd82dd15aff4cdf0407ccf32948becc8ffd37d5d23364521d81f84cf1450.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9b086916f5..0000000000 --- a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7109--0ca4c8d2b5c45e501a97984066bdfa17b954aeede1603667cb5e4abb3297d610.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..65b1bd9e15 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7037--63a3d8494c318494ca6dc4e05d0f4fec42ba170add1913c5aa8d4c757938f886.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..672f0eb6bf --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:15:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..87ad301a06 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:09:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6a5664c367 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28209--3a78b63f1d4a4f5815a7d5d2e777a01b9f9fa86c27ae9abca2d6bd6f02c8054b.nii.gz diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0b14e39408 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:09:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist03/anat/sub-balgrist03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b743c756e --- /dev/null +++ b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--a9351b3af4f5e339a30ba7c74fc6ae743dd3781c317d6ae4e4382e0a10e81928.nii.gz diff --git a/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_seg-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_seg-manual.json deleted file mode 100644 index 3d7b20fedb..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-11 14:34:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6eab214594 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--3b1dacd9b1ed7591b1f572b8bca8a67b1de2400851c1fe2ed4c089ae478a805d.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.nii.gz deleted file mode 100644 index 50448e4fa2..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14840--8e52828f9c4477140e93e3c029a51d8f17c660cedd50ebca21965ae950ff41dc.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_seg-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_seg-manual.json deleted file mode 100644 index e3ee22a2fe..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:15:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..966d0fb316 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--31da03a493392eef3bf11d07be15dae858a3265cf280abbb54dd18d82a5a617d.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 940abdef41..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:53:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2a572374f3..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3416--de11064c621938a4cd421da487fa4ed9aa221e0db3012a185e66df95c7c0e2ae.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..869312af1a --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:53:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..84f6df5129 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14017--e56dd3820c8459f764322c070a57cb4a2ca0140e3bdfed133bed56097f994ff8.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dfb32b0d9d --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50582--bfe1b9ec8c36b89af996059157a4edeb1d1038c2b04f1f7eae075724be91515b.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e066fb1fe4..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:41:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 5622cfebe0..0000000000 --- a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3354--db206e85defff5f968ad521bf68b52e14cf9ad0ab83f2ba1e7903d694646d614.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f8bcf66681 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:41:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..830a202986 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13821--e6a433fc1cd6d96e1b6c8b2c7d14f5ae275a4a45283ecbc72c3cc7ad74e280fb.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b65df53cd3 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-11 14:34:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba60a5f7bf --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c313dbdf33 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14861--b6e1e0332c3478fc8d0dc26f6e4de2956cdb6d8b646b62873a853c3c0070ae70.nii.gz diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..42175592ea --- /dev/null +++ b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:15:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist04/anat/sub-balgrist04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7e1c08d2b9 --- /dev/null +++ b/derivatives/labels/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--e29c0dd5fe9425ab968e60a9874cb11321052085fd74180bb58e527488d136a7.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_seg-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_seg-manual.json deleted file mode 100644 index c4b784adf7..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:26:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b332c88ca --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--0c21ab13dd9897a633944557447a7e5bd2333da279e15106d7234ffed5b606ee.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.nii.gz deleted file mode 100644 index 9046af50a6..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14824--8fa18dc3998a38c968172fe6df586b8f1417d12dfc2b00b433c8a69f0a673851.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_seg-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_seg-manual.json deleted file mode 100644 index 16aa55b732..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:26:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..76b18c32f8 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--948185ee9c1051e3b52f5c13efc997cf03d0f1b0aee832577d43f8904ccbf3a4.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b7a19a596..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:53:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3fd58989a2..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3401--2d07580d29c55e83b497762110399d47430894d52fc5aebce8fc454a2c2f94c2.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bac12ccfce --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:53:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5129653546 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13889--3e033ff7c8e052982ae63801a1d718abda1a8444c4108698adeca477258018e2.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a483147da1 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--28a99cdd1be6215bd7caa42f6cd7213b3c539e5aa5bbdfdeaa171c45920a4611.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 01b03ffcfe..0000000000 --- a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7191--c12c7b6cdab9043d61e7ef0714e2e2db765d1fac6ef858d789515784d9270e22.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..18c3860017 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7217--bf8eba4964b9c69b6a8b667859ff0c536172a882c01e82612f1c7eb34f74b416.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..adc492a833 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:26:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba60a5f7bf --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e25e3c762 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14845--9a79858cb4e1d726795fcf1ab6948dfa9681487b861ca20fe0ef1ccd02c30ceb.nii.gz diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..cb67c83044 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:26:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist05/anat/sub-balgrist05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..352ccac6fd --- /dev/null +++ b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--3a71257e58ba08347ca7d6af12b110c2f72bc5b423fa4b03f8f8beb9cb2f4189.nii.gz diff --git a/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_labels-disc-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_seg-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_seg-manual.json deleted file mode 100644 index 6eb21f49a9..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-11 14:40:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b6e7fc193b --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105367--e536ccb8ed82b94472e35c50084774e4ed442811e3677c9655f153bfcf768e79.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.nii.gz deleted file mode 100644 index 3727c31c6f..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14900--4c7eacc9fdd47a9b65a33668ae91cf21289f098e2b8c55e1535138a7cc6470ec.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_labels-disc-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_seg-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..372e77f19b --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--0dd3125eb248a5de9a76ea58c817b39612f62f50cde489730116a51611d1bf32.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index daa3e5e968..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7319--e3e1acb0d46c975bbcad3bc2c3ae4098992af2c590e4ac8cd12a5d925c4ba020.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e23dcca6ef --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7294--7b3665876864d137185ca6e8a51bc158808b029205ba089234e036a500a41f40.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f0228b1496 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--dc9a26650aab7133700df7210bf07a7c0eaa9787191d56c2f9f7fa9ea7c3d294.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 315482c615..0000000000 --- a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7130--f9d26232ee4a495df202d768ea73d882e43b982323a1bdce39216212f5c3e51a.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e176ed1d38 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7115--0619f18cf7a88192367738cae485b093e31e59f29fe9aee194df2ce000785c65.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6686ef2538 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-11 14:40:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba60a5f7bf --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45338c25a1 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14921--fa1658eb53901cbd728e7cc3a6fb81d5803b89a957da63a46d1feef7f1769460.nii.gz diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..72d5efc799 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist06/anat/sub-balgrist06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_seg-manual.json b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist02/anat/sub-balgrist02_T2star_seg-manual.json rename to derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..52cd90b355 --- /dev/null +++ b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--ac6edb18bfd260d2c094e779e4ffd74661091556a0a02c2cf103b4e31dbc24e1.nii.gz diff --git a/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_labels-disc-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_seg-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_seg-manual.json deleted file mode 100644 index 8a270715ca..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-11 14:28:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..92d9ea3bbb --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105340--8aa48ce8e192a50e517359ff59be21a5f132af448f3d933d6ad417c1e4ee39ef.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.json deleted file mode 100644 index 749a7cb8dc..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 09:47:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.nii.gz deleted file mode 100644 index c340a9e6fa..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6840--dfa4243ecb0c93bb9ff4d7045064c659ec3b1f3e42827159044b813cae587d0e.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_labels-disc-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_seg-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..52a9169a1c --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50587--12974bd44af60fd598e9f809870b3c75bdc99bd3225d0c74edd1425f7c379156.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index edc17474ec..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:38:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 95471ef8f5..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3389--38a5f273a5f9122afe87a51f7fb7ed1a975c4372955205aae4d88fb63897b281.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d89387f710 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--a048b3a207922f02145e292879f03836fd5cb4ba13cfe44786c701ca7459a5e3.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3cef74cc33..0000000000 --- a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7135--e0d12c092caca06e8bff11df429d22e1993900e52b2265895acbdd39247e2cbe.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..123745e525 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5c65b0f59b --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7110--001cd7be5bcbbb6427691ed207bf987ca0fc5e53ca56de91ee63d82cdcac453d.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9d3279569a --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-11 14:28:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..1a3d0edc7a --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 09:47:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..225f32ed39 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28358--58fc063bb66d93d75f0695d644993d210da3bf85fdc1b57481024257a3c4846d.nii.gz diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..72d5efc799 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona01/anat/sub-barcelona01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..56bc05e532 --- /dev/null +++ b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2080--2e088c74f02bd4b8637ba9ab308dd81d944e89afcea85adb7d81aebe0226c34d.nii.gz diff --git a/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_seg-manual.json deleted file mode 100644 index d0a928c00e..0000000000 --- a/derivatives/labels/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_labels-disc-manual.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_seg-manual.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_seg-manual.json deleted file mode 100644 index 2d9200d723..0000000000 --- a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:13:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0b2438434d --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105337--2eb2fd7a04f08d66c4ce86d0149a3bb2532a59978986afe8b3150f466bd9ac79.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.json deleted file mode 100644 index 46bd6130a5..0000000000 --- a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 10:30:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.nii.gz deleted file mode 100644 index 0b450584ad..0000000000 --- a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6863--c1c2f6ad6a3c785b7436ab8d8107f4533c5c532aed9d1955047677c6021f0622.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_labels-disc-manual.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..544dd2c61a --- /dev/null +++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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+++ b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--320e405698bba2f19ac0587c01a22ee421fbdc70d80e415161f3eb5fa86b166b.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c23e2171e1..0000000000 --- a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:32:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a5092eab9a..0000000000 --- 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+} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_seg-manual.json b/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_T2w_seg-manual.json rename to derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git 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a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_seg-manual.json b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_seg-manual.json deleted file mode 100644 index f637acdaaa..0000000000 --- a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-11 14:16:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2star_label-discs_desc-warp_dlabel.json 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b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_seg-manual.json b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_seg-manual.json deleted file mode 100644 index 39e2c55aaf..0000000000 --- a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:50:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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+++ b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--ce6d5c804523e5da8278cdb3c8dd45e7ccffe51721957c40bf966211aec0f0b2.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e570c6466e..0000000000 --- a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7205--4930865613e824142ac59ffe84bfb0985cd49f898625d1845a7052d00d2317ec.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- 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a/derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-discs_desc-warp_dlabel.json 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--git a/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_labels-disc-manual.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_seg-manual.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_seg-manual.json deleted file mode 100644 index 2e15d18b3d..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-11 14:37:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- 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index d1d9a41264..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 10:05:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_seg-manual.nii.gz deleted file mode 100644 index 861065dc3d..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6915--96b5b9280059cd3a968f74ae9bf255aa88a361251e339b4b848906e0170b3cbc.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_labels-disc-manual.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_seg-manual.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c8fbce8218 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--b1dd9a211c65b9e789e85d36424af834d696240b0c57a7d1b8d90de6b769421a.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index cff17c2acf..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:47:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f6cc6a66d3..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14052--8adc62dfb452313188a574e555ce36a80e066c4a13e1ac57dcc8bfd9f09adb22.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2a80635850..0000000000 --- a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7181--d4a11bdd2320250093bb422623c6d0e15a3381ea665647450bd8877c55e83266.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8080b891c9 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7132--95431ea74e5a5f1dc5727790ddfcc2630c3cad01217df75c929b19b2cf5d6c91.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fb1c4ad48e --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-11 14:37:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e4722521d9 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 10:05:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94c93d304b --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28461--3a3830f126820f6b9d0de23381704dc4532058bc15344536f19cbd78328b39cf.nii.gz diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona04/anat/sub-barcelona04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5d08c8bcaf --- /dev/null +++ b/derivatives/labels/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--f0cdcc991837e65f79c5abdffda2b9a6d067de18ef56363e28b5b5792eabe851.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_labels-disc-manual.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_seg-manual.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_seg-manual.json deleted file mode 100644 index d4c51b404a..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 16:08:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2star_label-discs_desc-warp_dlabel.json 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derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_seg-manual.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_seg-manual.json deleted file mode 100644 index c26dc805a9..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:22:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..72d779310f --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50555--620b2b9cdb6efdc84965ddd5344dc60d024512f62099f31e5aaac24cb009ef60.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index eba8d413df..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7177--d77f2ecaa815e60f4273d6ed4eb40f219209d63297c2ca429c057574e058f28f.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..adf1a5a91b --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7143--1f1ea20b22f634e7f8dd599c068dc300303027564868e8dd5fb4ac0ba65539c8.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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+/annex/objects/SHA256E-s50569--4f33ce043ba29fd3cf323b2bc7583db0b872d57134eb7ffb1451383106bbbe3c.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 044f43fa6d..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:34:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b3ab0f37db..0000000000 --- a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13597--2281f6b0b14c563bb31646abcabfc0b7109a423198727d5c0bccfc128afcd129.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..78dde61d35 --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 16:08:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6450dc3f71 --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 10:15:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_seg.nii.gz new file mode 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rename from derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0ba576e0b9 --- /dev/null +++ b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:22:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from 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derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7a9738253d --- /dev/null +++ b/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2046--5d555b8cd811a5985a50d1bc3c0989bf01ed6ebc69298a778a9a496bd22b2591.nii.gz diff --git a/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T1w_labels-disc-manual.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T1w_labels-disc-manual.json rename to 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--git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_labels-disc-manual.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_seg-manual.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6d37d2ae07..0000000000 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7231--6a4325f391c5099923e0f605b842e65ada70103d86699f7834a3b35bbef49a7d.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a8992b9ee8 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7223--030771b8312443e2a2615bf74397e456cc6dd6019b4b0f851637cfd11682688e.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2cd4edadef --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50551--bdcb7a62a23af3f9bae40b5ea2d85575230a4c6c2b4b9ca27f3e639dbaccb4f8.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d5b3c656b3..0000000000 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:36:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8db9a3eb15..0000000000 --- a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3309--f4789358f46b55976908d084ac05c4bb459ea9c04779446a633f87a45fd6d0f5.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1b0dfa6b8d --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..71c50b8ded --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13661--5cb325d16eab9d350593b73c3733851ab776a7d44b76ab40d8c1dc39651c8a6c.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..87cf745d4b --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-11 14:19:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..74cdac5c36 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 10:23:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..74b7fe27bc --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28349--00f59d64cb429a6139cc01e17d408302c55bec8e7eceba3fe128ecc0373364da.nii.gz diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona06/anat/sub-barcelona06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..463ae7463a --- /dev/null +++ b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2046--219824574bd58a06b7f3d88168d807f3946b7b97b4a8b5446e17740b5f2a3483.nii.gz diff --git a/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_seg-manual.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_seg-manual.json deleted file mode 100644 index febff11d3f..0000000000 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:29:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.json deleted file mode 100644 index 2508eb5284..0000000000 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-17 20:29:43" -} diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.nii.gz deleted file mode 100644 index 0f3dffb0e1..0000000000 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8703--99c477044b8d0ff74dcaa7efd85627589d52d9919af6389be8b7928cb7cdbbaf.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_seg-manual.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_seg-manual.json deleted file mode 100644 index 2c1a5d76f4..0000000000 --- a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:47:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..77e68ede2d --- /dev/null +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:29:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..67809211cf --- /dev/null +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-17 20:29:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e6c8df2c3 --- /dev/null +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36571--c2c5dbb418300b6c32e032210f8ed6ee28a70e7fda54dabfc6f6e88d0f956ff2.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..59f157b0a7 --- /dev/null +++ b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:47:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE01/anat/sub-beijingGE01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_seg-manual.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_seg-manual.json deleted file mode 100644 index c4043ce6f6..0000000000 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:35:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.json deleted file mode 100644 index eb391d029f..0000000000 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-18 09:35:04" -} diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.nii.gz deleted file mode 100644 index bdcf843f86..0000000000 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s19174--11cefc3cfbfb8db3455cfdbba3f5ecd94a36e08498a6647975f0916a63d7939d.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_seg-manual.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..55b5737411 --- /dev/null +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:35:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e8bd2d50b8 --- /dev/null +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-18 09:35:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..638d879c6e --- /dev/null +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s19195--c699afdd2381657ac26ee02db297bf5e86340cf89fcc16c0cd6f2b6ae6032dd9.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE02/anat/sub-beijingGE02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_seg-manual.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_seg-manual.json deleted file mode 100644 index 81477fcffe..0000000000 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-29 16:07:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.json deleted file mode 100644 index 506ed242ad..0000000000 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-17 09:16:51" -} diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.nii.gz deleted file mode 100644 index 17cc2acebc..0000000000 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8728--ff7105b62528a522732dd0671024510fa455c4ae45393d4903aa1f1f8b8b7e00.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_seg-manual.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_seg-manual.json deleted file mode 100644 index c93e5ba7ea..0000000000 --- a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:16:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a6623a195d --- /dev/null +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-29 16:07:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..1a8d1edafb --- /dev/null +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-17 09:16:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d4826e504d --- /dev/null +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36736--3386e8c8a3faf25d6dd01bcdc17b0578f77aa36f2e4503bafd53ab4728ca2209.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4b0c1dfec7 --- /dev/null +++ b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:16:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE03/anat/sub-beijingGE03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_seg-manual.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_seg-manual.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_seg-manual.json deleted file mode 100644 index e2233336ae..0000000000 --- a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:13:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7b7a85addd --- /dev/null +++ b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..cda7809d6c --- /dev/null +++ b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:13:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE04/anat/sub-beijingGE04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_seg-manual.json deleted file mode 100644 index 9418917fb0..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:18:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..da1c30374c --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105364--a1ff14b56926ca92116ac446976ea30820db9d48776a7540475c8c3127031541.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.json deleted file mode 100644 index 255b60a177..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:07:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.nii.gz deleted file mode 100644 index c268ef0351..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6762--0622c4f5f9c1902fb5ff80fa206fe212dcf492636ae2f92bd17e813c244cd7f1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d1ff8a2a36 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--18c7102ed9b40b77ab9b4e04eecc53d817ba4bbbe64e51c2a875b7888e503d39.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a115fa6e2a..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7248--0b055ce2d3a022791504d88e3e8e4e6b606fd1b9d9332aae8e4382253f137256.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fad2a68779 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7242--c4cde5c55cbe1a868b4961907d6c29fe062835d3c96806c0b3d0eecfeefb1da5.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..50a08d8e2b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--5b6b4044310a245bcfb0aaa39b502a9884a173cd9ee0d15053fff60ce332ce51.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index df741f02f1..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 14:55:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1f435fc810..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3365--e37d89941d1cafc3848d97444bf1f3c38f767640d828baaba615bb4399f36907.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..29ce574304 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 14:55:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fdc16c336 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13770--984feab3a87b45a0d64197244ff70e39ebc09104d678a625de94c1f2e685279c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6cd49c616c --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:18:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e5a1bed3d0 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:07:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..06fec59fe3 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28269--55f3ea3fda5cf1ddfb29a35c0d2dbec704288bb1362d840788344a51ebd571cd.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..59bc3916a6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--057914061d7c5506e47aa534d5997ffdc2cf77b3f3c4d9ce819fb22ca73d04e6.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.json new file mode 100644 index 0000000000..65926562c1 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.json @@ -0,0 +1,4 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2024-03-07 17:05:18" +} diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.nii.gz new file mode 100644 index 0000000000..3fd3f1d53f --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_label-discs_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s69996--0080756e1cf06d8a03d7c5ddecea2461f53e4ea1dc5e7436cd22b975cd9019c7.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.json deleted file mode 100644 index 8c0b899d68..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Nathan Molinier", - "Date": "2023-05-16 14:23:18" -} diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.nii.gz deleted file mode 100644 index 169ce967c3..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_labels-disc-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s69989--8175b018ba2fe171b6ae7cc31671ae61747bf520a060fe2f9a005a134540c8fe.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.json deleted file mode 100644 index 06868c7793..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 15:51:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.nii.gz deleted file mode 100644 index 90ffd67fa1..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s34674--436eba06c3f034115d9450ab05df14413e080417b84be0e3f257a6f1895730ec.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..de0acd21a9 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--3f905ba8f390016600512167b1a1cf02ee0939ae55dcdfb9df027220c3511cd3.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.nii.gz deleted file mode 100644 index 7ce73443a1..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14747--a5c0e0b8fd4b510b8bc1604ca5f6332259c7f1925a5160dc639f8083fc006b1a.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bd8c46028b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--b8553d6f0ce6a8141ccb188921b3e9ce695f8f180fb154ff0f25f372c9186cb1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index daee8a1430..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:55:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2cfa76ec01..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3354--7bdebb280b2b6364e31d65aa9ac8c113c4a184b265c39b6902b754c3bb0d3602.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90be04eef5 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:55:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cf4f7d02ad --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13811--7e06b1fb744dfd82c1ce331b73b2f3ec860c3050565b8342346b1484d1721535.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..033f00bbac --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--1eb456c74741d5661e3e8b04e1dfb3adae48a84f961c6741a6f96cc83d6b1510.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ecbda8510f..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:43:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6b7388df5b..0000000000 --- a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3294--cd62301cc5e90d7dfaaafc562182a55e51e804bdadd20258a57293fa0b78b919.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c5ca41424f --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:43:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2b34555a6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13548--881a69b194abe220e5342aab8c7c628c7b911b0f60b6ca617aa01f7e8418ed12.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..38f6b664dc --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 15:51:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cc66b4b477 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s287790--6e1189b98277df7135729c1f370152882d830bce2c405b4af2a64868bcec9bb3.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c2befdc348 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90d6a5e986 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14768--ced94394a1a830d9be5d16a929cc03d55e82a5d40d90249a314d209eeb8b5fa1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b53135d10f --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2085--cf1ebeb0551ca56561ddf8b6c89c4a93c3e7c7a56aaff7568aa766c82f592656.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_seg-manual.json deleted file mode 100644 index 16c2506e6f..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 22:26:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2d35c45cc6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105331--d320a7f7c1209c75c7d3066b67ddbc3251eec45f6ff13b593c064740688fe79c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.nii.gz deleted file mode 100644 index f940902c7b..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14735--8b7722b31ce7125fe0d48067e41382bd016e5d29b49ef11a21f15074ce5cd54c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e787f93047 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50578--d5fc7f7e49ad5223e6a2b1dd5ac56bcfd44bb1148d6af0b6997fb355e74b34a8.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index adb6d29838..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7231--d434a377ca374835253ced3933af788b46ccb35cfdb15c09f22528f115175bb1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..99f4f934e6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7149--687a5a350823c9d9a5726be23c27d90033d39554456564466b463128b314d4b7.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..df62319dc6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50565--5b7be5773407929470a2289e4e03145fe455bf3b5b9dae7b147add6c14e0730c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0c8febec9d..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-15 09:18:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b8b1bbf697..0000000000 --- a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3311--0dd0c01ff034577ff8336dcab7d62490b9475c1ebecf1f202a98f39be0fb693a.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..32674f958f --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-15 09:18:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0bf7032cea --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13650--9a7ce419434013ade8dd957e93dbe0b8e83dbd329ca8d0fcffc4c064db9380c3.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fe1bba90e2 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 22:26:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c2befdc348 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94be062409 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14756--e8017bb7aef99278f7dd827731a7ef50c67c80ef10ef22f7cee7b3ae3fa0333b.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..25df26e303 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d09db471e9 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2027--61935785a84d6b58c3b5cf535260b905275d456bade10128aacef4bfe77b7de1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_seg-manual.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_seg-manual.json deleted file mode 100644 index ea41f16f09..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 22:08:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..993863d9bc --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--fbd42cbbdc69a77d2b251dcff94c527dcf543477a33e2e4fce8da6c8fef4a88d.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_seg-manual.nii.gz deleted file mode 100644 index cad4ead509..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14703--7446a8861109de09c5754ebf4331884984316297e3ca69e06ea75097f7f08ba8.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..026866e783 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--c44057986403a656e6fab6412c00a064b4e46194f5822a1c1940fcf34e4e6ab6.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 91ac63c169..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7283--daac7a71f122bd4aedda45a4c2c2429815bf64d209012075cf71c942f367fb71.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2682f9f2e8 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7239--775fec910999a1bd25331323fbb357429fc890c7bc720007f2fb6af038e60ada.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06b2cebdba --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--4ab57dbf8e5a5fcdf8e3eb145522ab71045fbcca1e8bd239c8433510c1536a7c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6e56128283..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index db0a6c8c97..0000000000 --- a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7228--b3a7169cb49763532f10a1eb181002516812453daeddb505ea4d5ecefb1d00f3.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d20bab139b --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f112dace6 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7194--17926c85f1c69a7b3869ed509e2ebb50219d4685701c9924d2315421828f1125.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..895eb6bcb0 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 22:08:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb36c4baaf --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14724--6b3143d012e5ed512864f2d3291232f84a05ddc9772283bbb499166fbae45c79.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8ab5b17d85 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_seg-manual.json b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_seg-manual.json rename to derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e2c54332aa --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--82abfb8150b856bdbd4bd239ad6828c667caf88d854dc20ff3dccdb2723ef060.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_seg-manual.json deleted file mode 100644 index 3e09252378..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 15:59:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..89754a53c3 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105361--a26461bd853d760a65201714a9fd7ad888261de12ee76fc7dba61ab56454f913.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_seg-manual.nii.gz deleted file mode 100644 index bd94876fdf..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14849--fc144075d201c1b834ea46541c41f5ab00a6a8803ade19075a7ec17afd5c6288.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_seg-manual.json deleted file mode 100644 index a2206f59b4..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:34:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..65ba5dbb9f --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--9527211eae25f43cc2e49619c4c18ea907e107caa42f4d9e1baa808140fde392.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7677b38214..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7342--e7766d46ab0c44098e7fa9077a37a700d17e584205ad34bc6437501afe7d006d.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d45db66e1e --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7338--2ff4a54d9493abf1c2e061e76534b78ff6e478d9415dd2c83e4741099b237665.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0fa7cb014e --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--c8ef1ca04d462fe89d39f6fc1b269fb7acf6f6a91a485206ab588cf98b582b9c.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8fc3916650..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7155--d2002803e0a7e1057596537e69eb0eb13cfa7ddc161a02a6fdf4286836b11ed1.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fbced517dc --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7138--0bc9bf025cb7d1c2840777ba248cacc77500abf3dc050706074e7c6f0ba20c53.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..cdadd08a80 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 15:59:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aa06264305 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14868--239ea004e021649d634ce05b8dba96ca238b184eccc742cfed28a4faf3e5b481.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f7a2adc5a3 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:34:40", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_seg-manual.json rename to derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..24207b86ba --- /dev/null +++ b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2076--7e604605e411839fa1cb73ac418ef6383ff1424ef97ee271bb2697f743345a80.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_seg-manual.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_seg-manual.json deleted file mode 100644 index a6f8b9f5e2..0000000000 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 09:16:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.json deleted file mode 100644 index a78878eea2..0000000000 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-17 09:16:04" -} diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.nii.gz deleted file mode 100644 index 2a3b2ac4ad..0000000000 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6830--ea0c71bf0ad933d007f80b5591a37819324f2a40c06d0000111d21e94c58ab47.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_seg-manual.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_seg-manual.json deleted file mode 100644 index 92be01a744..0000000000 --- a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 14:30:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e086799557 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 09:16:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..79e77f4f47 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-17 09:16:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f26b0241f6 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28325--86721632ad15b45856e0f603cf8bec2d38eb5ff36b265017aef6e05c7dc99ef5.nii.gz diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..eea2fcf48a --- /dev/null +++ b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 14:30:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio01/anat/sub-beijingVerio01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_seg-manual.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_seg-manual.json deleted file mode 100644 index a0f7e1e678..0000000000 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:08:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.json deleted file mode 100644 index a0f7e1e678..0000000000 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 20:08:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.nii.gz deleted file mode 100644 index 6a1975b3bd..0000000000 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14861--7a45a6bd0965182834e8d64a13e90e4f337dd9ffbc440be85384b8c74680be56.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_seg-manual.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..50958d1c1d --- /dev/null +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:08:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c72f5beb73 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 20:08:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..89c33288eb --- /dev/null +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14882--b63c4347bbeb53e777f0bbd159d7fe49742b05160ee182f70de07e8f2834b1f4.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1bcc95d82d --- /dev/null +++ b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio02/anat/sub-beijingVerio02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.json deleted file mode 100644 index 651da7b3a4..0000000000 --- a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 13:56:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.nii.gz deleted file mode 100644 index cda5c3f725..0000000000 --- a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6808--f9a70c357ce9794ef92c95b27429ec0e9f5672628dc5de39724dfaf8f878dd68.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_seg-manual.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_seg-manual.json deleted file mode 100644 index 651da7b3a4..0000000000 --- a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-14 13:56:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d8eaf718b6 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-12 16:15:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..4eabcb9160 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 13:56:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..477a9f3b86 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28359--39b87ea01b331a3630a86f4899a073954969895d37fef462aa221566604a6e4e.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f1fc3ccbac --- /dev/null +++ b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-14 13:56:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_seg-manual.json b/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_seg-manual.json rename to derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_seg-manual.json deleted file mode 100644 index c1d7806ae9..0000000000 --- a/derivatives/labels/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-12 16:15:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.json deleted file mode 100644 index 63e262d8e1..0000000000 --- a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-17 14:33:25" -} diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.nii.gz deleted file mode 100644 index 3faaa99b10..0000000000 --- a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6823--09343beb192b1da17d891e1d7197a902fdfc29e49878773900f93b40c712def7.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_labels-disc-manual.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_seg-manual.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_seg-manual.json deleted file mode 100644 index 8a05c1aa59..0000000000 --- a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-07-07 14:33:32" -} diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..cfdd888b5c --- /dev/null +++ b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-17 14:33:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7aa3a96456 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-17 14:33:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c293fbd9ab --- /dev/null +++ b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28379--80d7900ab8916fe0fdb7a21273653d82d933240b50959c6c098b7d9af62fc558.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..566848c659 --- /dev/null +++ b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-07-07 14:33:32", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_seg-manual.json b/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_seg-manual.json rename to derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 63e262d8e1..0000000000 --- a/derivatives/labels/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-17 14:33:25" -} diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_seg-manual.json deleted file mode 100644 index 1efc6623ca..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:16:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..48aeac0a44 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105377--b92f085348a3ac10785f75c15cc6320f1ed04fee43fdf72b9eb2a2e18ec137cc.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.nii.gz deleted file mode 100644 index ab2ce57fae..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14995--8e01082a70a0a9509086cb05ae759110d867810c161486c15ca4f754b78eeef3.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..85e445a7fa --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--070ea6c6fb3c3132b228bb08b72115124e04ba1fbaa4a0d6c201f40270ec16a0.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b8c4651f55..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7352--e60b6b36eb9ed565409409f5e8f0c024146d393c41df77725376a8abf1694275.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..98b3c9fb74 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7283--609f5b033aad84c4619db635b63f91b81b2a88112fb50e5bcce30651e2b9efb4.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4837e4ed30 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--5bb48e2a69f4f9dffbcc2c2bdfc4417ae88084cacdaf4de2bff61371295ce752.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3264e3e9dd..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7213--9677cda3ee9e9476991c9f310bdd1d911c3472a5bcae5a8f03665d662f640804.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..05221d6b28 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7180--fa3a22ac54d2724206be205aad183a6d1f37bce3582629ee7a9fff557add5dfc.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c4552c30a3 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:16:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f75bdfe5fb --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15016--9dee57774330c3f8e5660dc117cd50376b9ad0ba930ac96b6a50f951a058bdd2.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8ab5b17d85 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3059d95468 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--bf2fc46f19a1db6fa6734cd60af1513a21e5cda4a091e165291dc3033524d2fe.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_seg-manual.json deleted file mode 100644 index 67c2993697..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:21:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2385e838f6 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--b6420626ff6a31f956ac44d55dbca16542a7137082b6682c9f472b773ec69e33.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.nii.gz deleted file mode 100644 index a0c5735e0e..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14967--a154342a37953644fd3bdebc7689dffb973303b75309880e4feb6d126fb059d4.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_seg-manual.json deleted file mode 100644 index 65a8fbe9c0..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 13:48:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d770585db6 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--487f3532ab01dc18bf08f9b1db61de5e5b04a082145650bfa4005bb25b8d3bd6.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f99a8e3df8..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:03:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 23a694d234..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3465--6dcbb0f801869f0a8a04772592a65829cc0c68566c4bf0f243a5e486fdf0ceeb.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fb35cd831c --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:03:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..781019a36d --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13924--eb7c0eddc64457547d2592855fa69c87d3f1035efa76a061d8b6444f07b19b35.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..97348dea88 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50630--50683d9cdebefeeadc6a3892e31cb7fb9a626691ef3c5039d34fe6ce29f867e6.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 04fe238da0..0000000000 --- a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7172--bcb1a81c3df9c6a1f491436b9570c5931eff3c3abf92ccdaa41fc5154cbb6b10.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz 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a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..795c54c61d --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14988--6c7f5202d6c11e6dc5c042b3e2013e8037a003654508993f55d4207b7725c51d.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ade817cd0a --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 13:48:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c0a2ba42ec --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2107--7e1a2dfe5a23e68aea82ec12eb6b2916946b4366dd5ef20cf27bdf745163e7b3.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_seg-manual.json deleted file mode 100644 index bd66c8334e..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:28:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.nii.gz deleted file mode 100644 index f2df0a89fb..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14909--5b11d5264f7a9c0f674e069bcf31920f77de73541f6ffd3031bd56b43e05c666.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5f80e68c0 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--a3a490160a5bc3bd3a634b21d746c2503cbfe3c9a149c5c47bff03faf1a0b17f.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..19aefdf978 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--a8d6d4f71c235adc5d1fe4644ec721f945b97a8b5fc08b25167c2ecb268fb17d.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 031197d48e..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7208--ad957396e055abb5f182cae98fbe26de9380894ff6ce5c7bb0be24601a1cdba9.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..41ccdde936 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1654de18e1 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7172--2dd5d42c2cf4e9bbbe31e07d134bebb6d6fc9dbf516e74332d2d2d766f7fb365.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..cf9f25f502 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:28:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f88e4ae67c --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14930--4d2c8a1d106eefad5e81ef3608ddb48cd4fb91887cad7af3986e22e1491b7bdf.nii.gz diff --git 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a/derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_seg-manual.json rename to derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9c417ebef5 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2103--b02a7ab452f836eb411f0bfdcdf5826b081243469f6e4a4fd723b093af91b257.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_seg-manual.json deleted file mode 100644 index c16d71d098..0000000000 --- a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:30:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_label-discs_desc-warp_dlabel.json 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b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1cfea610f2 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--c0a1148581cb01d975707ce68b2497bc99ac95b99c444924aef8191cb7ac6448.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c2dbc2ea61..0000000000 --- a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5c22c87d0b..0000000000 --- a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7329--4997f156e752128336d7df0e5ddd72f1c80f1e1c8317f80fe9ca603db464b5f0.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..50a437925b --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--ff98dda586f3dad4daaa2e34621210f8c51c86da4c71f020c0db31c55f544a85.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index dc141d404d..0000000000 --- a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:33:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3df90f4f9a..0000000000 --- a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3394--2cf30ec1ae074da0f266d93ce58004c93098ecb2e04bd2742e003a94fa81e765.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fd2b7bc842 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:33:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..38bd5214f8 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13808--57ce76ef65fe00c8a50bdd02d352976b80802324fd87ffd45d4b2750a4bfebc3.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a873311f32 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:30:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ded2092836 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0cb5b8d4ff --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14941--486908cc94f5afe70ea9e8bdbd9b7589bb349fa7ac364f5365e614dc4137edb2.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..894b949b94 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_seg-manual.json b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_seg-manual.json rename to derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5a739b4d86 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--471d5347afe48765917971371caf99aa160c2d9a9b56486a4bc213bc7f2ffeae.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_seg-manual.json deleted file mode 100644 index 95ec7b9b4c..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-17 19:33:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_seg-manual.nii.gz deleted file mode 100644 index ede9524d94..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14966--e0f65823e10f302d644ebe71223819b271dea139524b405fd1a7f756727b1ce2.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2223975809 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--2f8cbecf43e1798a3f198ce95bf53f0b21609d08cd60784e838111dc2d429d59.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e185b302e8..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:31:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8311dfd876..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3458--3950f6e906685b94c4ca93de7af2de0d78e308b40fef7651d0c7ae2f21e757ed.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c020e72eea --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:31:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..74286302bf --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13972--ce41c7cd0e89635e58ad0507f22fe4270b0777c7ea85f42c2bb643266871ceac.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..30a0ec42ee --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--78e9f0b45f20f77e9e5f94255ba9240425fc4256ad715a5ba3531b4e1554d60c.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6cb284a986..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 09:55:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 4eb8aa17a2..0000000000 --- a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3391--cd50f64cdd10b77fe54421f870eed217cc5a1e4e57f2b17ec98c2c63b901ae3f.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37fc56c777 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 09:55:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc687367f8 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13860--b6f8cfe1d992069788dd6d6bfe159498d6f475c48b14fd669fe779855067cc7b.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ea01927927 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-17 19:33:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4f20f4b500 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14987--79de26bb0e20897e820c4b046a30a06b80958eb21cac91976ddec0d6532f451e.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..894b949b94 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3251406b23 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_seg-manual.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_seg-manual.json deleted file mode 100644 index 6529168366..0000000000 --- a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-18 13:02:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7a4b1362eb --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--e087c87c86010b001904fb027e7605a8362c4508749be1101ed7902b4e277ff8.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_seg-manual.nii.gz deleted file mode 100644 index e0a7278e1c..0000000000 --- a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14904--2d049123cf90ee8c3d1823932918f78924321a553bcbb15466d807f73430635f.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_seg-manual.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_seg-manual.json deleted file mode 100644 index 5320cb6fc5..0000000000 --- a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..686ad35f1a --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0a9e689eaf --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7330--03de8c64cf666efcc75453123c487dda23d83ff9a3596a38ddeae71435437e47.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..290fb83884 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50591--a41e465e220985ecd325c3b53695409c5306558b887a6a905aa6d129a2bb8b58.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index df623bfb66..0000000000 --- a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:48:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0368b83a60..0000000000 --- a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3353--cb58207e614ae00da0f18c8027aee3eb2c9884eae42413e3f30f8d8bf5852f5b.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8073fc2ba3 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:48:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc73810322 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13740--eb10b1eb86e2e381e9d39af1f7c9482499112659b8d1580274290f9bb66a2257.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fa5ccece7d --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-18 13:02:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..27524c99ca --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14925--a0163a317385a9282b03939c06314d91279ed00ce2fda09d7b126e84a29cab26.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..41868ca4b4 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:05:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_seg-manual.json b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_seg-manual.json rename to derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..58c591d468 --- /dev/null +++ b/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--781659ab64f00c1644bf8e92a47db90f8095c1c4430812ed42e23a51b679e4ad.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_RPI_r_labels-manual.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_RPI_r_labels-manual.json deleted file mode 100644 index fa5c9ee359..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_RPI_r_labels-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-30 11:57:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_seg-manual.json deleted file mode 100644 index 5a2e1124d6..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-18 13:07:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a738d06383 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s137552--4efcebf13c3a413d981c51d0eb755ac05c55b8d558dd54abda73308894f65487.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_seg-manual.nii.gz deleted file mode 100644 index e191da0dec..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s19290--070296ab73645e5e357dfa93ae62511408ccd8cc3c5f1171e7ea37958c20daaf.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3264c79950 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64341--d8c62a5e9c00cea638e13cf1ff7c21d5c219c58b9bb36563303bb0a3aa16a12f.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 3c265028c1..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:12:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c4d8d09d91..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4658--ef19f2b51a90bffb3f17e986802f1c9dd1d10fb0db07fa8da3fabb4f5d17f31f.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8527f1fb53 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:12:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..82a13c12d6 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18602--4389e9498e5c58d7d827e8ac6137271ce7f08af1cece4b993c735598e115a2ad.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2ac8fe35ca --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64353--074e274087195eb75ab2f166edbacb7df8e528a8a74c7bcce357664bf5084712.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b448d8188a..0000000000 --- a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9467--ffe5edb4f88eb87b5e98ea05be3bf7e9fb22f6ea2de455e593938f858decefe9.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..686ad35f1a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6e9e4f425b --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9601--f9fa1dd8fda0db2eb6db9de3cdf955fd614596aed01d791299b4936b8fe07f29.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0d6ad61d95 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-18 13:07:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..3b21a03c63 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,13 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Author": "Paul Bautin", + "Date": "2020-07-30 11:57:36", + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f0db7764c5 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s19311--bec870eb36ee33f2468e96f14b2433ecf413b4c10c0760353a79f1ad7b417fe8.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..894b949b94 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_seg-manual.json rename to derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b62efb4784 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34601--0cd9a8e374301fafbe15bbfd461e28fc46ea7ab99e03f1097e100348dcab509e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.json deleted file mode 100644 index bdb65692f1..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:14:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.nii.gz deleted file mode 100644 index befe17b665..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T1w_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40755--be19086fd0fdd5ddd0d546dd231930b3695ec38522bab9db69802bac3966228e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.json deleted file mode 100644 index 32024f5b15..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:32:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.nii.gz deleted file mode 100644 index 1a2e3ca18d..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8660--95fd4a01cbd013c5f62898d81f6c6f7464d13975658a6b7d5599ee5b701ca123.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_seg-manual.json deleted file mode 100644 index 512621a0e8..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:30:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index cf351901ee..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:47:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 513f344437..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4687--1e124ab90800015f519de631b1c84e7a2c38764389ed9311d69bd3a41d4da1e8.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8cc7c82d25 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:47:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..af6ebf92ba --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18689--04d73d6aef24428e569a87e04a675f18234603bcb52ce5b36847abf1595c6d1c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 83a86edd41..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:41:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fb98f0951c..0000000000 --- a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4512--de660292784c6da5a6e8a64a3e444080fde4160a95affc757480b3828addbd70.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2b6a1a0881 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:41:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a31461a45f --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18215--ea5766f793896e33f957e3dc9cd4ecf0c99621c06c9db3d2eabb43f2595957cb.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..17ed08fdf4 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:14:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1c7bf00d33 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T1w_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s175383--40d10fa0d5b7b070afc68e019e3923c78a7bf2bdc17476cbf7a7ef81528202ca.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..595f76ba52 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:32:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..69cb04fbc6 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36591--5169bbe5112b5ced6dcb34fda23347136466911021f7a1d45c6dcad447dd8f22.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8d81d8d9bd --- /dev/null +++ b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:30:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb02/anat/sub-brnoUhb02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb02/dwi/sub-brnoUhb02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_seg-manual.json deleted file mode 100644 index 261e0443f7..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-18 13:20:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.json deleted file mode 100644 index fff884a6b6..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:52:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.nii.gz deleted file mode 100644 index 3f90bd9177..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8733--bdb7bdf47f4bedf87ddf395a91badf94e4aa5d2b4cfb1f7a4e4231088670eaf8.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_seg-manual.json deleted file mode 100644 index 18d2e3796e..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:39:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index fd4f86855c..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:17:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 81a3c5ffae..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4628--f8a424b1f2356605e04aa04b230f0a8bc5ba45e14e60e039e41de0193dc2f1f3.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..eefd305c20 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:17:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1e390d9526 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18462--6020811fe247a7144f51906e2b1716c98b29a1ee1ef89f6280f259583a69b1c6.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index fbe52577af..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:44:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 4c9175ace9..0000000000 --- a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4414--eadea650613d04b5db01925afb5d93b30cc71342785c615499692950be5c8f5d.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a8bdc14c0d --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:44:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..08bcd75980 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s17941--d202b6a1205257ef5246c1996fb3d40501ed5b743cf8e11d2f9bd67386d1679c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1c64a2e632 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-18 13:20:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..cf9cf0af5a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:52:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ceeb9db5b8 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36729--389b8bc6309bd68bb33c9e7edfb6e2d7095d14e3effa62b6a2307d132ff82f08.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a2ba2c6f63 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:39:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb03/anat/sub-brnoUhb03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_seg-manual.json rename to derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb03/dwi/sub-brnoUhb03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_seg-manual.json deleted file mode 100644 index 93448d97d9..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:16:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8c3b8bcd55 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s137537--2b3e15264a8c92e80fd478551863e5677a930b97e935b4e4386c412f92115d35.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.nii.gz deleted file mode 100644 index 0ab3b3e75e..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s19208--d0f7cf5b9152dc44372a13018390cbb55fdddc658aa03b52715c83963fe83cec.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_seg-manual.json deleted file mode 100644 index 84cbce8b1b..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:13:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..292be5c253 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64355--c9da29ef5e642588a1dcb175801879a3ce5a30ac6d70835b92bd399a5fbabfae.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 90ef7b9fe9..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:45:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 94f7374ae3..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4617--404fc9475fd05b4deb18cb1f787750fc748f14a29d86539fc69b36f035215458.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6b0437cb4b --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:45:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..59f19c2b23 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18432--127bf7224dfa23f48471fcb113ed8fab8dd2770097e5fd2232357c5b8a1329ac.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a8580841dc --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64351--d90e9a8379f56d5b7b46a994d99a87580dec8c5c4894d27b3753baa1bc107296.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8738578740..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:48:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e798e7173d..0000000000 --- a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4439--1045d3eb63a97962ce1d8a0d15770a295d35dd8029d8064cad54702e8566981f.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..81e9a88035 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:48:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff5319b4ad --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s17958--7814958a78ff0d9c2ba97015ca70792ce6dfcabb70215da8c862fd90edb6ffa1.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..93eccae5bc --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:16:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0de80b4a72 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s19229--10d6a4aafb2ed5947d9573bf33580ed20d877975f41e3e2a6dea694b4d43e1ed.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..80b5ce310f --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 16:13:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8b7371861b --- /dev/null +++ b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34593--da363382705e93fb66b5a67e575c3531f9113d5b883d61c3d6050115d20727be.nii.gz diff --git a/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_seg-manual.json deleted file mode 100644 index 9f16c33e6b..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:28:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3974e3c08a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s137539--2d0a7d1b803f52ab6b33c0b2951849df15124a076f24f70b7d35ba4241fbc570.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.json deleted file mode 100644 index 244316de5b..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 14:11:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.nii.gz deleted file mode 100644 index cdf385da2c..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8720--3e48455e0b301980b397927879db8c097b1effa8c11088b90d4f9bd16c932563.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_seg-manual.json deleted file mode 100644 index 39197838c4..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:55:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ed15350475 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64361--46c71e314cdac6bc2ea52f070657554d0fef2b1164a78f89fd6d671c83c33162.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45db483cac..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 14:00:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2fa1543628..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4678--53eb4fe1f426a51fc672681b9f358b1e1a82e3e4e7c9d76981d017a336431c1c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bbfab5bb6c --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 14:00:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ac3ab9217 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18695--27dfde404b96b644fc4635437bc8a18c3f92fb09413cf2ad1adcc71faa2849cf.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..be79c2296c --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64353--e431585d32cc55422631fef4ea94f68020f1ee861f6278942dbcdf4c150ac67c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e751a999d3..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:50:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 17b62f2d4e..0000000000 --- a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4454--7ab669f99b29270386b3c9afb32652f07663b8c3520cebba2234b363a2176583.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1975c24a5c --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:50:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4630fabf7d --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18017--ed59c216acf747a000e07081e997f6fa2a0571697bd6803860fcf0f75721d21e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c61851c9f4 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:28:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c63052bd94 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 14:11:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..731f8a0939 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36709--207c18fa0cf4d4da961bf8f0e9740e1cba52420da57b73827899190104317d68.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e927a7592e --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:55:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ab8b4d2a5 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34581--cd643d413f6f2aa34a27685a5189cd483eb62e8a978bcccea3e0cec70e6b2e48.nii.gz diff --git a/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_seg-manual.json deleted file mode 100644 index b513e83c38..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:25:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5d095ff126 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s137539--9a3b19b1f4f36bc17ab82e9c261aa5d7a8a3e24a7db319c378af6a546836d1dd.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.json deleted file mode 100644 index c9d59daee9..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:55:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.nii.gz deleted file mode 100644 index b665a46539..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8694--36b1d66f028ddf67a8b5b077e7292f6a9b0602992920e9bd4765105872c75814.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_seg-manual.json deleted file mode 100644 index d9a2eaafbd..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:06:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..eef3a49ea9 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64364--23e7329e1b433d33feebaf6a27ad5f0851ea2944a8403170eada30438ea8ff78.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c979f18387..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:16:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 650c502ea5..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4505--af5118e37ceafbb3589be087c3f88f54cb84a5a76cb2f66a1ac0bf74609a19c0.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..cc74cb47cc --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:16:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e65c874842 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18278--f53bd935dfb8a622926f442b2269270d764eb0d000ac479b0426ec5bdf6058ad.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c5b9d1b38 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64349--d3ab49d6d7c3db7817c311b1e672441c55a572e57e001121b2f5d8f15bd7f4ba.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a908af9d1a..0000000000 --- a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9466--933b1417e420edddac2bd353067732708ca7f61bf61d5a129fad9e05d84f6b45.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..686ad35f1a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d3cb24b376 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9404--6ebbed952cd75b039bb2a6fb64fcc938ea94b8326979b49ba46c36655da43930.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5da130fc4f --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:25:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f5bcd7e129 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:55:35", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e605254462 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36656--9595412a4a4c9306b1b54f2fbef62a60c6d8ac78359cc5a89d8d6c352144e073.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..145180a099 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:06:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_seg-manual.json rename to derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0db9fc57c2 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34595--ade2687922cac683af1ba6f0080d1cc7caec3599b875e5d987816f5762e1f1f8.nii.gz diff --git a/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.json deleted file mode 100644 index 594c547bc9..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:33:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.nii.gz deleted file mode 100644 index b76ee2996a..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T1w_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40551--086c00d83a2ee1a224d4e0f652ecbd35d06d1060530a92599999ebe721cd6180.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.json deleted file mode 100644 index dfbc642336..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:20:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.nii.gz deleted file mode 100644 index ebea0b7568..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8679--d3f44adaa829c2c1f20157f7c8868cabf72533ed798a1f63552439554e40c373.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_seg-manual.json deleted file mode 100644 index 4be61d0e30..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:07:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c234768c6a..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 14:03:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e32d5c169f..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4576--4752a0b7135e0f479b494c7ca8c0238de016ee0e19ece696c8d016362fa0a48d.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c773f5938c --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 14:03:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8331eade7f --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18366--0b50c7c118be78211ad3d5413a204082eccfd13a48522f1a87f449b657c90fbe.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index aabe04b6c8..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:54:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 5965587254..0000000000 --- a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4410--7973f4fc14fbbf01095fc8b9bbe31c404db03503b512fb301e302271de2bc26c.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b72b3b470 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:54:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1db1754018 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s17905--a3c031fa2d557aa41c38eefb0d61f3abc9a40f5f8f1450905c53531033595e23.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f99fb6b965 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:33:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.nii.gz new file mode 100644 index 0000000000..440c6fc687 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T1w_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s174658--2f7a39feaea36ceebc8175fbc03754cbba83850c094f51d3764436fcba5a0b52.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..18f4e55831 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:20:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b02378331 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36662--2d1d599677d6ab7719e3f25c614330fe12e45ddb7e2f964e70fb2f7721243d6e.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b4e6e9431e --- /dev/null +++ b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:07:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb07/anat/sub-brnoUhb07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_seg-manual.json rename to derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb07/dwi/sub-brnoUhb07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_RPI_r_labels-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_RPI_r_labels-manual.json deleted file mode 100644 index 5775af959d..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_RPI_r_labels-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-30 11:57:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.json deleted file mode 100644 index 6de9846400..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:43:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.nii.gz deleted file mode 100644 index 9b27884015..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40584--4dec0fa0c3ca5069ce6bc1d3abff2e6a401d87df2f280462de45396251157e6f.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.nii.gz deleted file mode 100644 index 2f6dda9838..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s19394--c5f313d767253f2093ddb73b263fcfff518fac4b049291374c6d258c4c57978d.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_labels-disc-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_labels-disc-manual.json rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_seg-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0aae8021d1..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:35:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c5e79d5863..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4699--dabb48e9a247e1dd47672c194d07501dbd5357971288551263c1e3d7cbbd3043.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b568cc73ad --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:35:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e26398fc06 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18590--aa544b031ad5cce1100a562d8832a75ce8d879dd90009042167dfcadbea7b24a.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9a7fc89554..0000000000 --- a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9557--b5dae4319a755d86311df72a66830b3045be8f550540bd79dd66d81eb572acb4.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..686ad35f1a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b1ed4456ed --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9609--031cfb655bd4792ccdbf2f5920feae7f534ba961fb6511599d1a0a69970c10ea.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..bb73c6588a --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:43:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ab38820bb --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s175213--0f5a19b38048a42c456b9dbb1aae37287076c3f54a5c9143c3f005e0d6845a00.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..45ecc00e36 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,13 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Author": "Paul Bautin", + "Date": "2020-07-30 11:57:54", + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c1660214d0 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s19415--0956821dd9868fbc223bd594cdf9ec68bbb80bac6d44d092f1e53445f0745354.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..894b949b94 --- /dev/null +++ b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb08/anat/sub-brnoUhb08_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-brnoUhb08/dwi/sub-brnoUhb08_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_seg-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_seg-manual.json deleted file mode 100644 index df3f06b271..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:10:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d8da58b0f0 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105340--a8200ef0e54736f8cca5438484f381035e13b40b3fe077c4c1d28be8369edbc3.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.nii.gz deleted file mode 100644 index d2123a68c6..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15084--d02a20f7e655b500071e64820fdc8be4f1eba5b5fbb6f6988abe64232743aaee.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_seg-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_seg-manual.json deleted file mode 100644 index f466c3f8f9..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:54:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..02870e68d0 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--762d5a21231cbb83c6ce0f9544b902d95b5b61cfd71d2032ff05882a67277907.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1c8e651710..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e408b73969..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7367--dc30acbbfceca33f9655876f394ec25006369b194c2b238c1f3a3ab4a909630d.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..686ad35f1a --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6709aecbec --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7365--2694d51a2977ebf12ee42cbdbbff4735f2f6aba10b6343dde8efd49dd93e9fe3.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6bdcae974d --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--e4779f18d804c7de50386018f0714011fd13675e7a7f627cb9862210669a9395.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 29878e5579..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:40:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 17c544999b..0000000000 --- a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3370--8184cff435879cec07037691469c76dbf0d00b5b11ce3803380d54e873861fd5.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..65491775cc --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:40:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e50c40e696 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13846--a23c393e834db7a27cc186ed044243a03848841d0be1dc99764454fd6472dc69.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2bc12099a9 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:10:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..22005499ce --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..799f76d4fd --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15105--0657da0d313f51740ed07efbd6cb8dac6c71bccbc30ee94a1449934d97af6f11.nii.gz diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8493da9685 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:54:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff01/anat/sub-cardiff01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2dc62d4630 --- /dev/null +++ b/derivatives/labels/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2074--1d5d32da0dd0c6aba16f3cacafa9d362bdc1deb12219a6d6ea7cd9984ce557f6.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_seg-manual.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_seg-manual.json deleted file mode 100644 index db4dcba99f..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:27:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7ce9b094b6 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105371--4315ef25a131da35db63bd77f326350a222322662ac33f01faec2766a110bd67.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_seg-manual.nii.gz deleted file mode 100644 index 5be95dca99..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14998--68148b66cf93c2155e7e8bdd862e42f2860cd41cee93b5faa8fa14e99afa7824.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_seg-manual.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_seg-manual.json deleted file mode 100644 index d622b2e7a0..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 12:58:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..35daddb09d --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--ae77201d91f42f4e6653ef448eee5ccea49b3fe232d77b0e8393d4f90ebdc622.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index be5a7dc70e..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7363--c59f0e0ec571ec3b7c93b3d07ebb42d8b865d3b927d3a97ed16cbe1139506d54.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a2fe10f17 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7342--465a3262ddeca9622aef3fddac2370d113be31003211cda8375691e9216b05a9.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f7a943f252 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50598--1d055de0cfec385f41280c8ea8f2873211d68f434586b0c113cee9e8bcbba078.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 94755f0d64..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:39:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 56f29d42b4..0000000000 --- a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3354--ec92f54bedcbf93711d2dac03f8765bfa2bf1df4e6a2879551c54f62dee40a47.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..82d3b2dced --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:39:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d9a81dd79f --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13807--64a0e43bec1368e790e7cae1aa5de2401f8613bcfa148895e22f71982fd2a777.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9c9a8de2c0 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:27:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4562b0b26 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15019--c4cf96f5f6bd7bc70491218ce21d12faf44a8e9ecc605d3c70fd3160b94b6e54.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9e61bec319 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 12:58:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_seg-manual.json b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_T2star_seg-manual.json rename to derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fcd14866bf --- /dev/null +++ b/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2077--fadc9b219cfdb3824803a8defc6c40e0d7ba764f77d61f81389fad73134db006.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_seg-manual.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_seg-manual.json deleted file mode 100644 index 1e3b382cce..0000000000 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:45:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3bfd84c54b --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--6c5ecda985564633a6a86394e635722c96806d75fa075367ee7c0e37f2c12b1a.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_seg-manual.nii.gz deleted file mode 100644 index b7e60c2c3f..0000000000 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14901--86cf9cb539d6c605b4ba60f225d3ec2389f2073239cf221771ddee5af8817449.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b46a79921 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--4b28c04369814ec05570136cab4a6f9ac1178eb694c57a1f54cb7426021035d0.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 20ed31eb34..0000000000 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7369--3ab6b06255affc350f50698271bb16febaf719cf50b0ba01244b73c07027f02a.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..22c6deecb2 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7327--7c9625883bbfdabde5b5ec63853be6bef25dc34c964cd36808be67004faae0bb.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..302b560ce7 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50631--7ffaf5b6546826f30d666f155cd491d00e392c3b6d03b757b144815db3c5b4fc.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 4adf2c4c3d..0000000000 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:45:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1954da09c6..0000000000 --- a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3365--a21a900f192822c589598687a32d03d71b760755542d1b952bfe070a238a8ea6.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..672a8e748e --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:45:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..208c0a84fb --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13764--e23f41160be882fc48930493ea2575bd7947c56ca03dd104b10eacec4e846153.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f01c8df94b --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:45:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..509077706e --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14922--0e6fa9e8b7b18ddf66d6351480b24053061e069f918b9eea3f6e62f32d5653bd.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e4042077bf --- /dev/null +++ b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..05b60150dd --- /dev/null +++ b/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--6c45292393072572cbfaf6cc90e115d81fcf96da2bbd4743f487b2a0f11ed6c8.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_seg-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_seg-manual.json deleted file mode 100644 index 6b4da4d3ec..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:39:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1cf79df10c --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105372--70f7411bdb88eeec234a216d7a6586bd571b333d0fabb96380d4ffcdb446e1b3.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.nii.gz deleted file mode 100644 index ddb9d90eac..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14896--cef36c0cba18da73e371346efa9deb9ba32df75de265ee9f1c4d0d07129ac30e.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_seg-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_seg-manual.json deleted file mode 100644 index 75848da274..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:42:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..312e8146ab --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--edbb259edc0dc9d4a6e222eec31981d56e398ceedf3c215ff850a98150276935.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 45fc699151..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7403--912c64a50d9f6e4e4c610f69bc8c929b8398d668e959314634190fbd1ae78591.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e788348bfb --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7367--909b1c9a08ecd1052b081bc4a12e6545500b3df36f513191dfc199b129c94880.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a4cfb9daa4 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--5bba960a0c98ccbc75e46b24bb691875ee6e7d4339db1ad5af572a0e8f058cf9.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index cbe023503f..0000000000 --- a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7216--5e5fb5048589e72a9d1cf0c7e6c71fc5234672de5d4d234379e54ae65a9a7d85.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a5a06b79f4 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7182--154115ab617748f1eccaea646654279db3492d42dcd465799575e688b278d74b.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..bdf44f7388 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:39:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b5ca6af9c3 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14917--1775855e0067415450dca1f5943658ab2d64894f8e9f0eb994df7b5afab2b225.nii.gz diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c36478ea54 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 15:42:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff04/anat/sub-cardiff04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0f1e9f037e --- /dev/null +++ b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--1b99351800b8811e2d4ebe4427987d47c75ea3a784f59c19d3ff3070f5314ca3.nii.gz diff --git a/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_seg-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_seg-manual.json deleted file mode 100644 index 235ed12a3c..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:13:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bc2589437d --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--d798019e6c888cdf5e60207eca78fe404c91230f1a4e490bd3edca28d8706950.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.nii.gz deleted file mode 100644 index 228239be95..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14774--9ad5e07b7c7ebd1c1ca3fb257e1f7895d9bc30ec45738d124c30fe998ca7bb9f.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_seg-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_seg-manual.json deleted file mode 100644 index ca8b0c661e..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 13:04:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..042224728b --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--c4af4b6d41122f4567dd8e1042c62b8195521141aefec4eec40b20165baf5743.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 252b9a6028..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7331--d1b0580e02624f446ffcab8b366f6b28c947ce945ece5a4283e2a6afaaec3448.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..410d674c9d --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7322--4325d94ac2bec6cfc4075965573dbd828adf0056aa684b161cb9c2cde3e5b50f.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..19fd90d53d --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50598--275b26b602cb1970169c571bf586e1f4728bf2bdcb924163c5d3ef5931b6ea19.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7fb7eddc30..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:44:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 82e533cf12..0000000000 --- a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3351--31744f211d78d7c173741a5d98989794e36c414b2a639648002c296a1e68afd8.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..53f773fca2 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:44:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c3fe90271 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13771--cbdc39dd5060aaf9b1116875c29501936162dd679edfce1413169ef40a9e0294.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8c4a5618b2 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:13:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..73ad5f865d --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14795--1db9086872e926866db330639fc067cc8f70a00b7d3938ad10721c34ee5214ac.nii.gz diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..eaf12407a8 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 13:04:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/anat/sub-cardiff05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_seg-manual.json b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2star_seg-manual.json rename to derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3f7231fd55 --- /dev/null +++ b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--d59856a7f83ccc0d17743da6f34b9f340e77207522ecc905f4346ab1fc432ec9.nii.gz diff --git a/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_labels-disc-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_seg-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_seg-manual.json deleted file mode 100644 index dd45184efa..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:20:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..236b86658d --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105336--24ae269c242d315746e390cb3c48c28c5aca0d96c01c8d4a565fbae9d7823e02.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.nii.gz deleted file mode 100644 index 388639db6a..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14810--01f368c92a52bc7ac0e21e8a08ebbb19ae1c97aaf539bb530254a37373b473f7.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_labels-disc-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_seg-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_seg-manual.json deleted file mode 100644 index 2cfba21e31..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 11:46:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c34ad7f3a --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50578--9e810d26314bf08184018afec8ea8b25bae5f7c06abc689f6d10de28f2087b34.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 564ae956cc..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7313--c59c512c6a089350a367c43acdcce4d0892f89764c422fc0b74448febb1d5081.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f6b5a4d286 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7281--0ad91b58ebea5a7cad15b081f7856f4612b1b366a677c90c3ff849ba0eb85082.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..56dd3373d7 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--ca733c02ee68d35bfd24621c60286f5e1668963399e6ba99eee296856f4616bc.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 68b5ebd6c8..0000000000 --- a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7144--478961b0c240177915ad888839ed810c0634d87d631a23065e61fcc7bfae794d.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b541e4ea33 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7110--23efc6d60392e3e5a5c160f072392fb909a7c7436361a794a984cbf519e1a474.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..36fa4a352c --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:20:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9e8330e2ec --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14831--7b0d5f9ca5d7060cf32d87a24b3de8527ff5a75a4a781d520c3d22e8c2a57999.nii.gz diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ad261089b6 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 11:46:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff06/anat/sub-cardiff06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_seg-manual.json b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_T2w_seg-manual.json rename to derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5a85add17e --- /dev/null +++ b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2061--bd54a7c6f988fcfefbe0d8f9a5a136d8f5c62e24af24f71d5feabde2476667b6.nii.gz diff --git a/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_seg-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_seg-manual.json deleted file mode 100644 index 52533f5e0e..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:55:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b8a2b37d6a --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--b5132bd2cdfbd6e9a93bd7cc281d6567042ba84540dc7513918abe04dbeea13c.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.nii.gz deleted file mode 100644 index 80e9f98e97..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14936--0f8445b4da39c497a51212b973ef867cfefec10bef8d40bc9efdf1ea00cb198d.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_seg-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_seg-manual.json deleted file mode 100644 index cf411bdbdd..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:00:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e8a22d1253 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--3bde92d126ff073d1bba768f97f1b9e680bf74bb40941555bda07d41f7d6da5e.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 03b459c61e..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7343--04889ecac88ce583aaaf5dd45aa3795e2d0c080b8531b1762c9f0c654dabc369.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff43e83eb9 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--d3f2483f6fc237de7335808ae1cbc01f5223aa10834d9d9e8770e558db602429.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5555107735 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50600--a349860dc08f6df17223043f4bfc4bb038eb59a46660e03282ee6b7c5413335f.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 3d9b8e80b1..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:47:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 21252ef5ba..0000000000 --- a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3369--14935e107e5b45d04224272c6479bad864640ffb79d6c34623ad2a3247c74414.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b1897fdda2 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:47:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e189d8d49a --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13846--e8b3e6e925b0320653995f852913c65590d100c81f4af49ea9ad351810506959.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1a00db38fd --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:55:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1443cd79f8 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14957--236f3dbcb75539a790c48591be1d88dca55ae5480db46d1410643ffe6291d3eb.nii.gz diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..2622b05fb1 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 16:00:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra01/anat/sub-cmrra01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f00e5cc5e9 --- /dev/null +++ b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2097--b713176d6279312af6c702b56ad95c1d7830253f2da454270457f34119b17b4e.nii.gz diff --git a/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_seg-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_seg-manual.json deleted file mode 100644 index f62cd82939..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:52:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4f380819f0 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105364--2bfe2c66c2ad218cde485b0b9adff3c5bb92df07c87f9f0d167e0b4b51f9b0fb.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.nii.gz deleted file mode 100644 index 45b39fd8f5..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14825--52f05d83b588fff01c729cb2ecc3c26a943541e86914d42fb3d079d502c23681.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_seg-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_seg-manual.json deleted file mode 100644 index 3cd1cddbaf..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:46:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..df1c0599fc --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--736ec821255beae34032dd06c649a278983b821f4b40edd09a221bf8eb131754.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9f0515223f..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:46:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 70f91bbed0..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3514--8f55759b7a3998b1c5f56d32d24acc11a0b0ddb56ac8eb1385e3f4aad3a29515.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4bd74e22cc --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:46:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd7b29187d --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14017--fa839478c67b248064f9a0cdb4897d7138c1562b6472ecc40d2d3d6a7a6640fb.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..844ec945e8 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--3f516f8e094b69ef46abb3a192af54aee903cb36a6f2d0aabb2e262d0d9f1f18.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 130b873422..0000000000 --- a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7248--cbf0fec3bd3a13daaff35d48d12ec93d4b621e688bc2bda527ffe5d9c8a220be.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f72f9f65f2 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7366c03f54 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7188--7b15699568b21c30e818bc5577ce62934190fa5351526c484306f47f987ede57.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..edcc4eb2b4 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:52:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ac63a88353 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:05:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f2a11850b --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14846--896c4dc0d70140e63d91ee495ca351e5f624d04693afc59e2ab30e87ba3e128f.nii.gz diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..2911262b25 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 15:46:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra02/anat/sub-cmrra02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c67d32e50f --- /dev/null +++ b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--b60b96411e1dee28743d86f8ac399bda22a23028c0b409e92c55fb9ae9714281.nii.gz diff --git a/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8d7e8675e7..0000000000 --- a/derivatives/labels/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:05:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_seg-manual.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_seg-manual.json deleted file mode 100644 index 96fd9754ef..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:31:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..094d529adf --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105374--4ab97bb9c3499387dc3adf46e36421daaab701cc591d165776ec12c045edbe29.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_seg-manual.nii.gz deleted file mode 100644 index 425948e6e9..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14915--27addeace5a34b7f4fcb3466825d4fbe292b6027c8fad3a51337daba120a52a7.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_seg-manual.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_seg-manual.json deleted file mode 100644 index 2de2cf201b..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:35:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6682e4b889 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--25f2444c067fe3d74f55f8bb63a10d7def445336e40fe7ba81079afdedc4a64e.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f213591cd7..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 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b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7296--0ecde2da6152ca7f80a9524a328976b7160c58f572452301f43a55fae740c159.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d689dffb4 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--01a5a9e9e998aa1912fda407e5549be5a1d26c769e1a3b7302a64b1b855ea15c.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e36144d706..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:42:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c2c0e90613..0000000000 --- a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3353--0760d7fd7de540b94a27eede4491f6aa3870bc9b25876cb4a11d24f81c94d956.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5dea14ed4a --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:42:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..918f37e1e8 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13737--634761dc3de476567ca1104a6600d6d7c6bbecd8e453980a430f632459e88b0e.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e616e20eeb --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:31:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e4f79efc25 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14936--de362a2a8053acb0e344eaa4c413574ffbdc42895425bf3cfd0378d1a3aa4525.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..419d5a81cf --- /dev/null +++ b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 15:35:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_seg-manual.json b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_T2star_seg-manual.json rename to derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..11357f1669 --- /dev/null +++ b/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2097--2a139b5725ac88e2fee7c58dbc1f88bbaa5737b3544403420f1ad877831f2010.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_seg-manual.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_seg-manual.json deleted file mode 100644 index a6fce84d79..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 09:53:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..71ce9ec932 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--576cb04137bfe4efcd5243fcaedfa8cbfa2653ddf0621d7ece7bb87ed207b582.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_seg-manual.nii.gz deleted file mode 100644 index 492f1e5d9d..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15044--e821e8ac320ee401e98c71689b98a9c88fe91716ada0c770154a21110b6d7bad.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_seg-manual.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_seg-manual.json deleted file mode 100644 index 9552c3bb7e..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 10:10:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4d27cf4635 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--038a5800a9ef7932bde48a620989d6f3131454af4ca97bc69412e92fe37130e6.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index da7a202ae1..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:51:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e6766ce706..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3432--ef391bb8a088161caabfa4e4313aa4d38c62eede4fba572c01c3c520edfefcf1.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..00504c51c8 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:51:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bd4875330f --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13915--7b93e70137d0c794750e3c5de3da1e8957ef8d3af0bb79e389818b4ffedbc62f.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ea0c23d8c5 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50629--31be4774e9499941f3bc75a0ff5682a30ab4a5e3aa03bb628341dc1ba7477822.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f659bce129..0000000000 --- a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7263--c15174586311be432ab2249524f32dfebd858d46dbe1207eed0203178ef58b3c.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc84b2aae2 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7224--e5d530d821b7998433b46ae27f7ebcb54694c2532dde2c6ab48204f3c7d63265.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..546268434e --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 09:53:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a7db6b36f2 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15065--a62b01340043bb0fad5f39ffc9c99e9bea9e93744710f3bbccc33ae1430242b3.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a0d2e00bcc --- /dev/null +++ b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 10:10:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2e13b83450 --- /dev/null +++ b/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--9708ee72b533baa89621535d3266ad841f2da764087bc9efe094ce680881332b.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_seg-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_seg-manual.json deleted file mode 100644 index f206a689ff..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5a25d1b742 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--1ab80272bfff04bb413149f21f4ef029872937cdc9264352a4f9c2759051690e.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_seg-manual.nii.gz deleted file mode 100644 index 502bbbfeda..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14679--0ffcada6e127b1d91d27796798e80688d8c4c8d298dbef896f9fc3208839501e.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_seg-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_seg-manual.json deleted file mode 100644 index 6b352d56f7..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 15:50:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..abe6f0fa33 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--c3b00bace8b94ef09f57b11e81d40b74df5aeed7eccf5e861912b4d24ecfb536.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1194a82c2a..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:48:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 1f86a1ecd6..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3411--bc2ab987f720612a63f9982acf4815fbed42cc1a386166d303063e23191867d0.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c23a56cfd2 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:48:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ea7b41a13 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13743--fceed14a55c0ba26d7836064a5a00ca1f08b101d50e1138106e5ea219e42e1b4.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b67cddc79b --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--cfe96abc0afc6b4cf32e41202323947c47b1db9f0d4133134fa6b784d17078ed.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 84273acaed..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:51:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 03b87fcf26..0000000000 --- a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3309--0fb341fec9b456eb8ae8f81aebae9dd94835804610d560a380857d90760fea1a.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9b411a0ce5 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:51:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45e5b3ab50 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13612--229bf521f4f7eb4636b3c0864dcd7686949d7406be05e4a84a096176c791c070.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f36094bc23 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 15:06:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6bc7d1b713 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14700--5c2c71fa17e21bbdf89f5bfc99b49c615c0a643f139e619e795be29875b693ef.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..039b7b2e23 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 15:50:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b8b95848f3 --- /dev/null +++ b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--6416060b0c7880e358e24afa552abcbf075486fb82ee2ec51b8ffe0f86a25078.nii.gz diff --git a/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_seg-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_seg-manual.json deleted file mode 100644 index b3e2b03461..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 15:01:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3699342a1b --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105361--b816ab890781db8ddfbc1511a16c357f8fcabb65b2364cc700cfe2dd08759e55.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.nii.gz deleted file mode 100644 index 2b23e19a60..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14917--22574f1c60235debc098ff706d7abfaf5f29b5acb635f0523aebcbc9249e508b.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_seg-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b18c08e533 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--47d21afac1f94125429b43037ad287113123cd6f8c2c0e0cbac67782047ee1fa.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 059a1e3dcc..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7354--38d18adc62c4cc906ce075e5f409e21fbca616c4e32896c1fe4554f7aa177fe6.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3aea47b8ee --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7336--216ba1437d8d6962420784af550bd517d0035a9fb9c9f32a27d2164cd1208395.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..202fe64133 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--dcef110382e7e7f9371ef08f46e369ad6aff34deca6f28ef2092f539322969ce.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 972a8da796..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:47:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 10bf00c6cb..0000000000 --- a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3362--b688cf3b8042bcf5e1dd0a6246d60736ea1d91dde9f3588478a0c3c53ba8254d.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3722ce0898 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:47:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f21790775 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13804--5aef8588e73455c4d47eaf29b8223b8693bb6eaeab9e0ea9c13ca6a559c1b2b2.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c0dc162aa7 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 15:01:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..32f8478329 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14938--fa5973634aa39c373434f8952a2411472b834dd27e31b45b7ceec5f422db5112.nii.gz diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..af57be1388 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra06/anat/sub-cmrra06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_seg-manual.json b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_T2star_seg-manual.json rename to derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9a5f9dd94c --- /dev/null +++ b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--363a0047c5e9d953f7c7ff5f7151a2f60216c339a8e3fb12a1f6e357bfedab25.nii.gz diff --git a/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_seg-manual.json deleted file mode 100644 index 4b5fabb11c..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 09:58:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8cb39f1aff --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105357--f5f3b046c9f98b69bc67e19b2a0f3346df283871de6c346c97e90324098a41fa.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.json deleted file mode 100644 index 090bb0ce91..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:58:50" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.nii.gz deleted file mode 100644 index 1d45678c10..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6783--e0745770e5c8dbb78afff47a85c2a49b62bdef21129be0ae9a75875023ffeb04.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_seg-manual.json deleted file mode 100644 index 92e0c44a44..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:03:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8cdcb98b17 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--4a2743c503909fa0b229bc034d4e28e53d3cc9084d085ddcb46215323ff9c740.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 864d0c0d44..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7350--2bfa6ca4b1671cee2e229b9d0cd98461339b1a875f9c6e87cd7980bf4c90d168.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ab13eb230 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7301--8b00ecf92d15fbb96e3014803f55a815b62027b2afa9240cf35ef0f6f30e4d90.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c0295de7d --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--1c156e4e184ce56f24e10cfff006857a907593888e4852d360606d4329f68054.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d92bfa525e..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:50:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 97c917043a..0000000000 --- a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3330--8b0b742f975d6055b0b3d5aa2651b1ef09b4041c9cc620e541c35b82050cf910.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c4c0f102e1 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:50:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..311ff29bd5 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13774--3bbea25a10e6a907c4db7c990d63e53152adffad58de74795776e27d14834f39.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1ae7b8fa79 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 09:58:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..986ff55ab5 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:58:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0e4056a0b --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28352--e29df4574e76d654988519657e4e09d69140f60b423e8a7f0fc1f96530ab4740.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..db09bd5838 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 16:03:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1361faa88d --- /dev/null +++ b/derivatives/labels/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--d1bac5a3686ba89ab1dfbab4bcf9c1b3766b52cf6d52a60aa871839a3b96623b.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_seg-manual.json deleted file mode 100644 index d89ee119eb..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 10:11:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dd49fd0655 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105347--db62e2576a75cff2641ca0d240605d448034dab7b530afd006189f69f9865320.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.nii.gz deleted file mode 100644 index c9c2b60fd4..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14895--f479498aa356fc9ba964f714669e9de5f19c030effbf08ab9c19f0bc2dc4e2c5.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_seg-manual.json deleted file mode 100644 index ca16fd0e68..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 12:38:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e707ec9928 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--1325a2d03d97cd281997b0f4de6ee1f5e8ef5529ec8aca68b631987751103e0f.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 85313004f8..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7365--f5886a635140088476054373ac998387fd385e50bcb65316fd74a080a41a5567.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..13f2687140 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7358--cd1ce3766edaebd48ad52d0e91ce6f3f1016f50a0e12a0b2404cb2cae6fe5f52.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..398f9d60b5 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--e54949faae4f7c137e1605b0d900d6cf2bd039056db0a33c41e19290a2081487.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index b43014d2d6..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:33:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9510897cf4..0000000000 --- a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3351--a3e559d0f0b90423b0d647fc396129b6027e3f89c499c6ed8f5f3d541e59636d.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c2f6558dae --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:33:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f26b2a8a4c --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13761--3b98f1e1420862b21737a50cab179771a435f885abb454e9e42a43a9d3a20d49.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..66fc624a33 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 10:11:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4d161b22d0 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14922--dc3211da88c87249455bd21946530660a4c00ab62dfd1df94dac35b537dd2917.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9a5de18bea --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 12:38:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1e5dd6eb0a --- /dev/null +++ b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2079--c5b2050888ab15cf769324826438fae8c7ced998ff4d43fd8d48baa3bf08db37.nii.gz diff --git a/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_seg-manual.json deleted file mode 100644 index 4bcfbfd3fc..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-21 14:58:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e94a20e1c9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--67306e33c70880f8e392900235be903a343efe664250f608878721abc0684bb0.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.nii.gz deleted file mode 100644 index ce70d4bea9..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14948--85384ba7cb84873180146149d91f064d028abd26aab992fb6675bb40f4434dc3.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-CSF_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_seg-manual.json deleted file mode 100644 index eec83b049f..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-23 16:09:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..67bf17d25e --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--d156a8768a06d159facd72b6c2af7a44f54f06c059a6a7e479b0d1cd694065f5.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a103823a5b..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7261--9ba8abb225cab6fadce747775df322c5abc921aae9cf8c6bf9451311db4c5495.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5762082ad9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7290--7e105e0d93868db1fb4cb3ee0d8b248f1678221e1be6fe4beda0a560ddbca39a.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e2ad750151 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--f03485d12dca7b60def6d5b26a7ad0b50f3ff0dd03df4d9d61d2d7c7e33f7355.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bf9e38230e..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:50:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 43878ea9ed..0000000000 --- a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3396--aba1802a98fb6144c7d3700b0b285da6f9a9b100620b51050061670e154b62b2.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5113a42475 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:50:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2bf4c5dbb3 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13810--9ecf3ba12dbe0e503e4c0f479ab8305abd650e4a3e9ac56dae9b3ce2fdf6e08b.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..89a6464594 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-21 14:58:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e2a2cec33 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14969--13cb0bfd9faddf500f246e05de94a0e9c14e3d86c55f00d07cd05aa3dbdd8807.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..29bb004550 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-23 16:09:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..20303a952d --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s138818--86caeedae0d5cb73866475f34984bf1cd54ab1639ea05498bd8ac3fc338e8a41.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..89f0114fa9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--3cb5bbff3981d307a362cdc8d05eadb09dd833455f986559e906578acc8684f4.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_seg-manual.json deleted file mode 100644 index 3393e4cc4e..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 15:58:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e65b948ae1 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105357--e39d140cd68d43848c20a357cb608c9a04234000ea63f96f04cfcd1914b8f04e.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.nii.gz deleted file mode 100644 index d24cdb187c..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14971--9c0dc2d3b8618130466b5a4c5ccb682f7be25495892c14851147681d9a347c97.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_seg-manual.json deleted file mode 100644 index 6a1589f1c0..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 11:13:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..28299e1c54 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--61952cc79cdc94084aa2764fdf62aed56e6e8785173db4439b76e7dbeb12359a.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index fe9fa45eb9..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7341--2e2afdc962c0fdc5550ddc7d00729a4c0d105e8e59619be730f9919bb8bcdf03.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ae34d6c74d --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7289--039f9de80a21349611da291b4907e818521d6f0333c65d5ec54e88af320caf6a.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fdd2d40009 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--52e390b6ddf3d385d44195b318016b6cf8279de6218ba5f7718541dc63667490.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 07e18f60d7..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 13:31:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fc22bb7c23..0000000000 --- a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3354--f632f8bbec4f590bd13d0f2b805f5085d9a057c3c381a0e5fccf598f5046381c.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..780da39206 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 13:31:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c3d626c1f0 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13769--a2189aca210ffeca8c1c78b680361ca91e132873846f9b51147948d3f42f467a.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a80cc9e72a --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 15:58:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e5ce70de77 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14992--8a52beb4c34245b79a38d4135fc9a65937e35f4c17f4d0eee8a20e6d7894e4a3.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8f0f7039de --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 11:13:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..834f17be43 --- /dev/null +++ b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--491cd464680ae75c26f6b7f31d99ae0d2975662df933ba71dab9f5f24e11028f.nii.gz diff --git a/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_seg-manual.json deleted file mode 100644 index 0729725509..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 16:38:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..84e4ee15b8 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105344--4645861395531981c36590cc84725455e6d6b95441ca35174f9be96799e60e5a.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.nii.gz deleted file mode 100644 index 9d5bf212bd..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14754--f37598e120d2f9ed4f02302dde1ef1b2188d1a9311b58bdf65839605b2e3352e.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ea533ec365 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50586--9b2f7489f12cc630f2ad1e4f085e501072cb75ba638fa4d474646add3d6be8dd.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index fc3776ccf3..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 14:51:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6f7825f3d9..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3461--ec26f64776d90e5ae7fca71339ea6932414b489abbe4fd74f7c316479d464bb0.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5555f5481c --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 14:51:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bbcb748496 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13928--8308072f484aa76fb2f74f487008f3e8cd75ae49cfb5af60140b95cda68e2fcf.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ca4680a0b5 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--8012aac704561aab1c6bedc7a9b0bc4dbbfa1b3db256eb6fa31e57505cd9ea01.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index bddf64dc57..0000000000 --- a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7124--6416aa5bc94146df2fc920291bb32c913ee3bd51482781bdf5fd029b0f5b8290.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..90e954201f --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..970176da96 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7082--4dfa7fb4c0d21aa8375a08b205e1d7e773accfedf14e2d0e0358d0b52597bd6c.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fc78ac2e79 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 16:38:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..a59bd06cd9 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f72d6e5ed --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14780--fd6f292ab2f0b46fcfd708163c95234017105f0e229db81598ce2faaeb79a6dd.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..af57be1388 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrra05/anat/sub-cmrra05_T2star_seg-manual.json rename to derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fea2aece6c --- /dev/null +++ b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2072--dcc1fc79891d8584d46f1177cce339084b595fd6dfa1269dde1bd7745ba5d54e.nii.gz diff --git a/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_seg-manual.json deleted file mode 100644 index bce58bab86..0000000000 --- a/derivatives/labels/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_seg-manual.json deleted file mode 100644 index b250abe12e..0000000000 --- a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:28:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..adafc5286f --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--96bae1f54a561cdb55438dc74ea263b378cd9e7b0ce29f5c649b997d0d9ea8fa.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.json deleted file mode 100644 index 6bbf39f50f..0000000000 --- a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 14:56:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.nii.gz deleted file mode 100644 index d650efcc95..0000000000 --- a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6868--bfa3ba8ce68363092ee178dc944e3b40b9710919a32bacaa0d9bd6c0a0f35b98.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_seg-manual.json deleted file mode 100644 index 168000dc56..0000000000 --- a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:09:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bfd2f16615 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s3520--845d2018d10b873fdda53b5e3fcacb346f1855417ca811f4b35061a76ec6e162.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ae33bc9208 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 10:00:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..de1d232679 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14103--59e07988d5775ec1c26356a1e6ada739beadd9756277c9f228cd5793613a339c.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..794198ab94 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--5d63d0e58f8be73120c1561bd07a02109da0780bf50929de72256b598067e1d8.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0e004434d2..0000000000 --- a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7281--37874bcdc06da4fe18496e8b81a8e9b8e523ab4b2dbcd1b8df6b1e385da487db.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..458598d5c1 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--1e4d7b9140e2c2aefa8a0d7dfbcc5dbecf6a0021a958e9bbec43ea8021eb5bfa.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..582a67e1a3 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:28:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..db62b3fa22 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 14:56:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4077d8c56b --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28512--f74add07049871cd26b1d7923845e29561ae3043d364852f075a89cca741ad90.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..48192a2514 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:09:06", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b095b4321b --- /dev/null +++ b/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2080--6b48a6f1e73d1c75a9ad62870198280bebfff96537603f4b45c6e85902a51956.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_seg-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_seg-manual.json deleted file mode 100644 index 34fe585fdb..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:49:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..65b86f6a6b --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--71049e9425dfe793fae147de53441fd6130f472d1696831065117c96cd6aa9a3.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.json deleted file mode 100644 index a220192cf8..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:07:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.nii.gz deleted file mode 100644 index e0bec8091b..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6805--9957110e9d17ddbb7c059ab4dcc9d377df04c8f6b0dafbccdeea5745374bf635.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_labels-disc-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_seg-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_seg-manual.json deleted file mode 100644 index 04c564ac3a..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:12:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b2f011a4e7 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50607--29b2cad9060108a775d4fb70b4f3e8a47c67533eb621a890e69ecab0dd3934d8.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 58073532cd..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7328--a8d6800204a60f6fe176a1d23b14597b21abdb22684bbf2482720d1acb323855.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72e8126b0d --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7292--411f056aa847f4ec58ce631abe89b35f85c2fc33d2c81da356a2301f1db5170c.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d6de7c8033 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50599--f0b8eab177610a58464e4f3ef61acb5de34d29471f305dfc2f94c1d5e5129c84.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 3d1139d274..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:23:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 407bc1d8ff..0000000000 --- a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3389--d2741dfc6f523d3ee05d244e7c362e5752cb5d187b1db8d0cc06dc46c010c3fa.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a62de7b2fa --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:23:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..730444dafe --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13843--15674708964beb0731c506d251e0dd9e068a321b02643d19fd9a18977b46f927.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7fbdc2807a --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:49:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..43632afeaf --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:07:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bf5d460b9b --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28380--b6bae4ce30a72c7ff04cdaa16768a93901f1c910a9a9759aa4764a0cda6c0fdf.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..db12e6c12a --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:12:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..146f40af14 --- /dev/null +++ b/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--c7e85f99d125c433ae2b2b2fdbe77159d2ce22cd22dfef24d8d7ffd4e9f36db8.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_labels-disc-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_seg-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_seg-manual.json deleted file mode 100644 index 5a1209ceb2..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:31:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..99989346bf --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105371--2d0b256154e12058ae5ad8892b2d9e8eccfd1fa59eabbb15cdd36b60362e8a43.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.json deleted file mode 100644 index 5a0e3bbf9e..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:20:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.nii.gz deleted file mode 100644 index e03ae0dd7f..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6792--194e96eb277094f0d6fe6f595b982d0e90cd96d87820e8c914b59e37b6b5a31e.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_labels-disc-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_seg-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_seg-manual.json deleted file mode 100644 index 038d12be5c..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:15:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f03abcf46c --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--11a4968a2cfd06742df90b2d0e7d01f44a8a96d21746a9a81f250173a586713c.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index aba140d80e..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7333--f24ffcb24a15a5263d3404dbb7b48d5cc91cfda70590e72cce02b8eedaa64ae7.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6c0ba33853 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7301--5cc86adeacf4fd02a80366321f668e843f9fac4ae0e121435c4278b032a23841.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5c6364b36e --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--7847a81b9fce162488ab50bc7a6f951fa928111cf517ed64154e35a7cc1f99f6.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d66137622e..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:25:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a1e34549c5..0000000000 --- a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3374--c2286abb2a87813d52b6d26dbb0c045293b8102b1278f0f9dfec4e1c8c39e74d.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f38777d8a --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:25:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..524120bc4b --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13821--498f37111a584ee9fbe6f8293a05985e1faf0bf91aa208f2ac42e721a57ecca3.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..4d13de70b7 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:31:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..713bca8af8 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:20:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e29d5e43f8 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28315--c3aeb1cfada5bc35b41e244126e6b6d15f6b396a03262c20b0c7a822b9df2e89.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..387451d4d5 --- /dev/null +++ b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:15:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5e43af8b09 --- /dev/null +++ b/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1994--f9048ed71be6e2c9d7021f13e012c343a5f190900fd715027932dc8c76a0263a.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_labels-disc-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_seg-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_seg-manual.json deleted file mode 100644 index 001ed8d81a..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:50:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..56667a6958 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--33c1cfd54463d15b32785db10c92211d5057f3ecea003bbe187fb8a902d71509.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.json deleted file mode 100644 index 853c832f14..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:28:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.nii.gz deleted file mode 100644 index 0ecd7fa09c..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6833--13bfb56e547e81d4ea86f015c11b925b6924f3a756147119c4afa63d5f67fc5c.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_labels-disc-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_seg-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_seg-manual.json deleted file mode 100644 index 1f7cce7b30..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:17:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..425ab87b78 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50582--f324f5b9a49a29446f0f9f458602991a0e3b1819aac405e243ae98218a8c4733.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index bdc8c5ffd7..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7305--7376915dd7046f9c7eaa722b5849d3d1d4bde7b8b084d3f36c54967f237db245.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6f74a03c77 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7328--49b873f78b272e897f7671739f813f5bde05a81f51f1341ed88c7c5942dcd381.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2f31cada1c --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50590--8a5ab7e64356ee8cbbbd89749fbaa1402ce403bfc2f9f18d51422572805ab57d.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ce313311b1..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 16:41:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6b47c0e68f..0000000000 --- a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3374--d8380cd2e29b851f5e0730037301f93818899cad7aef3bef754583ffa892c354.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5466a8f5e0 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 16:41:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81b4e0ddb9 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13843--070c4d92a0d438971b5293b5e7ed6578699befb9972e472b37b8de5bd209fecc.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..390469161a --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:50:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..77df5320a0 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:28:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df5a265407 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28557--4d7b812a1bf0408283f63d1249700aa467c88ffa6791f334acf8ff409b1ba6a8.nii.gz diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..01483952b7 --- /dev/null +++ b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:17:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden02/anat/sub-dresden02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7dba121efb --- /dev/null +++ b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2084--40987df4931a9afa1de7c372c21c08956e9825d2249ceb3185eb218ebb172886.nii.gz diff --git a/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_seg-manual.json deleted file mode 100644 index 72a85e2a37..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-25 15:53:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 1dcb5e4349..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14688--877cb02bb1c52c39012f61db4d558a0b430f70b1d98025f6c749d8264c95a629.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f1263d4689 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53888--7928559346bc803711afba6943512e529829387bcc86624821b30b09884872cb.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.nii.gz deleted file mode 100644 index f695df37e7..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8266--319cd437f9a22a5143d428d938415341c8a00d638e81cd8459aa413b498a1339.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_seg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_seg-manual.json deleted file mode 100644 index 1b85968352..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-26 15:21:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..034839b343 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--b7062690c989b99b594cd1025e0ece27b7d2f549b81c8d88b07914c634aa1b0f.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9bfe6ada83..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:24:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index dd3f52aea2..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3544--7835f27c7c888bae8b3b2325eb4f65e23ebb8183300fa1e84ccdf814c3320884.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3029266c02 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:24:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..760234edf6 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14273--0d9e47f94446d3acf37ef4167b3752f8c2bdf1450139843f9832be2f84133f41.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..532f7203ba --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--c146625dc8275f4b767f40fe2eef283644e67ce35760346e4d843234b3a2c1bc.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c8cdb689e8..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:43:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d636f0b990..0000000000 --- a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3342--d2403ef9d8bfecffc567b57c2531dab926dece18dacf5b8c6493acdb0c971fea.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3bf63cddf2 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:43:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b37064cf9 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13683--e1936497d80e6d190d1d277209eeee167eced45089fba7e54ad4780f5e414845.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5c33b51d03 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-25 15:53:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..9b23e58c0e --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..7c3e8b7207 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14729--25de051f457b962762e95b269ce6c1689687d7a0480021efe42de264c3004060.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7b12b39e9b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d051db56f4 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8287--3d649284f7abb6422c913ec7db74ffa8d6849433dac39d1f09fb04a7b5907022.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6c32e17271 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-26 15:21:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1d105c9b4d --- /dev/null +++ b/derivatives/labels/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2425--f15cdd93b8d3f551eec5303e432ab17946fcdf1e21967cb7cecd2f6d9bae02f8.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..20392bf245 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53891--3bf03375f8d4335d28c6028832d6906f457b5fc64213665730e2e8388437fa48.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.nii.gz deleted file mode 100644 index 2116ce3b99..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8263--6c2b26b912510abb818df030f197ad2e1665a7cbe835fd512ee417cc8d1bdc63.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_seg-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_seg-manual.json deleted file mode 100644 index 723a0de63d..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:39:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..13f832fc13 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--169f924cd2b7bb9f8fff14d2eeed475e273f2287cdc7da6fd078f665afc47c00.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 97c1db2b4b..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7418--3582d841a6b8bb050a20c7a70932d7921f62bd29da82634d5873b05bc87c005f.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6e7a1e4be5 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7382--324de38f561434f6feb87e169fd5608ee7a4b8e231ee68f3752dc0510df9c294.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c92514eb62 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--4a91550b844264edcc22630debaf71f5333cead6ed75a52e4e1300a76decca6c.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a33adf8c00..0000000000 --- a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7268--b5869e1ed88297de834f5b2420339ffb1fb954e593184dc7d492e6ee5d8c59bc.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..89008ac5ac --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7299--418b2779c10e677711cd92e3a60d181b714d9f2483526100596352fc1f2be262.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..18e0646657 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7b12b39e9b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..24efd7dcdc --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8284--99e2fb1f496e7e0a546d79590f4e07c45099dd1bbfb074da10ebaec476e7463f.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ad5840b025 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:39:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..927a03a7a7 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2428--2431f5cc82ca1de59259fc8b3934eae2311db9bd4ecdab364232ced46cb3ff22.nii.gz diff --git a/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_seg-manual.json deleted file mode 100644 index dc5a7f0ea1..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:07:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8e485890a2 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53880--1d93aee142e5e070683b0593d9b4654da0a31a333f882880387604ab503465e5.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.nii.gz deleted file mode 100644 index b206d06504..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8161--b9443ac8435c2cdc6c55a2db8228f0231945e58a22082b16239e157ce44c3d2f.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_seg-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ec37a8ffe3 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50602--ea4cfadb1671c1948007d965cd51b4bc1bc7b2505dbe1f8d2faddba0efb52e30.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2f95b2d1bb..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7351--cc9c33de1fb039370cc0bea908edb25ebd3f4ce8344dc70fa3b8f0880ac244ef.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25ccaa97c0 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7314--f68f2951b7a7164488076aba0b7dd6ac089bdbce67befc962a5699ca427374ae.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ca2723ea0 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--dd4b7fd2439bbd241ead3ac30924a638aed6fcdb746b1ae7c1cc42c563cb1660.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 76d57a5e38..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 16:50:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f4efcb8bba..0000000000 --- a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3318--76d69fe7127fe4c03cb6a74d5b54b162f44215fa36e0edcfbda233590105abef.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a6bb1504a6 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 16:50:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..41e026834c --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13636--948523a0c62eb26b94378e60172b9fb89750f837c5a241ef303ec6f56112f1b7.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2bb9d7801b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 15:07:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7b12b39e9b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4300500241 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8182--92e1f52d266bdf4574ae2d2a22c0e9fc0f504f2eb5acf5da394881f581d02d90.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..390b6cf9c4 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d3453cf084 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2433--bd4495d8ef2280a61f6f173d00a05582d86ab3b33e036f3f75a1ff4d211a4b42.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 38339244f6..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14122--d030b1f1159d22bc8076f1d228079b8d55d0fd61f5735dbfa1ee40792579070d.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..63e8b50fbc --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53884--85b784781b312307915a9c0b6edb14fa688678950d81e6a2523193da9d543149.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.json deleted file mode 100644 index 3f97d5d21c..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:11:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.nii.gz deleted file mode 100644 index ab45703abb..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3969--67a495ea06e314f5ac60c980b2c4c0639ddeef25e6f6b2859085b8672ea7a6fa.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_seg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_seg-manual.json deleted file mode 100644 index fbb91f5c3d..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:34:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2361ce7e60 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--6518e893968690b46339a59ff67dfbfa6516715e84e7330723ce55535c0664fb.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2baf8069b9..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7505--6a9188e7a14a6c20f40b1dab701e81f67aeca64623495d6dded6fe89f8595f3d.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a50f9b36b1 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7465--0484428e094afd018015bf79b41b02d72bb269db267f2164ccb8cff3077215ae.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8f9abc64ec --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--149b012c0bf148525b1cc28df32d10f5df51965c26900c9b3d8c7d24378df7d3.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 60b66ba258..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 16:59:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 439caf8f59..0000000000 --- a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3259--9beabed1e19de30addc9cdeb9a8c08389fa8c9775c0d8d4261ef8df56b0dfb42.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..457c148212 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 16:59:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c8354df73a --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13579--fb23d3fd020b21fa89bb9b1a13f789bb97ab1bd75db6814a0165f6b45f914f23.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..18e0646657 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..7a4bb6e0c6 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14143--8d6f87e0481a00da2e96a34a4799656f160a95aa9b4afea793ac5d13ec4dc388.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..15aca688b6 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 15:11:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..32b364d761 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15501--c9ca33b3b293001c3635541d3b5dfc7116659280dfaa98be23c581973b9127d6.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..14f85a964f --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:34:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7a0eca008c --- /dev/null +++ b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2425--ecbbd12d8b7a9ec730a6938d5bab572cb74d95ba95f1f8a9e3225741095027f7.nii.gz diff --git a/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_seg-manual.json deleted file mode 100644 index 18463a88d5..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:43:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f68d3abd8a --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53886--3b7085122fec83766cb04423b196ddcea948c00b360c90cf4a679012e159a919.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.nii.gz deleted file mode 100644 index ea84863ecf..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8229--1c3bbeb6f267a8ffeb07f55dfcf29ccb4dd5a22b9783fe187c99b110e64b02a6.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_seg-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ff9c6c3da1 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50634--5f3ab4fc51133430460e8a7869d8a8b9c5986736e1a13922d56bf3d581e18fa1.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f219214e7e..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 818506b34f..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7458--33cfc056bfa09d5d4002060ca6f1cc0def47e93c3398b85402358848a3dc6500.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b90e9135ab --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c2b7f45a8c --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7421--77daf432601925b30246a5b7a5652817bae66d85e704f218418f3296d3929f67.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5aee1c77d0 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50634--55adf2321482f45dbfda4c7a55f7b262ca8f41a02630970587f1aac7684309b3.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 48a42796df..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Julien Cohen-Adad", - "Date": "2020-09-03 15:34:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2ce6dd7c75..0000000000 --- a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7146--629c6fec0333c9a213f5a96aa0ab0081163d593219c3791521e260d2935b1692.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..87f78f678a --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Julien Cohen-Adad", + "Date": "2020-09-03 15:34:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c9ae9122a2 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7132--cbacee278a110fde77b1c16764f232af998efb51b0ebcbd95b53f3b10efff493.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..25ed4fdff5 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:43:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7b12b39e9b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2dace58b4c --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8250--d82298fcea668eb2aae0c8c855baa2d9b5f77c06ea691a41a809a58db062f5af.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..390b6cf9c4 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b2a8685a0 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2436--04a78ce834e59030372396ba14dddc75f57c640bd6920ac7c61ee31d61d3b80f.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_seg-manual.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_seg-manual.json deleted file mode 100644 index 50c19f50bb..0000000000 --- a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:24:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..78ff60e22b --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53885--d26eab42b764f6bf058c5a0b29cc45199a02617443031e69482b172bafd18d9b.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_seg-manual.nii.gz deleted file mode 100644 index b4056c13d2..0000000000 --- a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8405--2faa94d5953dca4d2f27e52144764d9ee2286f4ea3862497aec2f43fa0f3438c.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..97e5182e13 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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+1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8db5c8ef13 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7480--1730f3aa96c2ec118e3659f0409e4af37bd4028298f766096e8c948175ceef8b.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6c04ce9b3f --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--538bf0163aa106ada5ffcf39d60fb775ab41645d6e36b7a9221ba2b929242c53.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ea48fbbcf2..0000000000 --- a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:14:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c442d77438..0000000000 --- a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3265--51fb3b173e0504ba0371627c6fe8be6b909a1a2ffaa1dfdd966cd5b3ae52a995.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..779c0b751a --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:24:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b773ba312 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3a8086179c --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9996a4351e --- /dev/null +++ b/derivatives/labels/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2420--f75d5ef3633bc9fdd005cf62e62fe11f8de9fed7f6e73428c8b4166f21b3b6ef.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_seg-manual.json deleted file mode 100644 index a3eee20ce4..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:39:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f43d7d1d21 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105339--5ce69a9a32f413a33d72ab2b4d8c0faaaa1a2a18bc7bc791e2ec80073196fac8.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.nii.gz deleted file mode 100644 index 88afe40cc2..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14926--4d6f1c9164fded0181383a249a8f234da7a9970a2b383f38fa3e4004d936b3ef.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fe29c3bfc5 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50599--f12558cedf253365a08936204d8544634d5ae22048c615c78879fba79f56b7d6.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3642dc06d7..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7314--d064850f2549b0baa678cecdff5d11c3bde49a5e2a26acb3400d72548834cb8e.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..794699ed73 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7326--4ef2b715ee9400acb913f2f8ae7f5a29bb57ab864471ded7f512039a2f949e9b.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06f0cd76d6 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--71d8b355df498bb378c0198dcfd03bffd85ab0a9dc14b918eac3d2cfe279abed.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0bb47ec523..0000000000 --- a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7172--91ad76596a2dd5ce3a58ab343adce0297930004f16d8bb316de77d66227d07e0.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c89e7133a9 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7163--9af27f1c9f916225923cca939bae8ad6f21e2e654494e23b4be9afdf94fdbd2e.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..895c94705c --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:39:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b773ba312 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bde9eea6fc --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14947--a24ac4da515ab61e5ce09d49ca1ac10875484eb6c0ccb43c01aefdae4d7eb572.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8cd18ac4d1 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..db4e496901 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2076--c16fe2d83e84919c67220a72fdd17620c3e374924ea42c24281ad712e2d0e107.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_seg-manual.json deleted file mode 100644 index 7eaf75199d..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:34:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..85d8b2e73f --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--4f6ccc50cbbc451e2f03322a91264ee80315662f6baac6cb932c2ad684fe03fd.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.nii.gz deleted file mode 100644 index e89fde4208..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14925--04636ec15b17267e07dad85dd43daca1c5c14093c0b71a4a5c2949ee71bfeb91.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_seg-manual.json deleted file mode 100644 index 061ad2174d..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:47:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..726b5e36a5 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--383da03ad73e45a92939de1a0c392ff66745a4f4068ba2d03aa112be094beb2e.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 942034df4e..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7437--e2951a95564b9084c2d4f9a33e318c9c5b26e076e97874856da8f5ed2f9f914d.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d0ee9a3920 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7414--049b7243d5cfc0fa028fa0717695876f7c2a7fcf8614925c02697cb45618ad92.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..413c56319e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--4abedc7e56db7d6c67d44b1ec69b5ba6667e8bf075407e18502c5d2fc7928b8c.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6d9bb6aceb..0000000000 --- a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7247--3a4b66747faf379ed02c725e7bf35dda1a8158f75844a9d27afa8de413e2d851.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d0103fea3e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7216--98fc070e4a352edc87a4446b4b09b8ec823c9f6bbf60e830ce657e30c271ae09.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ff3e973fd4 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:34:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b773ba312 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8593133133 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14946--64f3300c716e4b5e28f19db5acbdaa11f9b22a377411598124ee61859982f5df.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..599f938105 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:47:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_seg-manual.json rename to derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..21c554f2d8 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--99cb077bfea5d2ac78cca35ef758f3568fb85cb3fe1e3c3ad97a030d51dc7f44.nii.gz diff --git a/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_seg-manual.json deleted file mode 100644 index 5362bc3c6f..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:59:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5e35e2ebf5 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--73829adf07c520bcc045c71e98795bbbe84ac641eededa6965d32fb9e8993f99.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.json deleted file mode 100644 index e30e99918f..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:31:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.nii.gz deleted file mode 100644 index c2e434cc59..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6890--e44afcc842031370287ae8102129d5b315bab46bb7c5647cfcc795b80a14e6b9.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_seg-manual.json deleted file mode 100644 index acf45009b6..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:50:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..992943be8e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--40669153acb639bb97aec941efa94ba969d2c518d2de4f9e1395f9639ede65c3.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d2285c70d7..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:03:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5ecc309158..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3524--08970e4b265bfdb964db48b32e4cbf9fd08881168d44cda84565d2ee5a418ed5.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1c7810a3a7 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:03:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..662f2ab05e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14051--27a33b5ee1d2e17bba436c758c2b44aac5560ffc420b8c82b4694fa03972482c.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dec305ebac --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--1b1e658151c163156db6e7d828b63870dd6105f52c0297a3333c1fdede732e38.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 413fa06f2c..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:31:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 70650653e2..0000000000 --- a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3378--d56a2637fd61a0f4e199f590b89f8f8e521a0cfe581c240098cd7de30291fa62.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..49b1c3b6e7 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:31:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7be443f0db --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13832--bdcea5b20a7c4f19b5b2ae20fdbe343be935935da48f03be93d5812d8bc9f02b.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c95c7aec9b --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:59:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ba7419328d --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:31:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cc48e0e99a --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28553--a21df2e42840986f72316aa4cdb8d6d7406772a3a30d121c14b4c79af9191897.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c05630db52 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:50:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_seg-manual.json rename to derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ae4524a263 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2100--b5655a128fa324e46b54c76c9b67c127ce8b3cd26f09b4170abe97bb70c51fe1.nii.gz diff --git a/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_seg-manual.json deleted file mode 100644 index aef40dbb7c..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 22:40:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c50d2f10e0 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105361--a017b2c9fa41be8702dd8d98845d8c028a0257694feedfb8b6d9a655c00fc854.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.nii.gz deleted file mode 100644 index e0b86f4919..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15054--352ea1333f154b5c9b57ff6ad8c51a786fdeec043558f5de560af30d713d5104.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fed7bc2900 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50602--6987b5d26be72280c760d9f41f9c26f6d46b3a2e3d160342e48d7a6246ddf56f.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 50e821a9f5..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:07:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 332e78fdf2..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3497--cc17a32e1d0fcff7677e811f27bd8ec7b69e8c7f2fef9d382eba7f9b11d110a0.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..00b243484a --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:07:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ab3f656a2a --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14138--d4ae9518226dccb3bce424da468f6758512bb59a0095661b939ea269a099492e.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5e560eb503 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--b828955c8873c58440bfa6c287974c187302517926438497940055dda173e8df.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f9692844c1..0000000000 --- a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7308--55ed5839c5f9278ffd533a1aac58169fd626905ee4f4b26babff5dd38a5bf243.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c2241c427e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7261--a2f7a1fb109961f512d784bb4d36672a8c9ae486f3c3f3d3bd9c196730b60ac1.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..661a851d27 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 22:40:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b773ba312 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..733afd7e8c --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15075--05a67103e4a8011e084df5b01aed7cff30165adaa1dd6c6c7598376e950563ef.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8cd18ac4d1 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..42fc43e1eb --- /dev/null +++ b/derivatives/labels/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--9ee9560283505c4f8b6ed45d9dd4b1d2176b8dd8ebc117d4308199ca6aa2f4f8.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_seg-manual.json deleted file mode 100644 index 9427db00af..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:55:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..045503a648 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--c6e72b7d69c024e65f80b650c3a9796e8d55bd97662060f39b615997abb9d9e5.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.nii.gz deleted file mode 100644 index c3d23ef745..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14772--37a29e57b10c7f7e0ac946a49ea88abf8ebcfb82a79fe0b88c1e0aa07e1f0332.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..55fa3e95bd --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50586--b31d0b0599b4f8bc2361e20349b1d0859981291ce65cceda33e38b62d0d241b1.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 942b4933e3..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 10:59:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5b637992fc..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3427--1e57ac0c8ed803d0dad6cdc7a6439b683eb79452e8e58b5798a23c9f976adc37.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..27321fd1b1 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 10:59:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..68008d3207 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13962--a9ece674dce3b3b36b24a350ced50ea0ed1ea8b8248166f570ba6758a83446b1.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..25274cddd2 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--2f3761bbeb71374abf527b898a619969b2ccae8f6fa7a03f1af14b891ae1a0b8.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 27441c750f..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:27:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 84f9fc107c..0000000000 --- a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3312--d988cfae9aacd473a6ce3cbdd54198c903fd1b8c02c372bdb4a15e3633da3435.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2c5abd3940 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:27:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..555a49db74 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13751--0776d423aac080efbaebb4a04090e4dbb788d88df8806d58b067f5a6cbfd03a8.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c4d5664c06 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:55:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b773ba312 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..61922021dd --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14793--7c515bf36a2a56736deca4adea286f9a25a8aa9796e7bd7fcc365559dda82ff2.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8cd18ac4d1 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ab4d7fa29 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2081--14a32c1ef8187416d49a3bd3294d6e70aa6ab843a85ec02c490711dcee962aa7.nii.gz diff --git a/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_seg-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_seg-manual.json deleted file mode 100644 index 73939f5fef..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 09:53:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5e25045889 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--d4ccf5ac318b5fa3ebcadb64f22f630f2c147b75ae808a8f3dcc71f06cd3f6df.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.json deleted file mode 100644 index 5f59bde98a..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:24:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.nii.gz deleted file mode 100644 index e3aeaf8803..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6815--c5cedb18d84cf0d5fd3c650bbc31a61671cacf90fe7fec847ad82ddf24689f93.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_labels-disc-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_seg-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7efeff0871 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--ff9b10309b04325d0d2c9f83a49a050c1c1c405c2e22c01acabf9591e2a49eb7.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a959ae8ad3..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 72c7aa2be7..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7363--4e484b3547ed1b3f1c19c295455cc1221132c2a0ed05b0cd5c0605a955fea81e.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5d09bac012 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d7f94cbc02 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7334--a84084551020dd3e737837074237a7917d1f3dd8b44760b067ea5901ef7dde21.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..137a488599 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--854ca550f9579ede3c990a8405033fa8cfe03d9621a2a3e5a9c027a4501d6ece.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9cf4c8e743..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:29:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 35c0fca94f..0000000000 --- a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3345--8ef183efc59ef517e9c9c372100814153ac3ab0850da83375d9cc129ae059598.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..226d330ad9 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:29:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36587518bb --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13804--8e33e7ef62fd4be9f79776742d179907a5850be4f07c835ad066968b096cdc45.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9a927e4ef6 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 09:53:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..c68f3ce17e --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:24:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..87f2307b1d --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28392--8b2a9cfeef31f4fdd78355da393ce7e74754b6fb6401aa41303bf988d13d3c26.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8cd18ac4d1 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3348035d41 --- /dev/null +++ b/derivatives/labels/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2099--ab87b2c139e157134295de8562851e12747cab62a0f0e003b9375cb08547fc4f.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_labels-disc-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_seg-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_seg-manual.json deleted file mode 100644 index 8cadea7b0d..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:02:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..91cce3f932 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105342--95c5421310db322579193c7e336191084d12555f19091c3c19857459d6a21715.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.json deleted file mode 100644 index c9f54243f9..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-16 09:32:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.nii.gz deleted file mode 100644 index ff8b2902e8..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6778--f11ee82816633ff8ea15f8a2dda9279efa2462c6a0757476ccfc7ab030180869.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_seg-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_seg-manual.json deleted file mode 100644 index 49568957d0..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:11:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5a3f98bab4 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50588--4cedd8d2b636e7953c96df25ef51853bd29647497c1973d6de34a7dfe543c8ba.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e6ba692215..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:25:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a539d19c56..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3421--a611f0d077acdfb3b78d6620444df4a16404dea121bde382bfb5409a417889b8.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e8c8dd4cef --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:25:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..93992091cb --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13898--22f73469a469233a31ce3c33adc182a291a57156fd7e02f372e994d6c70a95ed.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b098020df3 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50589--6fd99a8668cc3cc645d364a56c880d2fea4d0c094e61b1f153ad566335780846.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c704e8a86e..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:22:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d3a884244a..0000000000 --- a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3355--8f780858b140fff63c489a558969b1dd43e9c71ef795538b073730fa5987b178.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a54de1833a --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:22:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a00711d28e --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13720--ca9d5d317bd765e312b6b27cd24631f440475f3cedd3d6e80e80d1a42dfc61ce.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c78c636809 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:02:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..54b4330997 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-16 09:32:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ffc42bfad7 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28235--0a63f91aa0d506a8d32288a7865c563541f315d0a0a349b04d3be441515cc1fe.nii.gz diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..06b1abaee7 --- /dev/null +++ b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:11:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva01/anat/sub-geneva01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1bc22a6b4a --- /dev/null +++ b/derivatives/labels/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..51bedd3541 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--ccb7804a5d6a7d9597e64e796b0e71ace28b3edb19ef3e9e2cfcd59ebf3dfe2f.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.json deleted file mode 100644 index 135214da92..0000000000 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 12:14:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.nii.gz deleted file mode 100644 index e8e9de19ef..0000000000 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6843--02467e5cd6d8f35e90cae0d7ea67c2de5a532e889552b985c8dc0129ee68ede7.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_seg-manual.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_seg-manual.json deleted file mode 100644 index 3799d526ee..0000000000 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:16:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a9e6d5d8e9 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--e3ca5d34affd4f6166c687a1738f6db40ebf802599831527039b40a7783f97d6.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9f2a8f40b0..0000000000 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7334--596d23591d37db720dec99d51c2a00afa1cb9b2f4c3382b3fff736146dc30b15.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..91bfae9235 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7354--5299ddbe7f24e575dd5839a28ad8caa68f00b6c277d40c0e34b91f7116569510.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a58ee33f3f --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50599--b8f9e591e33ee5e21d24952e17c6b683169e72898fa32bfcb737510fc6da79b2.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 17f0f4aff1..0000000000 --- a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7201--a4a6093cf9228d88ce1cec71239135e59308b89fbb3ca695c7776cb62ae47b81.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..78e2962955 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7172--d8cba345290f43477c901eda565b7994fc30afcae9dc5fd9e347e54590e14899.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..103e79d889 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e61c2ffe97 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 12:14:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e543829d54 --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28513--b92f946d0ca3a4d41238f98f3c2b1de8a4adad94b5111179c4650a195dc9dab1.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f0ea0c741c --- /dev/null +++ b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 16:16:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_T1w_seg-manual.json b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_T1w_seg-manual.json rename to derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3284016149 --- /dev/null +++ b/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2073--964aef2c26a89f89ca629414d75019555db190a8ba93d82d739bf7e63bfed855.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_labels-disc-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_seg-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_seg-manual.json deleted file mode 100644 index 595359dc50..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:07:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e8da62b42f --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105354--6e6e6f7f807a62c50021be64c6c803d5345fa612980a0b8aa9af3843008d1da8.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.json deleted file mode 100644 index 72fbaf1963..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 12:11:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.nii.gz deleted file mode 100644 index c9aff1c995..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6898--7911117c488b8663b1a8f0c15e94dae75635aeccb3d2ff3c76293dd461cbc860.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_seg-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_seg-manual.json deleted file mode 100644 index 26f00c0286..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:57:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..73232bdef3 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--afd0d39bb1e4be43c29bdece542136417a8b673916834692c5297ae782b0bf94.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f1638cead7..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7365--ca1924e2a4fcbb4cf7b66ff48e0ae913d91badb5f15425562ff6847c077ac38d.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f6a3986ef5 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7374--acc3df54ef90b3a7bbabb3f503f85cd5b39c270cbd1cc9235d2c7c42b89b4edb.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3d7b1876a0 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50602--358bb5fd499dc5805c69c75d2e706af6f834656204f62801e844e0b32c2851d4.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 562d97d7b9..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:28:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f5ff2f72b2..0000000000 --- a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3357--b02a456e00949c65e739e09927b45736ed4771f279b6983043025af23308f7e9.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a917566286 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:28:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b85de15766 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13772--09293e26d86e6820b67e6cd2e6e00202ca32c655b000eb857e4eac021c1ef1c7.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5af07932c7 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:07:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..cf2f3ccb24 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 12:11:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b552133bc7 --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28555--47d1681505cbdeeaae72836227078f3caae9c20e9d33576db6aa6751eef21c32.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..cc377c925c --- /dev/null +++ b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:57:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e5bec5698d --- /dev/null +++ b/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2084--89f5de1a60bb1d106af03e62cebb51e5e6016cc9704d6d4cc8543564fa1efa78.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_labels-disc-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_seg-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_seg-manual.json deleted file mode 100644 index a06a12afe9..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 12:57:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f3cb940dc --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105359--8ba45949fc9718f75ea5f1d7439471196d938f63dde552d09c84cbd69dcc14e1.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_seg-manual.nii.gz deleted file mode 100644 index 5299ba06af..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14886--a646d00ee35dbc70bb4e07c1d0213f987d2000312dc6f8c294b2f1bd73ff3175.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-CSF_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_seg-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_seg-manual.json deleted file mode 100644 index c8295adebd..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:04:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ceb7b52a87 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--10621c829fe25b756f301f96c02215e105ff1f2bdac6063abc7cc159a0dab158.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d861a725d2..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:17:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3eb4d8b636..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3403--5e475b9d0cb7e73fff9e8a95eead594da7fec14839a2ec565359f74ecb5c091a.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ab57e55ec0 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:17:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dda55c9bce --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13850--433824bacc47dc054180857beb29006afaa709323c1316137a8238ca7cd81a3d.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2e45eab5ad --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50595--589b288df0f07682f68ee48da9fc40bac2e62ad54fdcee733b2005e4c240d411.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 87297efd23..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 10:57:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2b93c0c487..0000000000 --- a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3359--ef61d0d50e2258d97a4771e02b238702a46ca4bfb189d6e24ec4940b2ba60b03.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9c15c7b7d1 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 10:57:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..261891532a --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13708--3de108ef1350cd5143de39e06f5274bacb2b580988446f8b1f45b5d754270628.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..68df9c84e7 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 12:57:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..baef6a79d5 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3dbd3339b8 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14907--5ed4ad202b0cb882e390a366c120304dc8e75e051226123546af66402004a556.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b13cb9bd41 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:04:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..583a2d2466 --- /dev/null +++ b/derivatives/labels/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s140322--8b767c3e6fc4e0de5d2b60be6049134eeea4de748a7d48727ad2a4787681df1d.nii.gz diff --git a/derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0f9f0a988b --- /dev/null +++ b/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--403f701983de2b704b9da26359bddf2e4d87add7181ac273bec126bfed0f6751.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_labels-disc-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_seg-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_seg-manual.json deleted file mode 100644 index 93d5bc58d1..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:13:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8f0c953ebd --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105369--3253291ee818f7dc51e66dc16081f8b6a0f9ca39e5153511937d016f9603ebac.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.json deleted file mode 100644 index 3d68e07c90..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:07:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.nii.gz deleted file mode 100644 index 08db5a9184..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6849--43944c0eaaa13ac9de86e91387c471224b2ecabc08919bd4cb8bd1fc96fb5b30.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b11c0315a9 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--25f764d96c59b04cec01d756e99ae3fa523c74ff82db06fec7a307684f4d31c4.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 67a33bc0ea..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:27:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 91a2d715b2..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3458--b07a6ebb14c13abc773fa8d68d2cf62c0b3ad4e1c93808b32a40af8f11efaf18.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..17b1b90af9 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:27:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..192997fbd8 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13896--537f666e2a2b9dd0e291a81c75694f4f3d92352ac8259ac17dba57133204091f.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5c16e5c6ad --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--71f4e57d1b2f535737466fad1ed2a922b09a2344b4abd0cfc2d6b5926165276a.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9b5d77d99c..0000000000 --- a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7230--3cee790c316f0f8cedb4b9edba2ec26dca32d6c60e4dbaed96320c24f35e7e4f.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bfc017e7ca --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7179--02855b88b8554911fb3b888b7d65ac8116e3ec9d53e2d2ca4cf99a6420fa00ba.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7e7978cb19 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:13:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5b5c1f037e --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 15:07:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45e3dbd9e4 --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28459--e859b1a03fcee2e5f44f3ceb37da200a6796262495115c4fba4395ceb2f709f2.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..00856cf86b --- /dev/null +++ b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5b45e9e0c9 --- /dev/null +++ b/derivatives/labels/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_seg-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_seg-manual.json deleted file mode 100644 index 6d3cb1d101..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 14:44:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b8cb5624b --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105336--bb1416e3cc7eb94eab0f27396947b87fd73e1743fd9e970e704b2334ca938dba.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.json deleted file mode 100644 index 539fee423e..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-16 09:37:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.nii.gz deleted file mode 100644 index 74c9425a3b..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6870--fe3162694bf4631a90b4896dc48bc1abf0920d1b24684bafdf60c565b7cbca46.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_labels-disc-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_seg-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_seg-manual.json deleted file mode 100644 index 36748f4d15..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:38:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ac86719033 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--b2cf3ee2e6120613937560fae224c877dee904075504fd13993f67b6c484fe5e.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index faa8bcff93..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7282--a4a2595cc6ba6f6411f056752347b325b860e8497891c72a7a9076fffc4ee5a0.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..922609b067 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7284--c3ac9efd97d49ea0d18fc7aec21e9e3780428e16ca25381aac80fa39453841c0.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c34df2f739 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50588--09d03c80d5f4dc634eebeae37f5d3916be9af12a1a05745d6ce16f8f0afe318f.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 494c56d8c9..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:11:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fff2b12f55..0000000000 --- a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3322--235ef5e82ff4dfb6035d8fd59a786f99cac36bf4895d1dcd4658f9fa7aa2bced.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a67e08df10 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:11:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b0a8e5f8b4 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13739--4b9a7cbacbd7d4421851148b55ddb45967a97457691b18581348281337ce9d00.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..394eab1fbe --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 14:44:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva06/anat/sub-geneva06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7a8f54b184 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-16 09:37:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..147a122f05 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28491--9d6c8b2229e128d123c14f3e4935aa1f3bcb4a5993aecfa0cac34f8202ddacd1.nii.gz diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f50d5ab738 --- /dev/null +++ b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:38:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva06/anat/sub-geneva06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ce3d83befd --- /dev/null +++ b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2064--f5f6cd66f0a48b98214504c743c618ca78f426ea5b612ccdec0535504dec3c19.nii.gz diff --git a/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_seg-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_seg-manual.json deleted file mode 100644 index e094b65c9f..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 12:54:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9fea1999a6 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105350--85cb47c529da6c3a43be201085ac0bddc65ec3adb307eba0d6cbddf63b89428f.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.nii.gz deleted file mode 100644 index f1eaba2e23..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14842--8b3a16d45aaae926b14074427d6561e825d9b8f6225d405ac0c266de24b0a8c1.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_seg-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_seg-manual.json deleted file mode 100644 index 772edf2f85..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d02af52985 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50583--7094527936efb29dd6fcfe542bef9ef95fc7a7ebfad41c97356a38a2a32240de.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9a978521cf..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7300--becc0bef2f30d63a73c17b8dfad087234cf0c0a9a11ad242b1169ff5cdc084cd.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..943e2677f9 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2f35212c4 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7222--8983aee03aa1562732802915f7ffa8de143129e10a7ba6e208448a82bc891a3b.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bc52626acd --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50571--c8f046c1fd63f7c13081b0961f00f9fc49c44ca0d17f302f90f7fa8240366236.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a52ed4e54e..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:32:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f71e39e342..0000000000 --- a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3307--c926647aee954953899439a008618f562330ed7b6afa1a675ba1d232ff84b192.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4f64c48396 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:32:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8d71894bf5 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13652--021c8cf126f6dc93bed320e1b82e56a429d92e6dd04713fe6bfbd33641fc0804.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d8ee2dea85 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 12:54:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..baef6a79d5 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b06f582a6a --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14863--3844c6939a7132a3394ed0a8301196a3d6d67de222dafeb79d294102cb217bc4.nii.gz diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6df18edc88 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 16:06:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg01/anat/sub-hamburg01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0a9dcee31a --- /dev/null +++ b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2078--e9f34cf455ee85de196ddccf57176e885b1301bc7907652ac9be40982794f9da.nii.gz diff --git a/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_seg-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_seg-manual.json deleted file mode 100644 index b380625030..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:17:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..91234a6af2 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--cadc4fd3cde8348ebbfc1bbfb43b168f8b96e508f2a849c98278d365f9ed7eef.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.nii.gz deleted file mode 100644 index 40fd27625b..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14819--9f5b5761509c388d84e7aaa2db227e4598fea24543e7b83798e2661c7552f992.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_seg-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_seg-manual.json deleted file mode 100644 index 5012ebda80..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:09:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..13b85c316f --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--0f20169441efe881e98ad1a12dbf8fa62f9172516b6af4895b4afa0012f8587e.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index cd39642960..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:21:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5d10ed434a..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3456--720488bad66a4db786ce42be45752a6ceff7708a129c9bd0a64a26d59ce9a689.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8ec3893c60 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:21:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25f2a3adea --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13992--559a5129cf5cc4257a37d883454bbd6db4f439b44e3136d63cb9b55e030e2ab9.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8cb03f38cc --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--4d34594bd8a64f0417ab9fe5028bb4e9783b59803ae4b4b8b44827f28916e6a5.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 605ac3c790..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:36:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 7df7ae8ac1..0000000000 --- a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3342--9c3f1324a7070a61b8d136194fad7ddccb5caa91a8017a71c401fe1a04060e0c.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f029ac7691 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b84f10702 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13674--ce04543b9a8905eba1a3fb71a2ae3721b024ea01d42a778118c43fbdffb3e147.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..3db8c7f76b --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:17:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..baef6a79d5 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7250fa27e8 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14840--b87a9ad13758d1fb35886e1d38d01e7d77beaafc72f9b740006da6cddb1dc75f.nii.gz diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6d3fb6e202 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 16:09:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg02/anat/sub-hamburg02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_seg-manual.json b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva04/anat/sub-geneva04_T2star_seg-manual.json rename to derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..226e5097d7 --- /dev/null +++ b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--136b7c591178c5dd7315454820bfaafa7cb32a0e081ae7cd4b052815fdae3cea.nii.gz diff --git a/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_seg-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_seg-manual.json deleted file mode 100644 index 973275df7a..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 12:52:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a453dc1e57 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--7835e6e564c7d13e5106cc7da553e13b47fe0485fc8f1ccfa33fbe8d4d7ca217.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.nii.gz deleted file mode 100644 index 4dd27531ea..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14888--a270f3e935fe44b00aa8f402fc3caac072f8d5b965f25a0c9387505607406bd1.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_seg-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bc40e940a7 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--fb7b0429ef287903c8ca2b8ea9fe33bc508393cb555b495f6cf14ba91c40891d.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1ee544a828..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:09:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 1bcc668f9d..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3469--78a8893276a5200321d8e31ceb8f64975836735259b53de2675c1601fc2cd7d9.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c3c2352b30 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:09:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4fd79c3240 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13998--1e65f0cf3cba94d0219d5e223d81b93c5bb2ff4ac95a0cd3bfe94644c42a670e.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b53be61d78 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--8d3d033bd1e6f85fbd1a9091d9574a1eefd241594ec18a6c747432b84d7b3aca.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 359a4d364f..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:33:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8c657fb03e..0000000000 --- a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3370--014d57e411a6311b1335045754083c0e65646fdcda9a730e17899d581c263af3.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..23f92d5310 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:33:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..228848b556 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13812--8d779f31d232e73e450282cdf8c466e5c0bf9df7ec91d44c65355b93b7acf49d.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9edf8648cd --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 12:52:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..baef6a79d5 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8bf0d3d6f3 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14909--ae0ddfb50a7eaf651f337a2a5b0528cea0848c94bdeb1f5c595e83e22003bb7d.nii.gz diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..00856cf86b --- /dev/null +++ b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg03/anat/sub-hamburg03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bb76697c0d --- /dev/null +++ b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--98d7692cd78c3c2721907642d47d7cabb3e393c64e6f53eb4a68ddb746bce3de.nii.gz diff --git a/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_seg-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_seg-manual.json deleted file mode 100644 index 63e399beac..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:18:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f3e84a566 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--86da604e9118b2bf808be5cc45df3718671093961560bcef0c2356e0f4d9d711.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.nii.gz deleted file mode 100644 index 30ea1a3e22..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14896--0f27bb792a3a7d7ee6364619e4d60050354f7c6cd08e4f6423e5349e141e4477.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_seg-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e5b2cb41b4 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--14d47d2f68bebfd047c82e1e137bef56c3d7baf39320e9ebc27cb51f481be27b.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0bab823721..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:05:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 39304c1e05..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3413--98ed8ed5992d6668ffc758174d3144956df9d3b0d94c10ae07551406f6e47ba7.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..61d1c6e094 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:05:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5b2d001c3e --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13939--3c5e49ff390f8bc134ebe95a073acf0956959e26a9694bd7415a9b54c065f3cc.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ecd69d77d8 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--4bbacd180c31e040c3ed266608e1efa50d0912a87dce195567439c5019f1a1a4.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 3a36797e8e..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:30:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 35bdcd5ee6..0000000000 --- a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3338--8acc71dd81062e67a9388ffd57a56e0d92f680155a7a7dc85d949fd17692da6c.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..61337e7f6f --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:30:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..27408d462e --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13766--55390ffd7be53d87fdbc3e4bf71d7bc79f25252e20024b6e36354153dacfbace.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..062d2eed40 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:18:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..baef6a79d5 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5c7f68782 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14917--c475ced7a71684a15c2426730572211b17381fc92ff22cf27dfb1ca34856a56f.nii.gz diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..00856cf86b --- /dev/null +++ b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg04/anat/sub-hamburg04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_seg-manual.json b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-geneva05/anat/sub-geneva05_T2w_seg-manual.json rename to derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4a592f45a9 --- /dev/null +++ b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2085--67f5d4fcbf2a89486e199cfd8610050a2ce6ddb2651ec3e6b3b4dbb9ba675962.nii.gz diff --git a/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 943dd6d88d..0000000000 --- a/derivatives/labels/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_seg-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_seg-manual.json deleted file mode 100644 index 33c47203cd..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 12:49:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..48d261eab6 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105331--bb8360b142128e10c27683af476e645c7b52c33ea0f558b2445ba1059b766ba2.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_seg-manual.nii.gz deleted file mode 100644 index 491e3eaef8..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14926--0723873619bf3598eaa81ad30dfd20859ad840ea9713ae287f32fbca794771c1.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_seg-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_seg-manual.json deleted file mode 100644 index ca039e9bf5..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 16:01:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d8f5f151e4 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50598--b2161ab38dcf024e503da49d31faa579154a9f21037055ee9a04115f525c34ec.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0151abd555..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:15:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0657c4f850..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3456--ce6798ecdf5148d3d6413aea238dd5dbdc7b793aaef4f8da396f692871c12d49.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..13ec812b64 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:15:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0775ab8476 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13966--a060607bf2a1ad63dd38bf368e32bc040371056f591ea2bb6c94cd37831d39e0.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3e8d2220cb --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--b278df4d3c31811fac626c850ba518f0cac282fa0e56545cd83f241b9ea0ab6d.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7d0ff826fd..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 16:34:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d0ab6e9de4..0000000000 --- a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3388--dcc137d02e79c8e30743a7296e3eb247112035dfed506e2f72df0cd39490b027.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..26e64ac461 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 16:34:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c7c776348 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13778--f619635875932f5d666c0e076de6643881ef7ed435860448dea2a761f2d6db5e.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2e2eba0f20 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 12:49:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ffe01f8de --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14947--3fabbdc9e5209c0af7ca20b200b92836089e2ac83de530a957e29839c55518b4.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..70e4ea8421 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 16:01:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_seg-manual.json b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg05/anat/sub-hamburg05_T2star_seg-manual.json rename to derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..60cbf76bd7 --- /dev/null +++ b/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2066--4815dbe7e91f9b8ecec155d9f60ece05c749f697bf5a3acde93b71db5484291c.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_labels-disc-manual.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_seg-manual.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_seg-manual.json deleted file mode 100644 index d6fb80c66e..0000000000 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 13:22:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..98865a037a --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105337--bae6517c184330a47f65d50f0a9c740406bc9dd4ef6a4f2c138d2c07c94d3b52.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_seg-manual.nii.gz deleted file mode 100644 index 90a921d5f1..0000000000 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14810--243f839e71e873957b7651edbe427f5707880eca688f36e6b1075c64fff6aa49.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_labels-disc-manual.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_seg-manual.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_seg-manual.json deleted file mode 100644 index 0980f723a4..0000000000 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-12 12:17:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..594ab95e25 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--a7eeccb5dc3d689b8d86f3c7b35ef0dc45e59e19bc851e27fbf705d1cf98a152.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 64d3a21508..0000000000 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7368--fcdd0ba8af927fa07a69c2771ffcd87628908e4e65ffdf75c494a61f74d78be5.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e852d35b50 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7330--e1a0d0fd0a55542a1922b9614f579cc474e5c88a8c298e697be4a9972f816b8e.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..de65072a7f --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--301edf85f0fb47c872954659bfcd57fa66d06cf4bb5bee96c784c627c22aec90.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 77b76af3a9..0000000000 --- a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7166--cc4dbdf269dab865e5a3f4428af0f951fd8a5a9fd6d51b4a26fca6527852c61c.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bd80ed960b --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7167--42a9771b12fb0cf7064fd00c83d4cc9fea6419961e1f428835e2804da672e782.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1da7a3731b --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 13:22:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb08452f1a --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14831--6b80058661ef90ac53e7736f0001ff216ecdc176ab05165fd2b1129d60530aad.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1d52c292eb --- /dev/null +++ b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-12 12:17:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cb53733ba3 --- /dev/null +++ b/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2076--52e4ceefa292f2cc00d18bd8ed39a586a64c050c08816f2ff41f91cf138e9660.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_seg-manual.json deleted file mode 100644 index 5a4cf0a027..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-28 15:42:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6fd1694d30 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105370--2903256a4b30b849d7d9d8cdb3fe6a4c4bd891a41ce12482227715a140d1b5e3.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.nii.gz deleted file mode 100644 index 35126d9ea6..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14901--4fd2791d49005392490a3ff269370c57fcb5279eca4dff7915bfc100e1cade93.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_seg-manual.json deleted file mode 100644 index af1fe18a2c..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 11:35:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8d69676f9f --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36312--cba8889cc7c3d73262cac77b9cab1deed7d24c245c399bf28568622df85de1a1.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 1284616be2..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5824--5f7b5bb0946bc9a461a40e3ebe3a43385093dd830d7fd9249a84d9d38c4ac679.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee6f75d4c6 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5793--e4a469169009a4f4001b4710ab9609443a772763e5ca6b1e3e042ad178f2154d.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b4d4a997a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36327--faf1e43d1cb6cdcf7b7a1d42b0983fddcd9fe65c5e6ae454c64fc3770b4f1e2b.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a952ec7174..0000000000 --- a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5603--ed6964244112f5db5203c4bb664ae410e9d311c3aa7ec2c5024a3ae7c6abd13e.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e674fb91d --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5586--9ef6005647aee43e81bf3e77b2dd27020102f72eec50b22041841a1dbec845ea.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..aa7b6951c2 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-28 15:42:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30a304d90a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14922--6667e64aed8c95f37f2b2d4e49d34c7fb9f33ad25b0f7fa9d7f7454ad12cab4c.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c027dfb6ae --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 11:35:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_T2star_seg-manual.json rename to derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2808ecb00a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5106--9eb69fbf133e04d0fa11c0c086e8ef3047259e583aec2d9c80bee6c904feadd6.nii.gz diff --git a/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d783ebfe89 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105377--f985f473f37e72f351795b128fb26ce4ebc759e1d76cb1c8dccec175e7bc9f58.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.nii.gz deleted file mode 100644 index 600444edc1..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14824--4a5d24f04e655fff2a8bd7b50daee445af2dcd3c3971c93efeca4200a15e8664.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_seg-manual.json deleted file mode 100644 index 501ae6435e..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:35:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c8040d259e --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36317--e89a56d35cb3aa64f92dbabe2a8bdc8f178bee19bfd7381f4773fcc29ec70d78.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d720cc57a3..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:30:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 315407771e..0000000000 --- a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2832--c1e4efa420d2bc97da18b528398a951f279ffee70a92fe16c28724a35db4b06b.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8854c82532 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:30:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..78efddc812 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10761--0e81381ecf01748d6b519db24fcc049fec9797c710bcace4ab566e8f35248caa.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..49b9f8951e --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5543--b1799d8de3ebeaa1fabd205a56e4e0886f2e50fbe58776571139bccf26d87310.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7b7a85addd --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_seg.nii.gz 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a/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..566873c4c5 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5111--0dd249693095629d0cb7c527d279d33611541f915dd8fd11abb87bbb7f91a131.nii.gz diff --git a/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_seg-manual.json deleted file mode 100644 index 7753396c8e..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:09:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..037299602e --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--6e99eab0a927a7037035d9a8968a784aead3dc2b800c59a03dcf966e7faf3a7a.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.nii.gz deleted file mode 100644 index 81c393cbcc..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14939--dd61378b88ba98607e47aa012ba3be9667b4d192925bf7878e6d12a4c7786fd3.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_seg-manual.json deleted file mode 100644 index 72f4efa158..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:32:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1a2ba0cc20 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36324--04a0bacaf10fdd659c60557b9859f529342eb9712fd27e498508ce090cf53953.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d6ad85b2bc..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:25:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 61e10c7509..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10958--8b28fd2b62e8d8801b4e273f8e80e9f9ee97baef1dc7686051e23751ec76f7dd.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..92dfc9be3c --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36322--6ba3a3b0ea189f2d62434e044dddc905dd066be69d25f2d7b0ff1e73e9fbdc23.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 73f546041e..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:09:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f92006525f..0000000000 --- a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2762--416d8fec675aa0e1999300b95337f8fc0a542fc32507201b2600c7226ae75be8.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..25bff80658 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 17:09:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..968d272535 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10602--3db0406f073ec4801f516dc1a1f8d4d226fbe969ff7eaf4f15f20eb0c2072421.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..798dc6786a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:09:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a8e131515 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14960--a6ecf0392cf3d88e118ecafcc895d2a2b0dd7bac4ed07d2de84be03ef4cf1597.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6ea1d21508 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:32:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..eae0f8c521 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5119--fd89d9fd88a7203c6f6bbdc4bc0aa82ab99fbb53879d40a64e638ce48cbeacab.nii.gz diff --git a/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_seg-manual.json deleted file mode 100644 index 72fca4ce93..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 23:13:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..409f25ffdc --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105381--a91b4f78580dd755065b893bf570eabd153c5cec49c49b4cbfa95988dd387482.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.nii.gz deleted file mode 100644 index ede7910b1d..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14896--a057bf76bff96c68adac595e2a93678640c93b7448adc39c20dd76fdffbf48b0.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_seg-manual.json deleted file mode 100644 index 8425113fb5..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:52:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d0225d342 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36312--8013afae1eab6f11bbdddbcb9b1d4c7f522c3eda38c32976cb7698f6094ea95d.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a47558fd25..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:38:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 436bfdf2d7..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2882--aad02433e40289258a021c8a40eb4f30ebb27c461878ba55249f6608c3bea0b5.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..574a561f8d --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:38:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..15698a96f8 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10865--481c99efb0789be634743affa139bccf303939802a8241899c0e3caaa8e19c1d.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c667fdd57 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36320--965eeb39b58e5f5febc684daa31d4464614454e8c5115b6c03a54a79547f0bd2.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e632c27a01..0000000000 --- a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5590--14f961904286471ed2d815fe709bbb1fa44a666e99c30716c31e752642beb01d.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..68792409f5 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5557--1e1336e1444393f185ef3de98cae6ba0f529a97fa6022a1f85a9db6444a0c9b0.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d076348956 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 23:13:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4037dcf84 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14917--70127d90319baf85bcb3dd959c1d907ac5bb5661bb084b536e1dae2882df7ed4.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..dee447721a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:52:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ee241c416 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5114--1a23f1ca142148f00ce04ea614139c13cfbbaf69509074863642efd9359f44d5.nii.gz diff --git a/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_seg-manual.json deleted file mode 100644 index 113a58823d..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:46:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..91b89d9567 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105380--19cc32faeaaef3405c57b3ddfb23782c6cc1d485f38c4a496e92a5e93a96ae4c.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.nii.gz deleted file mode 100644 index 090a4128bf..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14687--ea541db1f2784580da7a104201d69eba42486fe89a3c686c968f63c06f427c43.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..84c01ad357 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64368--908c34e2814542f8e6f05d1b51e7b94a0e5f2b02c08f3137890dbe32988fcc10.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f2dcc0327a..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:55:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 67a5fd89fe..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4698--04dfd0a97c3a4a67f573e58c6749fa0adf7837778ad3a5dad9d88ccd045d8132.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b1b9dd2e3 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:55:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd8342a3c6 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18600--52fb938214ba31c01b259a5f941d47e3ded214928f5a640ca6b9c0caf5835077.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..632b1d3eda --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52015--8c14be7d45b84e6ad5609c40e96c8e5b71d827282360e739f5dda7e917437f16.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8dd8b335a6..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:17:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 4fee741baf..0000000000 --- a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3669--15b51d6a923bff6a34bd0313dbf07ba1662669b8d1c099714931f48db689fd0b.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..f5f8184acd --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 17:17:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ee42e862b --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14761--363c8a666010a8d55891ea1ea4a2aeb7b7bc4ca8a248fbba1e50237324ed1d28.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ed772c5e69 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 15:46:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f16cf73c39 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..de8048c24a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14708--9558814836cacd29a73945cba23dfb29379ed33c3194d94b6f113a9df2537743.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..658c73a512 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..db9344a445 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5112--abb28f487eeb2618af84bedb3cc4de8320cf8b2074554ccad2fcefff921ef903.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_seg-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_seg-manual.json deleted file mode 100644 index 8e23ad30be..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 23:10:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7eab5fd680 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105380--d28014e1de77d1a92dfc9bf4bac5f4f61fed8d6ac5396c780e712d2866d4b230.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_seg-manual.nii.gz deleted file mode 100644 index f66e0a1edc..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14961--d3e6c427b125b7d88383f15e01885b7a312e750c6a23d42e4c89ca9129c4e46c.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_labels-disc-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_seg-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_seg-manual.json deleted file mode 100644 index d951a2d802..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:42:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f0900a748c --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64363--3ea099fa7e699609913e085a7889004b7f1ba77efba6fef722b4423d681ea0d3.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 60a94731cb..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-16 09:37:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2a9bdcd9f3..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s4588--8f9d1f48a61fb0d468af1aa9b899b84bd6798b221732fee2d891595afe4b06bf.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b126a9fce --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-16 09:37:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b7a2f8b88a --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18363--a4ebb60685888b6161c31df2d19b1316fc0bc74f3cff555b6102b25f93d17cde.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fc34c33b27 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52014--a6e87d11360c29b11f05b700b26c2bbe5cc0ca71368da5213f2b4aef166d60e5.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 34798dbab3..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8302bd0ac1..0000000000 --- a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7869--21dbb47fabe0a1f36da157cbc3107dd9c30f5607c5bbba6b81a8974cf57b263e.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a930d89918 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8681533a38 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7716--3d395eb2acc492a9f4deb658c785f1a01b674b43bb05e4b2d02753d52b332d20.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..dab1bf3184 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 23:10:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..2ad2318716 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..38ae9d5b0d --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14982--2d0df9c62a1b7cbf4e14352253cfba7eaa8e4d6d1a93669ca898114bdaeb4932.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..42bf33fb9b --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:42:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_seg-manual.json b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_seg-manual.json rename to derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..78226f0725 --- /dev/null +++ b/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5114--adfa1a1ddf23e5a912b97963238833747a052087635465984149c1673b65a7d1.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_labels-disc-manual.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_seg-manual.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_seg-manual.json deleted file mode 100644 index fd5f27bb55..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:30:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..439c7470b4 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105338--2107c70dc7043e605ee4da83549f8eb63acfc48f26f95491925d7f761b16daad.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_seg-manual.nii.gz deleted file mode 100644 index 54d1806bce..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14921--dba677e5060f5e00f7a4544c8e7eb77fc496d5a20197cc25a7a276b577fba543.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_labels-disc-manual.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8e1c96d3d0 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--5c4cb1fc917b1dd458062b585443e0bbecf0ac3357c3a023873953ad62f4f61c.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4e07661794..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:11:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 54eb85eafb..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3434--796099100736ad0a4ff2ba9b08f7f53654babdc2e7d68fc503520a56d8ad17f3.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..896adc7ed8 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 17:11:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..458599ff25 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13978--68bd4ac06b0d8c1c18401034217454050638cedbe8c6a5b470f2f09ab65f48df.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d48fcc6d5 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50577--af57f3b86f10e9588a117f3debdf8d26ccd068c74d2fde1599e8728d6bce4295.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 970574983e..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:41:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index cbff041355..0000000000 --- a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3352--571f89338e0f2727e8d1907afe2dbf24b55742ab00ad8964b6c358ad9ceb2d8c.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9e52495f3c --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:41:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0f71a925dd --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13795--31163add7f2bf22ee1b29e92618ca467dd032d1467e05bb744f940fa4205c11e.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9e6eef4101 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 15:30:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..2ad2318716 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d48cf07fd6 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14942--6e92d9cc3af8a41473b9ad0ddb66cfcb8d10dd50373f48528ab5f397fd02f0d9.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..16ef5ab3e9 --- /dev/null +++ b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1588bdfed8 --- /dev/null +++ b/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2168--180d331ba9762ceb7db34634862c6c91032ea0342b60c372562de3b40bb85770.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_labels-disc-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_seg-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_seg-manual.json deleted file mode 100644 index f456b580ca..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 15:55:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..215a435c3f --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105350--6020f02404164638012c939d203faaf35c1d9c2242acf2e8da24e7302c259fc1.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.nii.gz deleted file mode 100644 index 3d5226cc7f..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14819--1016eae80a7a84a625d7d47838b3ea0206ed0de2c64532128724794dbd73e4c8.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_labels-disc-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_seg-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..23b96ccc66 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50590--a1333df650b99ae5b198a76933a6cc20a688b2f86444bed606de71206a877345.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e2f7332a53..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:39:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3efdc844c0..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3360--7a4c6f98272fbdf57b4a0d4cfbfffbc185dcddb0d662c40036cbf2624fb43816.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4adbfe2626 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:39:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a216d7888 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13849--088c5d1b63811f261b040751c75acd32810db24e1ffe3402a316b9d1b5b8b541.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz 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deleted file mode 100644 index 811da90835..0000000000 --- a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3298--f155e7b98d29279863cf97401341aa5c2463a9054b7f74f3ca57d53bc1ac6e84.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d225f8845c --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:26:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz 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b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..2ad2318716 --- /dev/null +++ b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_seg.nii.gz 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b/derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/anat/sub-mgh02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_seg-manual.json b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T2star_seg-manual.json rename to derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c4942b3812 --- /dev/null +++ b/derivatives/labels/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_seg-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_seg-manual.json deleted file mode 100644 index c57226ed0b..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:17:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1bc2098d1a --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105355--3b27d269c8df570e3e131e8db1471f663e688a0182cff9690432f1d5cb3884f9.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.nii.gz deleted file mode 100644 index c2a38ccb83..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14905--eccc0dd260090d8bce27c078f0bec9ae5ae6e4a5fe9983228217a583bded6e18.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_labels-disc-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_seg-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..72f3be1adc --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--5efee87ef471b090c637009e2686910ef6d1b8501410326066da7e782bf802e1.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5badfb6a46..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7363--024c24a6890dc9d241f3a04ec4269b13300bd0f3e23da2b9d93c5853059fbd0c.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5741e5c920 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..13c39e9194 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7354--52f06ccea606f838be23a8d5c7a833a4e170970a100a0c73721517361c290be7.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fa96a3c4e1 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--836718539d216785a5cc64a67762e39494faa2024e49c1adea2105c2be531bd2.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 743e56ada5..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:35:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9c7a633d3b..0000000000 --- a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3373--1bcded3f4df9721c2bd1362bd8efb2ba28f5e526327f8defad8072c70f9829bd.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4e8d82abfc --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:35:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6286e93f01 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13760--411a0a8a8371e5895711098681316a15f732529dbb156c5d509ef4f3e8a972db.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b8a70c8751 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 16:17:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh03/anat/sub-mgh03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..2ad2318716 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df47a9f86a --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14926--19982af6ff67718cb16c580c2e07a8caddc79ac973a2f8625619023ee70e872e.nii.gz diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..16ef5ab3e9 --- /dev/null +++ b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh03/anat/sub-mgh03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_seg-manual.json b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh01/anat/sub-mgh01_T2w_seg-manual.json rename to derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0183b77667 --- /dev/null +++ b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2186--3d29a3f6cc57c98577db264c0534a63b40d1e78b4dcdd57d649880d27b64d5f6.nii.gz diff --git a/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_labels-disc-manual.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_seg-manual.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_seg-manual.json deleted file mode 100644 index 5064fff990..0000000000 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 16:00:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..42d156453b --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105357--b7571f73c3539a09fe0133ee0cc1237e6a8a6490964d29b7a0cb6519e54ffc28.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.nii.gz deleted file mode 100644 index aa4d059837..0000000000 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14979--3612ccc978f7b92b7e54f1506d3ee21d75748ee68b2988f68ed76d38aeb264d8.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_labels-disc-manual.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_seg-manual.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_seg-manual.json deleted file mode 100644 index c5fb06cc0b..0000000000 --- a/derivatives/labels/sub-mgh04/anat/sub-mgh04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:52:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d55fb7cdd6 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5741e5c920 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c22a8fa45 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7337--134c4e3c49cfb6cf431e848dc90f06932e6957510055cd48419b92378eea7c4b.nii.gz diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..828981fee7 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..08a82c9360 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:34:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..69f8872274 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..2ad2318716 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1d9f0b6e89 --- /dev/null +++ b/derivatives/labels/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..67f5b59436 --- /dev/null +++ b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2168--2e9a33d49e69614c5ca6881900d2dc05d27e5cec12c026937e70ee110630737e.nii.gz diff --git a/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 1b5fd45c03..0000000000 --- a/derivatives/labels/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_labels-disc-manual.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_seg-manual.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_seg-manual.json deleted file mode 100644 index 0c2d9dcde9..0000000000 --- a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:27:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_label-discs_desc-warp_dlabel.nii.gz 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derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_seg-manual.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_seg-manual.json deleted file mode 100644 index 05b8d9e05e..0000000000 --- a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:22:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fb5626770b --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5741e5c920 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2e5198d9c --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7357--85b673165a8f035b07ff0bcd80b7abdd1f7aaf81b92506c0d968fd88dfbcc8e7.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2573995fef --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4d0f2cc388 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:41:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f0dbcf5e95 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6e8efdcede --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..346458996e --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14932--8dadc3d6a5af36b3f9bcdbddb97d2d1271c9f66199a3bcfa24324adb00cb6fbd.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..5b8ccf3e8c --- /dev/null +++ b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 12:22:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_seg-manual.json b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh05/anat/sub-mgh05_T2star_seg-manual.json rename to derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..683d4e193b --- /dev/null +++ b/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2193--3029dd3cd3cb33296d89c61c18ff44d257648c40af38046f76e61764c474daaf.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_labels-disc-manual.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_seg-manual.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_seg-manual.json deleted file mode 100644 index fade136b5c..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:53:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1213e0870d --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105343--26bd8c0845da6db7b73a16950ffb6c06335c71b73ac477157b2b9d0e79a16e32.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_seg-manual.nii.gz deleted file mode 100644 index 971a294553..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14803--8905616fa713be1f8476708758918e3a608dd4f24f7e3638d8438746ca99be97.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_labels-disc-manual.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..65dd420ab7 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50584--66594d073d391965ce3eeb382e00f1f847fc798e0de1f85c74fbc93dbb768530.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 37ed34e2ab..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:09:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a56843a25b..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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+1 @@ +/annex/objects/SHA256E-s13934--669e6d143f919abbf4069b4a4cca6c02bd170e95ee12ffb508d1a0891277bc18.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0690038568 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--481bbbf5fcf4d8f2fb979ef0e3d3f7e5a1cc7a74a0c603da4559da22cc7cac61.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f9b50126c8..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:40:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 58bd261756..0000000000 --- a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3334--babb3dcf918462805625d874fd53044f470571b50fbdeb064145a093617e921a.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..80af2d73b0 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:40:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..810e2a62f4 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13745--a829849c03fc3ca75e42075d50ce890894c2da7ef0ec886e410c2f7f5d6ecbdf.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..16ae5b568d --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 17:53:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6e8efdcede --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..93d99a84e7 --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14824--49fff64e6844acb260bea8484cd39255f7102c4b702f269f7008959bdb750703.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f054fd24dd --- /dev/null +++ b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..57ed84406d --- /dev/null +++ b/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2175--f88952cc9e2a6a4034591ece45421f84fef2c6b2239d3e51f46b1dd8277363b1.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan01/anat/sub-milan01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan01/anat/sub-milan01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_seg-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_seg-manual.json deleted file mode 100644 index 780b9c0d26..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:20:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b34220ca42 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105317--268d23bb0398892ea7898ee868b60257116330889a74aa94e26c38e6b189ff39.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.nii.gz deleted file mode 100644 index f64a3eb342..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14769--112e2f1073d0453321c82556f4f13d4c8e05addefbfbd6eb839c40c83bddf7ae.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan01/anat/sub-milan01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_seg-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_seg-manual.json deleted file mode 100644 index c7f10cbe09..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:12:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..de355d8ee7 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50556--0317881ab2d4adaf3e48e0110d7bab652013929e72067319921b446b39cd49eb.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 803e1042ac..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7263--ae90606d40165719092a8dd1ae3dd12f634aa29ef55e3967ba1141683b979fa4.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37f65008b2 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bc3154b7bb --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7210--f8eb0bb3c643a52127b342b755e39ce82c74fba1e4b5286f4ef5485efb577be4.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9dd684f3ec --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50561--aad347974b81db7a938d717d0f8123148ca61e55beed7a89a6bca5ef333fb6bd.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 27850d34eb..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:45:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 555c09a371..0000000000 --- a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3359--79157d85377743837eae1ec57786bcac41cf5f3bf72fa1eece0728a4d7978030.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e7073f3dfe --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:45:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a18418f620 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13761--a2074d515bfe4054768c3999260010e99d146488f25475f936c3d02cce29e6d2.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..689b675692 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 15:20:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6e8efdcede --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1ec99517a --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14790--7705f6ebd03cb114b1a0f4553a6984068fc7a29714093238b349b2eca11aa648.nii.gz diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..84eada5faa --- /dev/null +++ b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:12:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/anat/sub-milan01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/anat/sub-milan01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_seg-manual.json b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T2star_seg-manual.json rename to derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c7786ed9e --- /dev/null +++ b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2028--c40cce7e3bd58be14ef02681d76811050ec316d303850b2ba86505ad91ce9206.nii.gz diff --git a/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan01/dwi/sub-milan01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan02/anat/sub-milan02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan02/anat/sub-milan02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_seg-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..403e93f188 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--66cecd813d1c94a26592de19afaa0d84405b5e70d403f8db75cd142e50779232.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.nii.gz deleted file mode 100644 index 5ea919bd28..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14715--ba547dc9589de919c0f7afebc19b4837361d554a67130e2dfc279484b5911d15.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan02/anat/sub-milan02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_seg-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4f88e9565a --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--5f4aaa3836568c1d86f7d1624ba9abb5aef0415fbaf76cbcf2195f45b06228c5.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 00a65faf15..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7277--eb60fa15a05f6c4f4b3110421323f969ebe91e5b7123aa98ef613e6d7f68fb59.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37f65008b2 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aca5bc4822 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7238--011835d2727f0c2027e888ce9d557f01954beba6f98d94284266ca34fecc1ba2.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..38e355821b --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--4a000ec1c1e679c9edaa2b21cb42a94a9aba28b69707e9d7185fd5668539e225.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 08ce2de4ee..0000000000 --- a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7102--ab67824cb2cd324fdd73ba769c4acd2804a00103f2afb37449eae8aec2bbd274.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37f65008b2 --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d65b4b5d1f --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7120--15975d7c698e984ce9c2315931a4f6eb4e64861dd5921a53f0b99c2d96b44cd3.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0a4535ffca --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6e8efdcede --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6fa9a89ddf --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14736--4af713a9cdcc3adfbb89effd8960575710357817799d70a454c41b89b6357530.nii.gz diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f054fd24dd --- /dev/null +++ b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/anat/sub-milan02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan02/anat/sub-milan02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_seg-manual.json b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh06/anat/sub-mgh06_T2w_seg-manual.json rename to derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e35aa8e13d --- /dev/null +++ b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2079--91f0210266faea786e9ec05c5ff2a45c5b7ee5e4feadda35ca35b8ce65fc84be.nii.gz diff --git a/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan02/dwi/sub-milan02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan03/anat/sub-milan03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan03/anat/sub-milan03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_seg-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_seg-manual.json deleted file mode 100644 index 2b86ff145d..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-13 17:58:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..621c6f11e8 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105353--c0038ff157b90e3aa24be62ccc9378fef373b6de0eb3991af621c594f43a982a.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.nii.gz deleted file mode 100644 index 5a25dd432b..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14659--362e9d78c58b0adccddb9b5614e187778118957623b77795fef80fcfca900631.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan03/anat/sub-milan03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_seg-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_seg-manual.json deleted file mode 100644 index 8391a94b0c..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:38:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cb1c915638 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--c377c0cd39070651ced76ae40e0e44ffa3483fc06c3f94a2dad79d09907617c5.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 01be6e04e2..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7349--b239db0e3d6de146e07c17db6005d8962bc6caafa1a930d0235671b872b2f01a.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37f65008b2 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ddc4b29ea5 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7327--fa8657f13234add0b88a84365c2ea162f867ebf5b742b1de9b9e62622d4ebbbe.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d21b454b33 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50595--8590ec0abff8634e5ff972dff8ca15e0ffd9a609c1a0d4f8d14e4015ff063c53.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 5beb6b07f2..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:46:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 95f0b0cdac..0000000000 --- a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3320--df290ffc7438db32c2b2a4b2635f9dc1bf9d81e61e6f6171020334a7dee30586.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..382103e533 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:46:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a911d11f4c --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13694--0020690985a664e043e687a06419fbf851ab2b9cb15e246e8c91b4f4392b6f5d.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0a6cf85aec --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-13 17:58:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6e8efdcede --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..479cfc0957 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14680--fb5049a697c59bba914d32e6afcc4a32794b958115a5d8dbc98ea77b350be436.nii.gz diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e37b009907 --- /dev/null +++ b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 12:38:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/anat/sub-milan03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan03/anat/sub-milan03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06828b3c94 --- /dev/null +++ b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2069--fbb835f78918d3561441e3442a46b7ed915907bee6c0e89f6ff227b7626bfad8.nii.gz diff --git a/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4f447e3d40..0000000000 --- a/derivatives/labels/sub-milan03/dwi/sub-milan03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan04/anat/sub-milan04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan04/anat/sub-milan04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_seg-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_seg-manual.json deleted file mode 100644 index 35694f3987..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:25:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..777918f951 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105344--5e14951d6a0294b9f167622deaca4489c778f69435da3db3f199420681645647.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_seg-manual.nii.gz deleted file mode 100644 index 4cb948c9bc..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14886--8da48fbbe42b0e3faa2c2ce7241dd464d65e13ae6d2fa0a54834640cc08e0ea7.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan04/anat/sub-milan04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_seg-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_seg-manual.json deleted file mode 100644 index b23a3eb8dd..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:20:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..190bbe86f5 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--48bc91225ee465b5b0e37d9dfa96682531c44dba9bda7b42e844be5f8960bfa4.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 90865fa1dd..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:17:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 01d5dd0490..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3432--94490c7d9ca13b9ae630331ad614e05430f23b9d6b11b4dd6388720e1a430a67.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..255fdf7ecc --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:17:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36fae63630 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13897--c5c472963c32acd07ce2cb861e96585b280326ca8937d4ab3dd8bc0a5d677bc4.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..eb927999d0 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--60ce7b46037728302ebdf1d3997054df269dc4b49041406241ebb0cf4fe83fed.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 424b6b0c31..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:00:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9c44e17635..0000000000 --- a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3354--db048e565ab4ecef4684757418b2790e02e1f3c3a81416b9ab91b931fb19d134.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..17d7953946 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:00:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c89851c8f1 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13767--c63d8501a5049ca6c2a091af060c0e14515d730c683c0acfa4f6f9627ef85c0e.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9246acc33d --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:25:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..194636e47f --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..08f640b42d --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14907--c42b55760c8ddcac9e3094b155fe50fd0b3714da1812998163180dd3a3baf20b.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d203ad81d5 --- /dev/null +++ b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:20:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan04/anat/sub-milan04_T2star_seg-manual.json b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-milan04/anat/sub-milan04_T2star_seg-manual.json rename to derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..31b8851eeb --- /dev/null +++ b/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2070--55f90bfa954f23f23fc6ee23b39718e0c614a6b505c08b2ad843d094cd444d00.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan05/anat/sub-milan05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan05/anat/sub-milan05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_seg-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_seg-manual.json deleted file mode 100644 index 000aa11c62..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:07:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7b768f8d03 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105349--2146fc99a15a320bac0d5e357746ba77a7eadf2fd02a8356603b2ed159bb41c5.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_seg-manual.nii.gz deleted file mode 100644 index 160e4737eb..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14859--bf915405f57bc37386670719cd87fb7556bea8259f0b1cd5533a55cb8a538bcd.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan05/anat/sub-milan05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_seg-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_seg-manual.json deleted file mode 100644 index 2793a94dea..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:40:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cd23e5a18e --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50591--8c44e733e0eea617b5155a5255e669a785305181e4e5fcd1dbdccc19aca25a4e.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 91b7543dfe..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:11:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 13c3cc0074..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3438--5186a259bc66ac5252d91a3164112401743d4a79b2ca0d81343a2ceb298fb9e2.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..56fda0746d --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:11:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1db40ad35f --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13929--3347d8669bcd594e23dec153aaa6d55d063df4a9d63d619bdc680e7f1b3b5c86.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5ccfafd722 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--26d587ca2fc7e215a2167f7e7a10d96a46e8eee8ac6399b1b7cde4b81f6d0aa4.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9d2feca3c9..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:38:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2fc8ceeddb..0000000000 --- a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3379--a3058d6e6561466672791458b4ed3287235f215809da7df1c29a4274b021ae33.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7aa5e15867 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:38:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2b06ab2b77 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13828--bfe5cd27dcb71ca6483168eeca7c0b55617b41f3cf04360ff0e39115637268dd.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8816549335 --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:07:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..194636e47f --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b19c0261ca --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14879--5971f9e1d05d1f9b95bf420b644be8900c3c85c13e39ae3e874681eec349c20c.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4ea086e9ca --- /dev/null +++ b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:40:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-milan04/dwi/sub-milan04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9c2e4b4340 --- /dev/null +++ b/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2062--affcc4b33bc1efd4f5a75cbe0ab6f9d91a551e41c332e078022c00c89dd61075.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan06/anat/sub-milan06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan06/anat/sub-milan06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_seg-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_seg-manual.json deleted file mode 100644 index dcb61a4ec9..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:04:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2968384806 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105367--b9fed19884ab9d6b02bf0005a7ec8a30895b5a88bda5dd7e201db79e63ede956.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_seg-manual.nii.gz deleted file mode 100644 index d44f47696d..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14971--80dac952279f5366dddd07a8bcdc9ce5d9d3ebacef27059b880aff5ae5edd03c.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan06/anat/sub-milan06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_seg-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_seg-manual.json deleted file mode 100644 index 378b6d36ad..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:24:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f83fabfc76 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--1921fbb43e51a6b6f79481f4352401157f7f4aa267752674b71dd904e17cff87.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6e89f088c3..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:21:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index be8c1c2586..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3435--ea5e810c5c7a54a132ba940e708c8f54da35cd7329503cb0b5d576f359969eb4.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9dc9fd33fb --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:21:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..33f8559f73 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14001--13259e56161512dd2ea7fe8e824f64f40bc44b5dbd77497bf8873f22006e12ff.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9604bb76a8 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--506238b14374d01e9487c7ba56f10421bf8cd77f7d93f35149494118a3e497e3.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b62d8702ed..0000000000 --- a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7223--036a5b0bec7a1284d57ea846067106f2a17a57cff8952e3fe8ee64d5214ebdcc.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9113114484 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..632c9cdb38 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7191--27d43f94ac5ff6f7f12ed33849a08ee3a360803fdf5503ef00c493659c6fafcf.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a4536db7b6 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:04:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..194636e47f --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..87c3e32ab1 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14992--82162388043271043b9c3ad82f1ad999650b0275fb8d83834604b74b750fc56d.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..255ff77589 --- /dev/null +++ b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:24:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan05/anat/sub-milan05_T2star_seg-manual.json b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-milan05/anat/sub-milan05_T2star_seg-manual.json rename to derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..174298d5d3 --- /dev/null +++ b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--f2e0f5b82752565c170f8781dc5aa0b8eb374e5bc0390fd42d758217d24e2d70.nii.gz diff --git a/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan06/dwi/sub-milan06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_labels-disc-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-milan07/anat/sub-milan07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan07/anat/sub-milan07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_seg-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_seg-manual.json deleted file mode 100644 index 8c11e51623..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:21:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..69baab5aa5 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105305--8e44d577d4e583bf82a5df877db14dcbaf03cce4309d0bbd4f3d32c51635ffaa.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.nii.gz deleted file mode 100644 index e662ec7995..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14735--527221510c140cad60473089cd343f5d1757da416501b13349dcad60079dd49f.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_labels-disc-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-milan07/anat/sub-milan07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_seg-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7550c8cca7 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50557--a7828ef5c10705f945249f32ee0b4045f6c3caaeb00d49910dc7a51be5eea8e2.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0bb11a9847..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7242--e1d2322c4ac4064f16253a14c72dd6991201d8396849a107426790dedc081e6a.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9113114484 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4b216d3d14 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7239--244d1aa9b095bc88d137ec104976e8654b23f42f39f7c9bc6d6df6ce15be2a96.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..00de225711 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50545--cf347c8e7fae2769efa1acdbdfe536073671fed1bd52d6c44b254eb9e39132ad.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2321bc4dc5..0000000000 --- a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7085--5f440548250fb86313f6799e068f48516710bcbd6dfccf90ccabfd02e3b6e7a7.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9113114484 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36dd2722ef --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7068--e8b31bc3d205fddd85c829aa05a96ae79ff95175985f6caf9d850df5a1c007f2.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e7209c0118 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:21:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..194636e47f --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c61d4522d2 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14756--f446782a071144ae9ced995be5f9d00bf5da5dacd9ca4e92507d3ec10e4a02b7.nii.gz diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b0d6958cf4 --- /dev/null +++ b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/anat/sub-milan07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan07/anat/sub-milan07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-milan05/dwi/sub-milan05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c10521dc1e --- /dev/null +++ b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2037--ce0444faf652c9d85e96ab7e73fe3838732be26f52293d033eb8afcf62474e40.nii.gz diff --git a/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-milan07/dwi/sub-milan07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_seg-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_seg-manual.json deleted file mode 100644 index 701e3ef0ab..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:45:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4c6c28b9d4 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105328--8bd8d8e5e30f92cd1a72e7f354cb5746c899db42979d65f0cb991ebb8015e162.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.nii.gz deleted file mode 100644 index 564d7146b6..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14826--c5905e7afe5b0caa954f499dc568b388d02493679301ee6598e3ec7af49ffd60.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_seg-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ac9afa35e --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50563--9d67c6f511ee2bf3499bf3ae359d484d04400d302ce44bd93a567cc968af570e.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e55224a790..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7288--b52a2457be0434c258f8fa082b8b4c6743dfe9c96745725338dd68d6d2cf4961.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9113114484 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0f466654df --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7285--d1acaf75e86d15215b4db4d15da70d7bc004f48da1281998f54ad362349bfd1d.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..44dbda32bf --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50558--535e143b5021520a2dba231ac1118f39bd8472a3913d73c71e45884dfba220ed.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 544e395648..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:08:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e0603479f2..0000000000 --- a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3334--4e136751b801c89b35f324e16451ab791005b8e8b31e13af70301a29b1c3b1f5.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0a6fbb9247 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:08:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c3960ceda --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13711--73cc890d2a8a4e510c445f0a5f4790dcd193ba187e258acd10b3133bad9e551a.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6f2478c51e --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:45:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..194636e47f --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..43419d7e00 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14847--d102d801a24a31355480fa8fc71ef81b29372a72303e11ee3f772a36a0c5cbaf.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b0d6958cf4 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-milan06/anat/sub-milan06_T2star_seg-manual.json b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-milan06/anat/sub-milan06_T2star_seg-manual.json rename to derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2df543f019 --- /dev/null +++ b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2044--83744d107d80cec83cb29d4162a5618377087bb83f4fec4086664a959858ae45.nii.gz diff --git a/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_seg-manual.json deleted file mode 100644 index 48143cc938..0000000000 --- a/derivatives/labels/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_seg-manual.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_seg-manual.json deleted file mode 100644 index 8d9fd28e36..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:40:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b1b1e262e --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--7accd7b8f016b4b89219a12dd47b85d13662dc23b101dcb07ae8642b0fbc7f77.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_seg-manual.nii.gz deleted file mode 100644 index 879acd89b4..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14970--24e50b2904e716c67f7fba1ed0cdd81d043ce4d0e12d3f8ed3501fa01ac2caa4.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9fd9627420 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--35bf3126f8f32cfd19fd53df623b92ef0ee1f0dcbc92b3d9124e268320bdae0d.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a025f229d1..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:12:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9da5b76110..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3469--7c97283df34a0a8fc16cfc3b5101c6d1058b42dea13d15a0b5de714e35c2d19d.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5ae84f92c5 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:12:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ca6ec9f1e7 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14022--172bfc26f6a90f8297ff6e1a5f47fac14d3065e91ec93e5e618642acbc15bf6c.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..776a7648ac --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50579--f2f1fbb81408a24fbed57c6208d40e655f310820cf8bbcc26054ff89cb95f267.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d25d8d600a..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:15:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index dfdb570d25..0000000000 --- a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3404--f683582af9121f605c5cf20d0bc30ffa705952737a8c652afd0d11b6a73caa0a.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..23dd5b7181 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:15:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90f3359b4a --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13770--7647d9314c3ea801b705b2b07c8ec59eae97f9bb1e570729fea4d2d9a21de624.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..34ec575abd --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:40:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f050c7c9a0 --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a5a920efc --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14991--523c1514e2abf4c16ff97ec3572e9577bba1e9a11e202e3e78838aadc26c3aa1.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4e12aa56ce --- /dev/null +++ b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_seg-manual.json b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T2star_seg-manual.json rename to derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7e27a09162 --- /dev/null +++ b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--35d3bd7ff242d40eb81b664b703abacb11e39b3e0c82a2d8f526b306317e07c6.nii.gz diff --git a/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_seg-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..436d05b486 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105349--064934e83825399ef4fdb094eb63d680684c9d1dddbe0ba0fd2ffd5c10d26b2e.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.nii.gz deleted file mode 100644 index 130ee84d12..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14711--259801348e4370ff2c304a6e1048ce0ff823987195fa9d9ddd8010a8e5bc3f5e.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_seg-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c9f6189a0a --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--5ab7b740baefebc45d127a5bc684eb57f41e264cac60e4585b0344433a278a8e.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 750745e43c..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7287--51c1e8ca5feb6800a28da44b2bb72f292d578522a1dee200a3bfea75a9bd28c0.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b8be599f4 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c504a38f9 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7279--6f017a9886c907b7a8ecc3fcc20d806b0a7f6f50e0142635e317d364e6a08acd.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..809b5c265f --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50589--1fb8ddd2e34b525d513583db61a561fa7e5516cc65a5f0ee6f0af2860881787f.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a552f09e9c..0000000000 --- a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7109--506aae9cedc6228083cb064baffa6ca4c1fe2e479ef0834ffa2114985f19ead0.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b8be599f4 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2474a99e04 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7087--1a94c4e144b5fcc4e9885c0d21721cbbc0cbea9b75eec62e913449a9bac51f4b.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..438c63c737 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f050c7c9a0 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e6af8d31d3 --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14732--40e3c1685acd8a7b864583e3f1e5ebb4ef23e5501d2301c51432c7c2676b333a.nii.gz diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4e12aa56ce --- /dev/null +++ b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS02/anat/sub-mniS02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_seg-manual.json b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS01/anat/sub-mniS01_T2w_seg-manual.json rename to derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7f26f3bf4e --- /dev/null +++ b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2070--46a9e88b0e21f46b972dab7964bc84076e6e6765206cd68a8aeb807e5281f429.nii.gz diff --git a/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_seg-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_seg-manual.json deleted file mode 100644 index 1253661387..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:33:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b7039db1b --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105341--29243c8bb5c42c3cb62bab7a1c8c16aa53a2447e8ca2578a3806b97315137c10.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.nii.gz deleted file mode 100644 index 1362fc3f2e..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14682--a83b4fda26f926cc3ffb72e36aa3c569cf27bc6e04528ec81b7d3460999eccdf.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_seg-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4bf0eb94a4 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--db70e3414855b9644ab40b1f99b64403a76c1f4d5a0531d5eb0d4a8a578bd2f7.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 59f4893d6f..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7240--74825441f9a6bf0bfc43452aa779e0e8b824d4ad1b82026156c91f4612680b9f.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b8be599f4 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..917db229b5 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7211--7fcc2f830352eb77032b6f697544ecc00063ea01f332193ad5faef818490003c.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..13cb000c18 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--8400b97cf28a6b14a9b5a4e828e1ee6137b8d9ac19acdb025c8d268a2da57861.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index cfae42b683..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-16 09:39:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index dd874a3ea9..0000000000 --- a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3298--95aa2da0e0aa9974c0157c2fb32821da653d79744eb9ffeff1299b773611cd16.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d5c4bcae24 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-16 09:39:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b9c32ed7f6 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13568--0223c44c87732111c902ff8c09279b0ec42fc294d8a72deeb8b7b50b55480fe2.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..745bdafd81 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:33:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f050c7c9a0 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bc9e679668 --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14703--3306ce2a0ec783390224174adc075195fe9db6c4acfd30b47706827056dae47e.nii.gz diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4e12aa56ce --- /dev/null +++ b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS03/anat/sub-mniS03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d09e283f69 --- /dev/null +++ b/derivatives/labels/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2064--8167402bcb898ae34b36629ef473a642fa7c76ca87189ff3d331cf2faf915569.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_seg-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_seg-manual.json deleted file mode 100644 index 8eaceccbfd..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:13:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bbc9a5fe25 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105357--199a7891df1879055e1269643df2dbea976b1deb422703ebbbefc4568520294a.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.nii.gz deleted file mode 100644 index be8ee878ff..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15126--5530fda69d25e7e2184afad7e4c34cbf1a8d49f03c1b315a14b3c2db768bb5bf.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_seg-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_seg-manual.json deleted file mode 100644 index f78b5ac98a..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 12:29:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1e2f522d03 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--4804529d8c6d90c17d54fedb93e30867e0e6df311103b69a8e73a69c3603d730.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 989d5baba9..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:15:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index abc3e1ea8f..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3467--fa85297274e4eae4c82abb99ddafbbfdb08ff94956c52c8bfe1470034df22e44.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1c874abd27 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:15:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8739745985 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14016--593d31db58c76f055095c8de856207910655a94c12d32204a1d14a1649924700.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dd8f92027d --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--42e77091fa1edb0a6d358c01d05428d058ab9aec72fce4c982eef9a2ea28a582.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 71ec77af4e..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 12a25ca737..0000000000 --- a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7270--abd58ec1592030ac47d5d72cb084a9871d3a4ec7f18b8eb34290e547bb1284f1.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b8be599f4 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0190efe89e --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--0c1758a9fcaf81901034f8cb8a666768333bcad3eda6350a34f476f296d30d64.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..642f4458f4 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:13:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f050c7c9a0 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f49425bf7a --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15147--88d99a6c8d6e91e5e18658a0cb211cfaafe673185c3110064d3e349bd2930951.nii.gz diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f0bc7c4531 --- /dev/null +++ b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 12:29:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS04/anat/sub-mniS04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7e13cef518 --- /dev/null +++ b/derivatives/labels/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2091--890f1d682fb70723f44f0d387dec13a0d79f101acf260ead451ee52f88c0118a.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_seg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_seg-manual.json deleted file mode 100644 index 8448624684..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:17:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 1d4a734524..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s106804--89f8cb2152dcde677a9e3e705d5985fd32b76ffb1814473feaad8f24410c6bc7.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ece7d747c8 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105340--f4ffbce174f3e336b3a8301aaa3994ad0f775ba7715f0186d94e63fb65643229.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.json deleted file mode 100644 index 775aee2f44..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-21 12:53:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.nii.gz deleted file mode 100644 index 6fa57a9ff0..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6728--2bb3531209ebc19e9a696475344fb76fae6504e895b9075b2e166d589f003a9a.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_seg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bbe778df89 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--0aa3bed6b6d5b4e9b888f2974089dcd9a203ab95ed9bcc4bba7c58723f6e7ff4.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8eb534f053..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-21 12:51:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0eef2dbbc5..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3400--6b187e7982ebd87628d865ff877076a84d15ec2a73a8adf61680c891db6cafaa.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..00b512e92d --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-21 12:51:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0cfe7fc048 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13797--ca988e129a0481de3f0512af475b3a4c09eb06772a2499a69a79088abed9ab05.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8a13bac767 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--a1dbdb74962b1532dc88a9f254d5455bd5302728280b79c10b8616b62ee24c68.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e677098e79..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:23:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0ed9560587..0000000000 --- a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3326--8108cf2e14362bc814f61d6ac2848dfa23fe46181ec8a01645c2c0bd5bfa8cdc.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fadb200c77 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:23:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc940ada17 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13612--e8e64c07cfe36afc95c39bf4aa72affeedd19e33b9ea78aa88e74a6e1925c24f.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0eda2ea53e --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:17:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..9b23e58c0e --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..2efaff4fbb --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s106817--0c1e717df16d006467ee5ad47cd5008840252df44ead5fea6f19438213dd47e2.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..ee6c1a9570 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-21 12:53:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..41c606c6c4 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28066--8ff6ef5b9f79a3a652203dc115c939f70a2a52e5ef34f8043fba5524891d449d.nii.gz diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..58ccf3a545 --- /dev/null +++ b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS05/anat/sub-mniS05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8e1728ad60 --- /dev/null +++ b/derivatives/labels/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2064--f5e0f49335a702d0a08a4c90e8381e9c229f3836e86f72738e3e0275a8d06620.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_seg-manual.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_seg-manual.json deleted file mode 100644 index f2fff99851..0000000000 --- a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:59:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9bd8d70dd7 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105347--da8c4df26e100b8adb4030a35cecae54e5bab32ac03948daa9d46898478b2ff8.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_seg-manual.nii.gz deleted file mode 100644 index 7abcc65de9..0000000000 --- a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14939--bb82b35235f9a52e3af0a7ba30474d4efc697662dfdf300a72add0f96f2ed390.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d7ac1224d --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--3b1d90e03aa8706ea902eb4667fb7c7119416af1865ecb682ade6d511e72819e.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 41e69fd7f1..0000000000 --- a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7435--065b7d7c40e280d540a9547a0315856efc97c016fe79444f5b55a5edcffea383.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4289261ddb --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cb3cd29d99 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7409--0fe7199313baeacbc9e8b57afa80b3f465451c0b06656b6e3e1b32337ffc5e96.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ee810e5e7f --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--a8c60d95537e2fa91fdb16163493a49e6062166059b47d147a761058fc9617ba.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a190b12a1a..0000000000 --- a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:05:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3e8df2a4b2..0000000000 --- a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3393--1c1679365c9d7c7f264ff1096a36682fc6461ae6f7bbb306019a488b546e0f7e.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a670972af3 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:05:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..48deb93b2b --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13829--ff63195b29896f095abc52297ada009e6943e08b7dd3400653c66f280aa3645e.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..56d29e82b0 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:59:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..391e7d6176 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb2a527f15 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14960--8fbe3a47439df9cf14c0b023bdcb9b02cd54733e7091aef6f1e8e834d8c701a5.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..108e4e51a0 --- /dev/null +++ b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_seg-manual.json b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T2star_seg-manual.json rename to derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f2628f4c58 --- /dev/null +++ b/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--f607058aaf50d2e80cfd32fccca230092affa53cd3b38b8bdedff3a8f3b3c6b3.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_seg-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_seg-manual.json deleted file mode 100644 index ac1cc19203..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:09:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ff8e47667f --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105295--4368691076789c95cfb4f7f6f048424f6a8b7ca67a0f07a9b1c0ff9f673fdf5a.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.nii.gz deleted file mode 100644 index 867f301098..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14923--220a8f2f6046f8394463a29a08d1e3a40a0f97463766570a280a295f30ef8228.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_seg-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_seg-manual.json deleted file mode 100644 index 703a22a3f2..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:52:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b1b53b15ca --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50561--bc02dcc3beaa4126caeea35088f3fcc13e03a5e26d310b387d3eec748e00bbf1.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4381beea58..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7267--53daa5910d06142324026b1d0b732dcdb61c2dcc5e3ad1cc09d442712e7950db.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4289261ddb --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f7a56c91cb --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7273--5345978cb2b2f1c3ef8b484d236e3482b20e671d6ecaed73a8626745e715cc68.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..af4bdb339c --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50542--ab53090a64b1a14f9b87cef732e764f3064192868c3b09b4f7d5e139e3584c82.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 196f7466da..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:13:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 189ea28634..0000000000 --- a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3367--5732bc652b8dedae38da883e45a8bfd78b3f6ac4d973c04cca3dcd2c622a9caa.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a3208c493c --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:13:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..03b223b754 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13766--13a3e807eecff2b0351b0c4dc3769bd19881646a12796e03ebf6b89b7d6c18f5.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..556aeca436 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:09:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..391e7d6176 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8322316099 --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14944--b89e42fc510e23256b7c531bd1de8b3101e31de4320ffe67da6c1501e6146412.nii.gz diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9dd2bbd8ed --- /dev/null +++ b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:52:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS07/anat/sub-mniS07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_seg-manual.json b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_T2w_seg-manual.json rename to derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..927d9a1818 --- /dev/null +++ b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2036--cee2805502540992709ee1779f2c10b0b5cc13522e754e82042940dd3a2f0ae3.nii.gz diff --git a/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_seg-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_seg-manual.json deleted file mode 100644 index 13f40cdf3c..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:23:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..27e7eabd04 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105351--2ff81be0442c5c2a8849ed5b9918a60bfd4dee3281e3326c2b763fcd6ae06ad4.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.nii.gz deleted file mode 100644 index 500a639302..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14890--5a7f7ca975c727fd72cac5f8cda18cb3b5180e38bb012bb32894eb41e2164216.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_seg-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4eec1e21b9 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50587--b4095be4815469b9b5172a4b6f6c62e40d7b80197404e3dadefca8be46d40c0b.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b4b90a3190..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-21 12:45:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6c74d220c9..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3486--f5fd5ea124a3f2663eeb20977b764b2cf1f8a3910b8d53d0f0da44c812990d3d.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ea40663e79 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-21 12:45:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..550a85f2b9 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14151--e4b2373ff3f6c5076ab6eaae813406b874435653e137f8765995949ee205508b.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..445bbde3f5 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--dc901dfdfe1166a7919a2e20739b293fa3ccc863991c5e5805fae21274934f99.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 4265a7a684..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:19:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9967d6b82c..0000000000 --- a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3434--dbdb5be75f3c2fddee93770502c74397865fd619c5b90932ee16a105b3fa83db.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c83c4733bf --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:19:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..93e0a26e5c --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13903--229ad80dc40dff98598815cb9ca21443811bff6194b724ea3a94ba4f70162400.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8a455773e4 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:23:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..391e7d6176 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dbb5e3115e --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14911--fae14b69f71474201f030c11d701a7b8c9ba23bd2bfb69a4f74d9f0c4cdd06e4.nii.gz diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..108e4e51a0 --- /dev/null +++ b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS08/anat/sub-mniS08_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fbf768059d --- /dev/null +++ b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2067--7cbe6595361e71c0b38c7de736c821897575605463fa72e75141d0d2bb4ac123.nii.gz diff --git a/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_labels-disc-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_seg-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_seg-manual.json deleted file mode 100644 index 5c786f0f9a..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:28:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c34f5b75e --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105354--61dfb7f6d71b164e96717ca7b3c39d13173e2c4f849bde4e5caf19cf61d68770.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.nii.gz deleted file mode 100644 index 79d30d8d8b..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14878--587c5f7272e11a605a2f98a31e276d97ce8911f316dcc2aea5650df6bea64482.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_labels-disc-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_seg-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_seg-manual.json deleted file mode 100644 index 610dac09bf..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:02:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..65d7c927a3 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--69960d479272d56ed6974a91392770385b881458bc85cb52f9f9f1f306a95155.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 89ee975e1a..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7302--9bef8ceac3e57855befa2c3005b4ab63ec86e79f17282edb0f0181b30644e1b1.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4289261ddb --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30bd7c4cdd --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7298--8161471c282c6b4a1272368307058a53597ebca8e520ad1e61b8c60d211d518d.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6f3171db43 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50576--6eaa0997b3bc1f479096e52f66953371a10e8e81f02f2912750d80d14bf6381d.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 957ea06a9c..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:19:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 47c8790ea2..0000000000 --- a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3320--5ed227af17edf5dafbab3aa9d9c385faa7ac1829373a3bca4f8526234dd7e299.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..08d9b345f5 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:19:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5781039c1 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13710--160bcf94ee2e2b2b890420b42e89f8ace1a85fe68152e64b7501378cadd6b0a3.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..67f284a82c --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:28:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..391e7d6176 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bfef302fb4 --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14899--7579cfd3ada800352fcd7a22c79bfd814d76a3d358f4d5f7d7620bd00e3b3a69.nii.gz diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d2925b89fd --- /dev/null +++ b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:02:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS09/anat/sub-mniS09_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5fbc31d368 --- /dev/null +++ b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--88687b53dacb6ba4be919b331a959a8bd8fe88e165bf6d92730ec4585be0154e.nii.gz diff --git a/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_seg-manual.json deleted file mode 100644 index fcba2de9e3..0000000000 --- a/derivatives/labels/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_seg-manual.json deleted file mode 100644 index 2db9cb4a28..0000000000 --- a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 10:47:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8f186c0f7c --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_seg-manual.json deleted file mode 100644 index 4964d454de..0000000000 --- a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:46:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..da78c2dbfb --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s7363--c4a95c1b0f83868c65354c35d8e0ee881b9231d8f3d911341a6443709f34ec0b.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4289261ddb --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..483afa7948 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7299--a73fdb7972ed698e01e12075581be8d79de24bf40778ebeb82bb105be5d3dfc8.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aae8062658 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--9ea992ee9cf763f15a55079fcc3cc67aff21322d5179e5b9e38ec7aa41ec2334.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 88c9c970c8..0000000000 --- a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 13:43:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 143157e8b0..0000000000 --- a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3328--90da1fedb0bcacded654f774ec3f6e9568033326a91172a8b670fcf84cb5a09d.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..eef5dbf380 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 13:43:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e38b15d320 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13775--3540811b5ea26d9777459d412c6e94877b6a13b988a4b133bc539d243407cb55.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a76a8bdc46 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 10:47:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34fe4383f9 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14829--390a1ae2e97d34f193918d59d1c6665fe4cac67655a1802d339e6af63e3a9d88.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8a531f7c02 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:46:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_seg-manual.json b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai01/anat/sub-mountSinai01_T2star_seg-manual.json rename to derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4fd45d2b6a --- /dev/null +++ b/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2197--ef86da9ebb91be070f495c4734aed4799930b74c78a333b403bef01637ae97b2.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_seg-manual.json deleted file mode 100644 index 93ad82e0af..0000000000 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 11:36:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..10d1d6bd0a --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--baf02be58e3d7b11c1543e286973b4fb8e6ba96f95b2a744f39a0bbba348f8d3.nii.gz diff --git 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b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c1514b64ad --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--b36b0926cae5211e2fb21ec661bd2d386ef14a2f55cccb5db9eb2cfef23db4c3.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b337d4db8a..0000000000 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7290--123b6f1e39bc62e9d39685270e764854f637694297728cbe0b696c4c6b2c75f8.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4668b1db03 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f9e3f33a03 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7282--c991d1b807c2518aa2d27e15bdc61a752fee48b2866eb9a1f1c68afaece1ad51.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cbf026555e --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--72a38cff8d50d3d411199b8b4d55ccff0bb9e1c2a408ad301ceb4177cd56dbaf.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6f6d4edf30..0000000000 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Benjamin Carrier", - "Date": "2021-07-14 14:26:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3133da88db..0000000000 --- a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3311--9b709afbac8bbaedd8cd8a7b6cf47aad66b9a37555788c3ea54ad933b8216f9f.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..632556b271 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 14:26:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c7b03f0ea7 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13719--3708ee6bddda152ddcd7fcc64ef26b44977d7611af3fb6d492016e216da30f54.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ddaf45a715 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Benjamin Carrier", + "Date": "2021-07-14 11:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1f835266eb --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14862--58704eb02741c906e63aebb5f874910cd9823c1571619918b71f59adf3eba283.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..41fa3d7ed5 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e2d7eb7c0c --- /dev/null +++ b/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2182--fe01b01ebb93227650acfc78b75f7e7f07241f2d1738f99eefdaa60bc114d9d2.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_seg-manual.json deleted file mode 100644 index 44decf92bc..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:39:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2star_seg-manual.nii.gz deleted file mode 100644 index 4a1c2d9079..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14940--0e231e4af87d1bdbf0060090e40f5c167dbf3a78e139e285d58fbb0565143028.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_seg-manual.json deleted file mode 100644 index 90c00663dd..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:49:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4fa304c2b1..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7376--0d3fc2fef6acdf60712e62a7ffd2f679bc30d25a424f08a65ae1b459f952ad95.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4668b1db03 --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..771f90fbbb --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7335--c2bf90fc6b90f45259a6f0a0f1a4e6b5ffd8d43b4072544d176d105ba6f07315.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 322a7f4ac0..0000000000 --- a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7193--d3a862f54195fcb528e7251a14a5a2a98f469f58f4cda529b87bfdde9357d093.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4668b1db03 --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..97ed122868 --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7170--ad2f44bd6b04db70bd23cac6fa40b7cc4d9af91d45a073b213ef44669f0e8db4.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..329cab4b79 --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:39:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0c47fd04cc --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14961--9305242d959eefeb8693f8752dc38aa1e45f4f9a576763262e5624dfa086a991.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3c78264f9d --- /dev/null +++ b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:49:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_seg-manual.json b/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2star_seg-manual.json rename to derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai03/dwi/sub-mountSinai03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_seg-manual.json deleted file mode 100644 index aaec6b1d78..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:40:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2e40e2a428 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105371--cf985573b7de02ec341dcd47d45c164aad5ddf0209ec5e9c832009a6d645a1b2.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.nii.gz deleted file mode 100644 index dbf2802b21..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14919--855bc167058524cbf647c1a22d613f0c1356d7b1b7a08b81c0cdb52683e1bf57.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_seg-manual.json deleted file mode 100644 index 12f1803518..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 15:55:50" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8b7813c8a7 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50628--8d5a4927345476094969b773546512cb222554f6f5d7ce8abe51c87f609476a4.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b54d1d6b14..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:16:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 816ed124a7..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3444--5bb02f2286fbdfcafcb530881cd4391a5ed82e84f7aeaa70956a03ac761a2203.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1259841af0 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:16:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34403a8bee --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13859--9e7b81565abb7d308d2a15caafb0ceea8878ced403091a590ab58d2e37b4fa63.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7ab8e8a85c --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--8af8eaec1ba029c3d7ead1860d664e5d31469d6f8de3a0de0d335ed08f7b3d0a.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8bf43974fe..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 15:58:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e6413a08a6..0000000000 --- a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3365--3e9710a8b3de8ce74b38f3842c069dde84d4e728918d7d4817b1f2d10bb75b06.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0dde6f069d --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 15:58:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b4bb0b6ee --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13832--f9f69c1aa18e8565e353dc694754010a13c6a36857fe9475a8ed338a21029d12.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..28358ffc05 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:40:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..65faa46eec --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14940--5233ea34ad00d14430cd5aa65b1a62600a123b1ee20d460399ae65e53eb32adf.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1ac8914244 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 15:55:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_T2w_seg-manual.json rename to derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..20d3cb87e8 --- /dev/null +++ b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2188--8dbd6f02eb59e7b49d44b1e581ca0b92804f2f9b1e57270fe4e82dbd0ed63f01.nii.gz diff --git a/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_seg-manual.json deleted file mode 100644 index 4567480caa..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:41:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2d6166fecd --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--e7de8643dbc966a23fbef393d8281c3e855c6a00683119c839371997ab0e6d6c.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.nii.gz deleted file mode 100644 index 48f73a6944..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15018--2f23e4989b47e6287fa15b6d85c6bb4dee17d26f11b526334693bb787a7984c7.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0ab311119a --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--e48bd97a41d370d56b1e2c6c0d78417deddb561fc8c1be328094830f96c932e4.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 44fc575db4..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:01:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6b86e80890..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3367--597e9d47100ba49b5bc57bbd7266bdacc51eb0aa6b3555a1a7fb41f603400ba2.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0f7b741571 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:01:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36e4eaf20c --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13792--e5a3eea74642beae21bdb5a3632d769cf41d08050bf078e2f8b18caab505942e.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6881776832 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--ce89cf30b953440a6089ac3dedfe0c4977c45a017c2bef8d09c23d4c40a6ca25.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 76e02726ba..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 15:59:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9e5c7f25ae..0000000000 --- a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3358--871d4edd0eca1d28bdd6b5cc616d4555e89f8f2094f5befe9833af6dd54808eb.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a5b80b4020 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 15:59:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f47ba497ab --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13816--7183de5bd24de7fb2517a90a17d01fc368a12cd358071948afda488f439625d4.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ea2967cf3c --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:41:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d236a3d3b8 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15039--3edc9316614d836688173ba18de07a3557cd8595372e18de004f14b6ac1c63d8.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..41fa3d7ed5 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..491f1a2dce --- /dev/null +++ b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2199--680fa67ca03630de4528f587e55840ba0355d7f664106e259440f251609ac76f.nii.gz diff --git a/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_seg-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_seg-manual.json deleted file mode 100644 index cceb11baab..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:44:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a2f47ddfe9 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--2c0b5de1152f2135227947498402a7057d36fed5c8d59a8a6991ff0872f461b6.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.nii.gz deleted file mode 100644 index 95a5fbffb4..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14894--d7aab70aa9369c478b84db3cbdfb389ee1a9e5540c31e89feb925b517808db90.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_labels-disc-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_seg-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_seg-manual.json deleted file mode 100644 index c043ceb998..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 15:56:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f31b76148 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--44c66f838b048a7cebdab806832b3025c8a4d2bca26fa0ccfbc2d13d5fb56869.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6381e289af..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:02:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e5237d4336..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3412--771297e447b546c951a5e6e52b955a368082882ed119269ff37d5fe7137f33ae.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1714eac53c --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:02:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3bc1f4b149 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13891--5116645ee3e9cedcd549898f6aeb7e42e944653235a173d57db3d496dbfba036.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b46a034fb2 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--7b22e76ade8581959f4133e18034a724752f8c4d2c3525a7785a644cf18e1d41.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6dfe5ec076..0000000000 --- a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7240--87316fba704172ed55d1876a1149face319b07ed8528005ae573215e1a4465f1.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4668b1db03 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..408219cd53 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7209--7629c6c25e54a1793a5fdacee2800853403e6433faea033fced43d5ebe0f9185.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2defc4503d --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:44:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..622e35ef3c --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14915--40cda87792ac46dc126a4d92d6bce57444ac3c2e8458bbf431a4b37ef9cabfcf.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..2d43a61f91 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 15:56:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..119393ecfa --- /dev/null +++ b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2181--d46db514b09e74958c7b2f71eb21cfa63b43a6c6d0ffa8fe9f072ede2684f5fc.nii.gz diff --git a/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_seg-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_seg-manual.json deleted file mode 100644 index e87999951f..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:48:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9c8dc18a42 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105364--5899329a7b3723196c9d16b8287be289363d38c4520d04f29d0643ade2c8d26b.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.nii.gz deleted file mode 100644 index ae460c3d22..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14844--c04e066207b68c28d2e07f6353e988993efeed013cedc4b3e912d6f90f462ec5.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_seg-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b74afaa236 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--f2b7c2347658af7a32decd2df745f78fd37bc6aefb4f532fa55e5a14b32c16ab.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5f06e27960..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7319--bafd3f6aada4c6fa6e2a132fd3c0bf1cc4281c074fe231af21596b00f0984328.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4668b1db03 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b6e4e2a6be --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7281--b4a9dab3d50ece7d547c84c14f795632966c696a9400e29f8f50f8bb5b5ad486.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b24363ed2d --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--4c0381f149a41d3277ab9ce17fa2087c841d6061923341966243597699564f8f.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 116f00a3e8..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:04:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e316e07c93..0000000000 --- a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3370--9f7edb06931d2d865a81192528882b9893715ee9353d2b7b05fe42c60e90b398.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..58152f5ac5 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:04:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..063be8eb83 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13749--061b1288c96f6bc61e51e348a09b3beb2a8e4039077f85beda01c8c56e726e77.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c365ba19cd --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:48:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6fc99f0793 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cee0fab2c3 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14865--d19d3400a0d8ae3d323a361dd26cbfbe330fcd048afa2586520572872676397f.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..41fa3d7ed5 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mountSinai03/anat/sub-mountSinai03_T2star_seg-manual.json rename to derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0093220a83 --- /dev/null +++ b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--904570077312120622f60f6bf74057694a3e3c23f8d7065ad47f1f930197aac8.nii.gz diff --git a/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 74ee126a5c..0000000000 --- a/derivatives/labels/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_seg-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_seg-manual.json deleted file mode 100644 index 5ec4ec9974..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:47:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..babf687cfb --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--b405428e8f484e7573786f804b758d75ea61f0c6c67874176ceecddd399ece17.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_seg-manual.nii.gz deleted file mode 100644 index 052ae947da..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14777--bd4b5324fe060f0ba667df4d151ff39e5cdea2ea9bef7b8764820f0782571b01.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_seg-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_seg-manual.json deleted file mode 100644 index 8e36e6de69..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:00:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..119b4f0dcd --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--d4ff086c72300ac9e6128dcd203f4ec4f56408556ef7e693a6b133b5b0aaae84.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 318f5e874c..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:08:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 20d5b32984..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3472--7b08238bc1f8a041c8aa2f70d5cba91764e40062aae932c6c61b927e80501f5c.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fb85bad314 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:08:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d13ab575c4 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14044--508f038ac304631faf971faa529781e3e5177721ac2fc6d66d42f77e0f614100.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5c42b21fa6 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50629--9e25cb8e8974e62612520376085f1d325523d49a044f17e43fb216b00ef92929.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bff5827123..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:05:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 79ef28d44b..0000000000 --- a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3375--55affc9d457c79da0eb36d95413c50f5e7e39f530389f2d5f92c13d32a8e355c.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..337d4e5e1a --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:05:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e7f10b180 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13842--00995bb32172d9698aab2c600acf5f765aab51d1cc5f225ab25879ba4fd2591d.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b492ef9a39 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:47:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..67e412dc79 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14798--1a99010649fdeee94db169c83e843fda255d81ff19ea2cbaf4a7f5c57c19e556.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a76a4b3b5e --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:00:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs02/anat/sub-mpicbs02_T2star_seg-manual.json rename to derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..04e7e2cf82 --- /dev/null +++ b/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2082--8e3ed25ca3324eb897ad217846393149eed29eef5e1ae4ce44d17f6a1f048ab7.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_seg-manual.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_seg-manual.json deleted file mode 100644 index de515cf7b7..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:51:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b64f80f92c --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105354--01e2d832a5a3633d7b5ffe178da2804e87e1f4a8d9e9e8bbf67dffe03fa031ac.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_seg-manual.nii.gz deleted file mode 100644 index 2f7aa44273..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15110--dc868db3a68be89e6bac87e339453accbd23672fcab2f79f2c78f15190ab9c15.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_seg-manual.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_seg-manual.json deleted file mode 100644 index b8429d771a..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:07:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..575e6434e8 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--953763673d3b1fc488a3acff657368446b23b5bc4c591689724493462e30a75a.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3850b610c1..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7454--a4c989a09841c3f61266217259d358ed39e4bb0d322b0efb66375beac09724e3.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a02a7f600b --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7458--f42ff8b459f28bdc9d29a949102afec6530b091cb9afe5a3c8256e4f56b766ad.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3398a5d9df --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50595--792ddc3bdae6c80c954234aed50b55275e65509f3c85a503f3b97ea88a3b1719.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7c35570f25..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:09:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 48d957b100..0000000000 --- a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3372--e6bf81d5cf33e09769638af80f0946cf4527cad63ff1d1dbaa0b0805248cacb9.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..326c3ee4c8 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:09:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..08e855216d --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13846--44c5161fbc4f869a3eb9b011754f7196ddb97735502b11c43502eeb86e2d1b52.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..bc906da4ba --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:51:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e0332378c --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15131--8bd06781201118ddabf03d9edead54d0d240411ee05e1982be371ec98bb66f1d.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f647365fb2 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:07:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fec6e95996 --- /dev/null +++ b/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T1w_seg-manual.json deleted file mode 100644 index 5e0af2c534..0000000000 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:53:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_label-discs_desc-warp_dlabel.nii.gz 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100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_seg-manual.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_seg-manual.json deleted file mode 100644 index 1ea94fdeda..0000000000 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d51a0a3fae --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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"2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d8ccbb2231 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7286--1472da84a2ef537d8de3f212635e34439aef2ee5de4e02b44c81949982e6bceb.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e2eec581c4 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50564--3ade37a41183df874070f6b7a61cbb630c3e644df77a6061bc056b7499e0e877.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a122f36e87..0000000000 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:08:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 61987318ca..0000000000 --- a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3337--730531c3fcc6541bdd06b44d914341ce5b0400bc8c52dbfdba9a2ac71b2bee7a.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9a94cf82ac --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:08:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50e74932d3 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13722--856536d6b01523db4690eb91fdfbfa9fa02b99d4d83c6b7105d6f02fbccd89f4.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9db0f04a6e --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:53:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee734af4a1 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14789--706f53f1ffdc86ab0ece2d669f8f39b533b1945c96ed347a0844f57e14f2718f.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6d5efeb0aa --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_T2star_seg-manual.json rename to derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2df182254a --- /dev/null +++ b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2085--a85bc2039c7cb5cd9fd7df41613871f35fc849db37ec59f100ed313f799b0bc9.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_seg-manual.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_seg-manual.json deleted file mode 100644 index d0d61ca79d..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morin-lupien", - "Date": "2021-06-21 16:54:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..18fd397fe1 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--0f54f58a5599b52eb0e2051d237ea2f1649802c2e737b84f1f6e1d3467a1aff4.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.json deleted file mode 100644 index b2bb13a43d..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:14:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.nii.gz deleted file mode 100644 index b21971aa02..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 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b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8328deec11 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--7fa0704e4ab7c16b37c5cdecf24735f0fcee18a4bc0fda0ad59883c3ab2b77ff.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b3809bd27e..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7266--a5b966aac6381b488731985d8464466d59f2339c2943f4dc9e85238e9f655164.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..582b52389d --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7282--54967fb7d0b99f2a1052326b003d14057698de1ad7c12b73bf4e5675caf2fcf5.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0fec8e1a71 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--d43846574c49a1e1ef9f2b3996447863c80a36298fda19343ba32f6182d38019.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d9800f866d..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:10:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1a8d00122c..0000000000 --- a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3332--65d402c030712f88ad26c184b427d64f8ec4f386ab0a787a6b5d8e852073fff9.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7c26b37000 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:10:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1263cf94d5 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13725--03444ee6f32ea312e74e5d09dc8765dd1fe031ebeef30c41b039611963ba6e32.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..14914ce777 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morin-lupien", + "Date": "2021-06-21 16:54:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5818b1259c --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:14:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..92739d4faa --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28371--77227ca0745c4b475a56db193f924b68e38c68c497ac29ad703e656ce2a52886.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b71b6b5acc --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c44183901 --- /dev/null +++ b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2081--ebe53d5260d30f0dd44e82a6acaa491dabf415521b96690a4f8eaab761336b56.nii.gz diff --git a/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_seg-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_seg-manual.json deleted file mode 100644 index 4edd10a792..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:13:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9e4650577e --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--89e1aebf01e727ef9ba68b35a86aeb8afda4af54fcecd83d74c6c2887d3a3aa6.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.nii.gz deleted file mode 100644 index ee9e5ec102..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15051--7e3b028009ee5d321b64f7a4f976998afaa10d0f248abd18bcc51bc0e7e3344a.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_labels-disc-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_seg-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_seg-manual.json deleted file mode 100644 index a5cfd91484..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:23:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9c11ba8934 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--cdf50f91bc723144d67c6fc71e3314cb7d282f3184521e65540c44c681a251ef.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5c55458745..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7345--d3576408cff5a4060c98b4cc3e20115189aa551e160446ab37f46f3d6db57ded.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8dfae8eb35 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7336--ccdfda68e5b76c1b8f298d92f9fca4147b34426f6813b3efb63da5dee041df5f.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..18f0192401 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--c4d7664e56e1f6a7c8ab0f4845786085a58464256436a36725e8abf2f4eca4de.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d655844851..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:21:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index de0517721d..0000000000 --- a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3362--9f6d2cb8cf892a55758a7bf08617ab4d48a3aaf4ad830ae5110c612e9109508a.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..80fad709f6 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:21:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..981b453c42 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13767--843cb03d6dbffd8d137b7f013ca8fc44789ac5d58fef8cc18f970367dd0e8a2a.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..94468380ee --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:13:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0eb34cedf --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15072--f9af0092e06b6ebe27ca8cd1679e27b0d866e0d94f8498948b12e973cbeba5b9.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..81ed84a926 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:23:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..adf31c3497 --- /dev/null +++ b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--9bea25f5e840befde6bf7d976f19d00feb0e6029f09a0d671034c67c0ce490ba.nii.gz diff --git a/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_seg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_seg-manual.json deleted file mode 100644 index b666aaf591..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:25:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.json deleted file mode 100644 index c60d60a3aa..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 3314ab5a39..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55270--0ff5b698dd4151b1ca8cb06f2e1b3d934323c306f67d1cf503b5dfcdbef07b96.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b7ec44920 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53889--ff65a0b6ebc7eca70bf817600e5912de64974789c039c7c58c1e804379930a79.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.nii.gz deleted file mode 100644 index 16f0ba3e1f..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8195--5b2b0b2eea2825acd948d80a693dabe681c4459aa3c838a59c0e7ed9a0754c40.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_seg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_seg-manual.json deleted file mode 100644 index 048837c677..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:49:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2583583a9a --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--5a47b7ff7a26362034dee35b43e8331c2ea296b4ebe0ddd2780e2fa82d468a62.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c31ed12f35..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7451--f1a086cf0d836ca25a67e684b9270baff7c6e71a7aa0bb807ca2800eaee58e9f.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..100cd1d635 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7421--ee40dcfcd28326ef9aedb0a6dff21383e6ccf7b1b97469d9fef80b629782117a.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c51ecde249 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--57788d3d6320069e8addfc4dbcc70501035b9dafdf025f3f402f84cc33cf2759.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c97aaffcef..0000000000 --- a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7308--8d21c12523e23585557777895654452e5c7408415ac8a719bdb774b56f9f7bf0.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c263485639 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7260--9a9ac149edea9aa175d989be5a7f5ce3bd6c9de0d58f104c9ae66bddc1a5be95.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..db298318e0 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:25:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..c7eaff9285 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..9d1b24608c --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55287--236dd744eacc590ca5b5b2d81a08b299aad8cba29b7fd772441a0941846ddb52.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f1103ec46 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8216--350e2d05b76b2cc8844dcb89fc8a9e037ce3fb52233fa93bd38c13177873f47b.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0e60da162a --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:49:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/anat/sub-nottwil01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..83fbf0c5d8 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s136286--392398d5750be21e4f7bd13b759285da843b248c6cf388ddedb8640014873655.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_seg-manual.json b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_T2star_seg-manual.json rename to derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0ddcfbd157 --- /dev/null +++ b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2433--fd5dc3b0ce6a21a5a8c69b677372b27544ca9f50421cd86662fd183476a39102.nii.gz diff --git a/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_seg-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_seg-manual.json deleted file mode 100644 index e599fc283e..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:25:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..99cd518a80 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53894--4d6da8bf3ece5018d4379f98e7d6f93b2887d66b3da888394a8cbf4c9e6a8377.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.nii.gz deleted file mode 100644 index f7a723e735..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8247--177bf6f59843acc26a92202fde403bb06ab4e5e31fbc8c218b9dbe5c0511103c.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_seg-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f4313b6ea --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--2010636918664dfd69c68f97be9e535a302aaf70ddd0aa2476163fdfee3fb3c3.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f6ac1cf77e..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:34:50" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b564a85b3c..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3490--b889a44f379df231a0f38ac99f42d70e0cb8c3e9cc3d4e592df84ccacfad2836.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e9a51f8260 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:34:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2f7edd409d --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14037--84783c44d14356428913c427f11d27dbdadbfbbf14da171efe9f8eb702408128.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f3614fb3f3 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--d380ac8dcf869f0a1abe83d440d03b9ef71d0743d3190142bbd2994be00fb7a2.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f6ed7c7057..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:33:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fd0c779e4b..0000000000 --- a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3433--fd78df0283a4c76b8412290b54180f4d6714a47177778c611e479488c6c791a3.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a40f367626 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:33:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..75c7c25156 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13949--e93f4cf4ac10d69ad6d78bad31caccb778a98da4d1855e6216070c44e88cf8d3.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ca22b74729 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:25:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..719db4bca0 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8268--b8c0a5384f3395481740b17f890e2e0c7aed1ba429eb9ef9e93345f3940780ec.nii.gz diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b71b6b5acc --- /dev/null +++ b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil02/anat/sub-nottwil02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..20aaf75290 --- /dev/null +++ b/derivatives/labels/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2429--96bcf569e7da87c1331a5edf14cb99cbf7e1ce2090f287a713b9eef5bd61eca7.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_seg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_seg-manual.json deleted file mode 100644 index 0ef6be4341..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:11:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.json deleted file mode 100644 index 01859567c7..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.nii.gz deleted file mode 100644 index a73eb593e5..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55384--915ef38dd77133175f467f269467ecd37d00e00994b65b4a2d2fa10f09cee265.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..82b3084e71 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53887--24d6cd8a51eb2b164082ea4e94b058aa03ea6e52bb648d259fc9adf35e2f48a8.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.nii.gz deleted file mode 100644 index 476ad8777d..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8178--b313af1ee61ab1532bbdd4828f9385daf844c55b72b8fa5f78c1283a470f0be1.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_seg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_seg-manual.json deleted file mode 100644 index 9366f2ecdf..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:28:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ed84709d97 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--0a8f4dd263a6bd195cf271683ad8551a7968ea37a09fa637bc5eb4a7b465751c.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7f051c45f0..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7441--08e780b204166097937a8eda949e01ecfe13d14e462c00e53a11b68aac5fcf26.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..40c45b9ace --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7408--774c2b5b5d551e253e9ffc2f16a7e6035abc29c8e779378147f720c464fb42ee.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..80f6a6ae0d --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--80d41ce8f0c73e1fbed90f527cf2a5ca888376e9443ac95e8769963579e89885.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a8702f70cc..0000000000 --- a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7407--44d8d11238b2ddc5a31a26cb7fb68f44c289e5407c7da23b2e57a1910db20dcf.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d480be5ed9 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..84d9781476 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7349--8ebb09c72e69862971de7eaf501144e8a45c206e52fb784ea8ca540c93e4911f.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7053836b70 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:11:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..e339e198ac --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..da1cb272cd --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55401--a5be2a69c75c51fe12c5720d04a21901f95aae7032a47b32d47b8c9a3369ab53.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8ac5899372 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5d74e350be --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8199--6cf2f84cd5b05c0d2e983b3b67d28e9b2eec600763da9317ccdcad42baf8e3bf.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..03bc8cecd6 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:28:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/anat/sub-nottwil03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..12f1c1a189 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s139693--3e227e0cf6c18bc811f74b92bd2c6695bf771fda7cb7f2e06c66fa2defbbe7ab.nii.gz diff --git a/derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..48bcfb753c --- /dev/null +++ b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2424--8ad55b7751179357470aca108e515ed54544cb8c931d256a67acfae52652862f.nii.gz diff --git a/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 9d452f22ce..0000000000 --- a/derivatives/labels/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_seg-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_seg-manual.json deleted file mode 100644 index 57523338b7..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:12:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1ff69d3098 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53882--bfc718ee375eb5cedc5375c82cf3272761979585b63144e6508dcb042b48cf1d.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_seg-manual.nii.gz deleted file mode 100644 index ffce699c79..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8431--fa02169d11c44ccbc78484224c80d4b4a716a5a275645d66ab535eaecb53fa2f.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_seg-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_seg-manual.json deleted file mode 100644 index 7e93cfface..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:49:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2323305822 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--36fd2030890697221ef243a3059b1bc5f8e9a2ed54f6b6df6c65c8b5d3e8ce81.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 235520901f..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:48:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8bbd502177..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3538--06b3ca81996297da7a9a658c6a508788dc121bd8c8863b0bc504231359c54d09.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1ecff82942 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:48:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8843cedfcd --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14222--0a66a6b89194fca51d058b6313db3057ce1d53c3d88c3b82bc64dd11baa89504.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1696e21aba --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--0fb4f4adf658df8879b22f96ba66b501e9b1e9debf5e51ad551aea308402cfe1.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8d12a41495..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:23:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b94c8e7a67..0000000000 --- a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3450--5df96563f1dc3bfa40140caa0ef5f15d439b94ca45d8aa46efae3d35b48bf835.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b04a2e1d36 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:23:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c131daa5a --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13963--4c9aeddbab3a7cc20bad4788b16c4a53018c59fcae9e04fcb1e0f8007ad38a3c.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c459431b00 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:12:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..600bfced8c --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8452--f4a98f484db50acec22c355758489432fa1dd83bd29fd60a5338e5c4e57399ef.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9e38262f0e --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:49:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..ee16393b1e --- /dev/null +++ b/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s133231--82020c8113407e5d99f03586182df7748e1d2ec60ead1a6dd4084b1e8d6df561.nii.gz diff --git a/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ce6a6ac684 --- /dev/null +++ b/derivatives/labels/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2412--c03a723b4475adf545db0ae742e6f9fbf5b437c4d6f079943ba5741eac772eb7.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_seg-manual.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_seg-manual.json deleted file mode 100644 index b4f8d87e46..0000000000 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:57:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d4af4f604a --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53880--0eca75376c8dd63e8c253e874bf791342f978c3630c4ba0e9b8002a30d951682.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_seg-manual.nii.gz deleted file mode 100644 index c36cb66898..0000000000 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8277--69aea411f2ed69c0349d63954915e7aea9fb6ea3c5786b5f758997220dce3a57.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e7ea509407 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--a69ecb65605f468a2ace288c4ed1d8347ee64d1c4ac6985d99c2e7f664ebdf6a.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0a044d69d2..0000000000 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7462--66b1c4d5f8c6ced71001574be28a2341bf25df0cafb559661ec223be74a31cfd.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f34500ba0e --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7427--6504cfafa03c65deebf110c05c9c0c954e755e93e3e4e0d3bb4c79f6b4e2f22a.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..72fbb8e6b8 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--001057f5fbc1f55f30149bb7882dbad31d79eaa5e1859a2b61c7cb1d1668ac63.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index cb28be9e06..0000000000 --- a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7330--25bf3de066502e61f981a39bf8aebfc2880199f874f7a53e8d0198db71fe63d1.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0bb9cc1829 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7332--ee254ae3419386875d5fa274370edf788a5553ab9e6f9411a5e671b7ebd2fb94.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..485de4bbf0 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:57:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4383362e1 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8298--683e14de8971ff9aa5e8b1054f0387b7a8447128e28feb99e1735a47e0d7842d.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8c2d9da1a2 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0363198962 --- /dev/null +++ b/derivatives/labels/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2415--605f53387176f939f9ab99822d266ce0e8b3e0a66706c842be41fb54f46ae815.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_labels-disc-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_seg-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_seg-manual.json deleted file mode 100644 index 5f19f68373..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:16:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9ebd669c13 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53873--4c870239c7ae13230f998f8574ea60face234ca6a26832a6ea7606c85e3c9630.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.nii.gz deleted file mode 100644 index d4fc267093..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8382--d26b03de7cf02ed4936f8f0afb301459ad71b2e74b06d0828e5eb1b19a89a89a.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_labels-disc-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_seg-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1c5f5ac77d --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--711f08a64b665bae4222b96eb533227f4e6b89b6d3052b89ea67b8452ddc4317.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index fb07c989c8..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7496--1c7720060d1f6c3c1c27e7b0427afd6cc7a1027643b37d38a212f857accdea2e.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ffaad0ae20 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7460--d2e995f0ec296cab554265beaef8e9686321299652f08e8c90e48f3366660144.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f57065cfd2 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--2dde1a684c0d87436d8466690e0167eac75fdee4506373cd977642856bad043d.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index cf46467c5d..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:35:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b41fb63c11..0000000000 --- a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3451--36677f65d39d74e091ef11f188538f4e67b20f15f31d03d1c6b4078d6efde8e3.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..46bdd33118 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:35:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..572da2d611 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13982--9bd6dd2970a6edaf2c211d27eb8c4de4a317fe5aef4f2210676233eff98c63b3.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..4c43c5e872 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:16:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81bad343dc --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8403--cc4562ddc1676c712ff90234e5822405465d6e1495f94ea7f17218249566ced6.nii.gz diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8c2d9da1a2 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil06/anat/sub-nottwil06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_seg-manual.json b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil04/anat/sub-nottwil04_T2star_seg-manual.json rename to derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3851062289 --- /dev/null +++ b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2412--eea61faf7d2a509e68085ac8db6872f3b142ccc4be2d592671cfc5663f966f7a.nii.gz diff --git a/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_seg-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_seg-manual.json deleted file mode 100644 index fd08930da6..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:41:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ff38fa2fa7 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105344--f2fe61f012e1569ea462ecf8f2610767da39c631361a56776e6a7195dd1c93a7.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.nii.gz deleted file mode 100644 index 554db451c3..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14771--5461f8cf0043497b4dcfef111d93e7b7c19f8baab6b6cfa74b67fe4177a07c04.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_seg-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_seg-manual.json deleted file mode 100644 index d1db2fa475..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:39:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8db08f8fa2 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--8c444315e9aa2d17f8a1eec2cd29455cb893e957dc069dbd338930302bd8896a.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 39263833a3..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7287--ae8b43489019b6750eaa5c64050435b6cdba3aad92ef2913e58e7f8d0e010d63.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f33d6615ee --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7283--420aeb5eac7ff876dc88c2327e14f3869f5e1cdfa3a95a609740722e923ada9e.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..14a3bd47e7 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--8c6eaa19279617f41ddc549758a12925ed9f29d66467a7bb634aae46507e44b1.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3f294eae64..0000000000 --- a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7163--bd58ba03211f6133ec25b8af18a68047f5298cf05083b76754a617f96d692a12.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff537b4c6d --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7160--39c249c73a3ffa62a2912e87c13268e5886e4c975d54d5fbb30c6ffdc45282f9.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e2ab9ae48f --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:41:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..552e1289fb --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14792--ff5a168ba672ce9d81e2034da3e48f017937137f07ee29d66f31bbec640fd6db.nii.gz diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b7123563c7 --- /dev/null +++ b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:39:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu01/anat/sub-nwu01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_seg-manual.json b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2star_seg-manual.json rename to derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b4fe1b117 --- /dev/null +++ b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--2289565b73984bd4e2648f21019e73034129a455ce2dffd7cc5d2b9c37321d86.nii.gz diff --git a/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_seg-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_seg-manual.json deleted file mode 100644 index c39c6b55c9..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:11:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..64d5a4da3d --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105349--67445123c3ba5c7a9ba0f237c7ffe342ec789f7d5f46461e6c95012f287002e8.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.nii.gz deleted file mode 100644 index 903fb03881..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14648--dcfc86c0e774c1d0f253c5257ab29b7a8b23333816ac695e1ed11f764c3d7c18.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_seg-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_seg-manual.json deleted file mode 100644 index b13e7b5a30..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:22:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..81a8293ffe --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--495e24e80a68ad22d5167e5b14d155fbcf16dfcb86152bd2f578f8a7261bb8ed.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index aaa11158b6..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7247--95bffb3edb220be39b875e53dbe2c4a0bd79167d8c2c1f7d18dbb8e559944293.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a870393f9f --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7253--9b3cb005b736c2203e91d0a97b95e0552d016b9abeb9f8144a5809ebaeb6b755.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c26cb81606 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--29a365384949cb788d7294fd02e07c97dabe9e95e35d99dd3e0c57dc93e4daf1.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f8de1a8885..0000000000 --- a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7086--b1b50531fa1ed91b6d6c5c8f8e87a5fd104395aff6c66071e5f350baecaa722d.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e99c6bd3a6 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fa77843ec5 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7097--7c083fb730f7154baea29e47e7affb4c2e6807b06c6c14856cdfc3594793fba8.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b34a859d33 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:11:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a852652c4 --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14669--8c04a30f320783b545c15534935fe2e61d5b693d58590753fa24daabe1a95e2c.nii.gz diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..56d6a6b14c --- /dev/null +++ b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:22:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu02/anat/sub-nwu02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_seg-manual.json b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_T2w_seg-manual.json rename to derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9bf101871c --- /dev/null +++ b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2092--8af166aafabcffbceb3803e12a38cfe1585242dac8cfb1560e0167e56085fc68.nii.gz diff --git a/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_seg-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_seg-manual.json deleted file mode 100644 index f218eb070c..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier Morinlupien", - "Date": "2021-06-23 16:12:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d7d7df51b1 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--5db2e99ec9eff4f71c39b33f5950bc9c91dab328864af30fe64e94cd57cc123d.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.nii.gz deleted file mode 100644 index 4151d369df..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14719--297323603b9a2f7b6116bedc2c452baa2bc4b2bb4de8064fc3f931640d5f8c3a.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_seg-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_seg-manual.json deleted file mode 100644 index 39217d962e..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:25:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..77b664fe35 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50604--e1aed0167303b4befd5ebfb7d34cba110ffdb0f6497dcafedb6202f684239023.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8b4c1297ab..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7276--b1861261022e8ede64da2b6bce93bc98ef1fdecc3a368c2d7f1d7a2170d46bfc.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d39b2c8587 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7274--975aefdafc63f8f05335da55528b7be7ab542332411658e30f7d63afeba79bee.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f3e06a8d4 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--92bed85b70d94ee63c67f4e1dad8f59da982a136c3ab51f2b297296ae24e0b6f.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0af67b4a4f..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:17:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d240b168ab..0000000000 --- a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3323--222ebbd3d689f14e3136875fb8c4256480b8b7a8a12be688752754810532dfe2.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..335e88fb9d --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:17:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4df89edfb9 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13716--01f72299ec39bce5bc3bbe50991b21e09d7621a3d8c8f0d6111b14b02c6bc117.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0a6ae8ec35 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier Morinlupien", + "Date": "2021-06-23 16:12:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a086f64d95 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14740--24f52635598a9e651f682b1938fecbb13361ca6220098fb31393f77d3bec6e06.nii.gz diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f16338c4b5 --- /dev/null +++ b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:25:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu03/anat/sub-nwu03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..00fb242fa4 --- /dev/null +++ b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2083--982f65881b3425603070c3c039f8f922ea3cdf5703d115abe3c6fd06e8048cff.nii.gz diff --git a/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_seg-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_seg-manual.json deleted file mode 100644 index 2d81bd1eca..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:19:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a6db713cd1 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105361--ed4970199f58f8539192f5bfdb9f3119687bee7ff0d24a97a86978a9c1425924.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.nii.gz deleted file mode 100644 index 8b41163cbc..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15039--844e03c9c657d557483804728e8976be4624578ca3ae69e1c5efc3559af108bb.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_seg-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_seg-manual.json deleted file mode 100644 index e086eb2744..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:40:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..edd2b3015b --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50589--6a50185116d4557bf73e63d5e7903f91537723fa030a5a1ed0f8237995c69049.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6a9cf2b8aa..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7367--1e321aaac0a6e0a29b4e746b565cfd4f673968f7717996a905d86dda9a540203.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e9456b10a4 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7392--659c12de57729201ca102de951e3d7190edba5d9c9ff659a1dc01f0022fa8693.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0d2b71a331 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50593--cca39ba6af1f59279bc218780d3c9972a41b3a6511157db90bf6565c04a0501d.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index eaf78e4ca4..0000000000 --- a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7195--aac714bd737d03232ff36a26ce00717ce555afcaebb457e15ef9faccb21c3627.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad79df97d1 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7202--de6c6fff4c8e6da67cfd1e76e1d4532ce06bcda9fed8566f9c7b4bd4963c8dac.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f047468487 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:19:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5843aa1aac --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15060--cac0496470404b059b1b787577577bb0fc9eb9a2b2ad35f7f02f86e21344db24.nii.gz diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..cf25de9965 --- /dev/null +++ b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:40:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu04/anat/sub-nwu04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..94493ebfb4 --- /dev/null +++ b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2061--167c9cb9b53adfe8d369a93f8ab91e5d9b3aba06ee9932c96366cabf9cd07a71.nii.gz diff --git a/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_seg-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_seg-manual.json deleted file mode 100644 index d5b3f7c73d..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:21:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ee659e2a97 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105364--f670b0abfa4b2e3186c9fa2db5c2ba056df5dfdd91035697c30e3b23e9ccdc3a.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.nii.gz deleted file mode 100644 index e764fb071c..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14924--6087ed47cc1130a83b9c97a9af4f272e63d0c9845c00cf03fbce80d2c1f85a12.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_seg-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_seg-manual.json deleted file mode 100644 index 6919434f55..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:26:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2123b76fd4 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--5dcd33507b329fa292ec559f3af0513aad20f691633a1faab8344406e9eec0f9.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 8673af9321..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:45:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3ed1f91ffa..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3468--525e93324de6829a818139ccd0172c7b24866bf7565dd16146e46da79c16c220.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1060d325c3 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:45:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5a70a497ed --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13992--f9150ee63b770117ca6efd88df9027d25de9c8e8d99bd9ff34354042123ae16c.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e63f3ff9a9 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50584--9eb90be6da082ea5440d1fdaeb6ff37664e19f70de8c97928a449f59046ffe82.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8b93ee93e3..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fc2612ae1c..0000000000 --- a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7200--bb53c60e5932843964744e9ae36eabeba42bd5d48ff94b41417a41ea27819e38.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a70e325d44 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz 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b/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..7c9e0d08a4 --- /dev/null +++ b/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2star_label-SC_seg.nii.gz 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b/derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu05/anat/sub-nwu05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_seg-manual.nii.gz rename to 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b/derivatives/labels/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2090--e286dc6173d683ac6dae19041426f7e97a80426b19189b56924735785d1e25c6.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_labels-disc-manual.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_seg-manual.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_seg-manual.json deleted file mode 100644 index abfe0c70b3..0000000000 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:14:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..be85b1c10b --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--3464c98fa9c3f3b143b292ba8f1867ba3c26bb83b3606b1c75abc0dd6ef4bc59.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_seg-manual.nii.gz deleted file mode 100644 index fbb9c4c505..0000000000 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14718--151c879881cf7814db56e15529e770c4fee642c4ada513700186bae2dbf4d9f5.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_labels-disc-manual.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_seg-manual.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_seg-manual.json deleted file mode 100644 index b8f8c88fb8..0000000000 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:07:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8deb9cc32b --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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"SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3565202878 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7250--2fbf3e01a37ebf905b77dc80968304444d8981f3f88190aea0a90d1f036abd49.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e00cc895a6 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50594--cc2ef6ac8bf23582ed410803ee6c99567bc7aa9de0393fc612cc36551ea08840.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2f55f1dc87..0000000000 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:36:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c7e3dab3b6..0000000000 --- a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3319--3c796d8a2b8a4dd89f05444b3f3c22e26cec74d45b429b9657520c39ddcd91a8.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5dec99eb16 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..292b89ac40 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13728--e735cb7df3c96ea2e3d01f5756faf57c746a06c7fe1e7a844820420b85b82734.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6928c01316 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:14:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2173ad250 --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14739--40a407f8e6d355fa6c00bcbfab6703913ea521aa6919752798228a344864e2dd.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..54c556e88f --- /dev/null +++ b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:07:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_seg-manual.json b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_T2star_seg-manual.json rename to derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a0ff1784c1 --- /dev/null +++ b/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2073--a147775d2d968b54b42019e02287034bbfd391fdb2d1b153e2fe76f5afdb8b6d.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_seg-manual.json deleted file mode 100644 index 843b6a68ad..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:50:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2star_seg-manual.nii.gz deleted file mode 100644 index af0268541e..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14935--3514993166cba67dd61d859c2f0d644f42080c58fadb165269d8e70daaf4d62d.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_seg-manual.json deleted file mode 100644 index 6e90ad5708..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:45:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a166a78cc9..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:08:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 39ee0733d1..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3408--d39ac477aff3a042c6a09ff78600c1ac950ec9120f0c1720aefe64058c6398e2.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2453ab8160 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:08:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bb16145a0d --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13830--eb8493e9b798b5a5f78e3968561cf829ce648a6936271c62a9894ea1cc674c3b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index fee362d017..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:52:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 50ebbd3acb..0000000000 --- a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3371--f84f1886869865f39c613b85ffdae7c818f66ef58838264fa80e962e32f4c581.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c4e9f4241 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:52:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2f813a403 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13796--aa8f2c30d7a7298c4ec944f6b00f3dee8c1e87dc16005f37810082f772c1e0a9.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..69569453b8 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-05 17:50:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2c989ce38 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14956--1f9cdcdf89da9705344c027ed31dd2cf325ef0a1df06bb17d57037a8b5b800e8.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..65089db7ea --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:45:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib01/dwi/sub-oxfordFmrib01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_seg-manual.json deleted file mode 100644 index 5cd9b62ecc..0000000000 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:22:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e52a943391 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105313--98dea374ab9944d2929a68119790ca713f0cce45870f547995399db28faf27c0.nii.gz diff --git 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b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_seg-manual.json deleted file mode 100644 index a3bd4fbae3..0000000000 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:43:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..25bb59d81c --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50559--4dfe5e18763fe150ddadfe0e5e576667f7603e9f52dc6b7c3f0d24a19ee7ee02.nii.gz diff --git 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..597ea64965 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7278--bdc34819ec5d5c2ff15583489ca1a5c5a86068ac0b094fd2db8bb1f8ea670f74.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..df9558011d --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50568--9ba38ff44fe43f61025a2d6221f158e61fcd52d39e2a0a0b22b0d74743fa162a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index af3a9e0fda..0000000000 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 17:57:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 071e1ec653..0000000000 --- a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3357--e1687bac9082baf8ac8f4ece260d6ba73d631d3e666728e059012dd4889cef08.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc604a7b77 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14907--833b74507625d5d8025be094e1273c5458a80b2ec41be5d0fe477d9931280af4.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a359cb6693 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:43:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b5c9a1d15a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2049--16341e02310993f501660d20dc25edd4d409bf662e4b52dead1467806c21b515.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_seg-manual.json deleted file mode 100644 index bafb2b5134..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:20:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1bce25b480 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105352--b26a836d998b30a531ae7696ae6707170388889859f815d8791c3b8d4d3cfdf7.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.nii.gz deleted file mode 100644 index cfe492ceef..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14894--e06c08afa0dd8c542741c94a664db521c49aa98688313b88782020a43c80c51e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_seg-manual.json deleted file mode 100644 index ce122a3694..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier morinlupien", - "Date": "2021-06-28 10:48:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0f1a55314a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s7267--9fbbcd49e220130884394f8c1b3b9c989fd4b2f75c15ea1cdde5dc4f4303e387.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2da3856354 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--86069296759d35e05f660d413281c66b52a0041a6bf81c493a84dfdbe7a997b5.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2b77628f6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50598--882b60e5dce7a5a0c329e2ef299ea23c55625cf63ca98556164778d0c182e712.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6e062bf1ca..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7193--3abedb84e399b27e01bc46aba3e6a43b4c817a1b378d50dd428bb683c54dd415.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a647b980e3 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7165--1f9ff5551b755c3a7ddef56ea853295f7f7e29d857020200d5bcb94710d2e7d1.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6afa8be718 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:20:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..14362c2a88 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14915--75de07b3260931ab409a7cd81eb84f57b69f6270b553ce5250f957673eed35f1.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e35afe2179 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier morinlupien", + "Date": "2021-06-28 10:48:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f3576fdee8 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2083--afbb5518e847ea7c845df59b8602c5e05ab81f5a9e0c35017ed963e527842c43.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_seg-manual.json deleted file mode 100644 index 00ad0540e1..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:27:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.nii.gz deleted file mode 100644 index f40d7aa857..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14793--f53f41340c9407bee79332702751d5615c6d1e92dd7809b243e07292e417fbc9.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_seg-manual.json deleted file mode 100644 index 075efac036..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:34:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1f6aa1e62b..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:49:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 668a74030a..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3393--f7c6a4622cf9c6e5be79487f35434a15ecc7a87e03a5113b1292d06d080b0f7d.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..70d0072d2b --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:49:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bbda4ebb3b --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13716--2ab12130d4a9dc4309dd12d8c6dd1f7a9937c2c0d0f5f83f03c5e3abf277f76d.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 326734aa1c..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7117--462d075a72c436cc5482215500bbf1c20bfeccd21faf8ce40d414d439f5cedc2.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a317faaca9 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7067--9b13c58cb2b4b5786b2e2a804421b54a50e99cacbcbeb541cb61ffb7e0afca39.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9f513b3695 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:27:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d9dc2cdc0a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14814--fbe47e93a1a7ef35faab5f7c4c96f8d6b569bede3b18c2c257ec67c3fdf9f314.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8bebca07c0 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:34:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib01/anat/sub-oxfordFmrib01_T2star_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_seg-manual.json deleted file mode 100644 index 4d9dbbe6d6..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:31:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8b823d613e --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105373--be8e7eb78edcab026cf6d40321242ccb4bbce07aa16bf59f877119ce4909423e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.nii.gz deleted file mode 100644 index ab47a1a37a..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14904--c1936d18cf09345972ac443fa5165887e37143b0dc87e3ae3ca688a9fb09c35a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_seg-manual.json deleted file mode 100644 index e45f39ebc9..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:39:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7f6a3653ef --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--e45dd7d286c4a9bcee5e1305f04d83e393de26bc11ef185f5165cdda139ca83e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9718dd2137..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7427--edaa3b39bac329f47796a5beeed71194582932c5bd043f36a041602acdc8acd0.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2733b4095 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7374--b997e6b0ebb55c0471e23f61b6cdb7b5e8e0e6e2030567eaac6e20d2bdb1bc6b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..041b410f21 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--37a1702bd53eefd08ddf960c5e0bfcab2db8d7c0e86d9454667ec8c056a2481a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9706fa8ad1..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:46:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 973d29f6d8..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3361--3f064219d7b74e991c906461148659cb84fe4b2dd62d73e947ad5e13607a3f28.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8e4714eb65 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:46:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..89876e5993 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13894--a7b837b7ad1011fc79ab63ec478cfa33c0179ce2eb404b0aa1cd6106d99f21e8.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e061edaa84 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:31:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d605ac93e4 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14925--0e0ab958dba7e6242a8b6f5f7990475bc1f4302c392b194f8bbdea2f6ac4e33e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9a83fce819 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:39:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..71faf7674e --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--b1c4e4b0b62f5a7e637222788bf9e1068ddcf9bd84d46abc31c218da0b970992.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_seg-manual.json deleted file mode 100644 index b7831fd922..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:36:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cca9875d5a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105345--27c6d1c91157ffe01c78bd1267bfd9d733840cedb0d7b1bf2d4058e2972c3a7b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.nii.gz deleted file mode 100644 index 09c11cd7f9..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14868--2f9879e4d81acf20afba36ee964fb980460f83caa3636616daa25664069cbb45.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_seg-manual.json deleted file mode 100644 index 0e7c451ace..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:40:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ec557f32bb --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50600--21467f451154f5ebd527efa53fc896baf8a0bd5e9be4681e863ced23289ce401.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index bb1fb71eae..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7330--545afdabbf5820d330cdc53545adf4cb0bf4ed047ddbda7e7abd5515f210dd53.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee64079edb --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7299--d496b8ce590adf92fd997e02a8243daadd14e8927edc184fa07b3d363afe3ec6.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e226441d17 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50590--e9fdaf73bf0e94caeb7661fc75ceac4ab30f31e308b7106bbb1257def1cb80f3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 81ff1849c1..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:47:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 172491fb37..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3364--c7206bd395e575a912e805cccd621cb3f6dfccb8f371e9881b4dcce4c88f2598.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..70f3b81b8f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:47:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edb6f0060f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13743--17216ace51b8a7f4a3c62b770f3a6313cb89a3980bf99274337df0f1dcc9181a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6827c5ddf2 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier ml", + "Date": "2021-06-23 16:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c241a7c93 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14889--84fef5e14a21c61e6f4051daf750a9bfbb5236f2c61242a6ed9fdb77c1e5a4f8.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e3b185de19 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:40:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e605ca89ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2103--772b513e624d59c0f1670a752784a651d44e57451f5ff9880055af6d5099f86e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_seg-manual.json deleted file mode 100644 index f20b0068da..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:10:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..22051e4a1f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105359--934b1590101c52c771ccc4d0baa052d57fa104b493b133b294169b13c53eaa65.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.nii.gz deleted file mode 100644 index cf7b5f6c51..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15069--17f4b135cee2f2baa07a54fcee4f53a991c5cb8c7dd54761998c52cd5d14d5a3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d139566829 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--daf2a9fcd2bfb2ea37a56edf8006cc2b4f3290c867b0d1d497332196e524d7cf.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 14c7a4196c..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7251--143fccaa6c873ced8458933c872802cef8b8ea6934b3c4320cdb2ed5cbc89db3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz 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newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4a5bdb900f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50587--7931d915b9d3f993568b06e7b7f16498641e0ace86bff07ae2fabdd66b31dc9b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e7e9724537..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7259--36171443e37fba0f5076f1db60e68365302061ee842c38aa6e9c7f1c2d6c6c0b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8c5607af6a --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b0446d54b9 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7239--956c268b5bda4617b2223a0096597c69c81c9155a3f764c7876bd040290fec70.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1f9b8d6b53 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:10:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d85605a4ca --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8d09d443d1 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15090--28f098fa4d57b6f6fd3ad70099c61e6c0283541ac882c0c3a82955841ac7aa01.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ca2f7567e2 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5703ad0df4 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2068--52c867494a5141137ed4f9adf6648fceb90e0e26ad572173ea809b64794047d1.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 0f818f7b35..0000000000 --- a/derivatives/labels/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_seg-manual.json deleted file mode 100644 index 7ce498d79d..0000000000 --- a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier ml", - "Date": "2021-06-23 16:37:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ca3c91ee28 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105379--47bddf975ff9e22d1f2def6965064d6e324f68de1f2b106dd28235e2f2095621.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_seg-manual.nii.gz deleted file mode 100644 index 21b3107460..0000000000 --- a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14784--bebfe73ec55dd17478624bcd50b8a31be4e7ce727d52b1e47f493734c58b55d1.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_seg-manual.json deleted file mode 100644 index b78e812185..0000000000 --- a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:44:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bf4a37fba1 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50628--5288572b9705d668f67008fba1a585adabbb078c99879af16360363226530d24.nii.gz diff --git 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1651d2f211 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7316--4571f0f7755bffbdd8d495c20d57bfa91cd396331de729d07c593c05fb38c4c3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..124c978416 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50627--3940eae93d2ec163322bcd910b458be19e65472e71e99561a52302751dcc6529.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index eb017131e1..0000000000 --- a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-05 18:00:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 537f201460..0000000000 --- a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3380--8294c0ac7c65d92722d6d862c47e6edfead9b8073660d16feb98e9958b1dcdff.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6b185a135d --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e651ed18b4 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--f370fd8f2bd6e25dfc1f008f9fdbd3ab890960740ebded063a0db8e310678d1a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_seg-manual.json deleted file mode 100644 index 0afadde30d..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:51:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d10bbda94 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--393f9ee735629edb25e2e81a8fb8c40185e1fcf8ad3f1cdcbe978636e0dcd10b.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_seg-manual.nii.gz deleted file mode 100644 index 05fa10043d..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 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a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_seg-manual.json deleted file mode 100644 index 9fd61a06dd..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 14:04:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6d4f12e28f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50597--ea5b438ea95e96c0d07b11a8dbf0b65dc69cde89fc53a02c39a925f13d58f772.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 3e9e9af66c..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:27:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c605101c01..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3439--7e41e70d89e8708d5f1b83a88fe3ad07c4c616e65fe0a2841710f64f0464e179.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..425f5799f2 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:27:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b567033760 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13978--c83fe0fb0625cddd0ac40309b808f515690e03ff93e99578d6366f5d49895ebd.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b3eec9bfb0 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50588--596d0274d65dc88930695705a1876809aebfcd3dd7458a4c5adfd5a05e6ee5d0.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 993074c3ba..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 09:39:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c23fbe9b3b..0000000000 --- a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3408--9cd9e17444d49ea126bb567ed37ce2c176e60f5912fc8f60bc79bf045f5a0263.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..14340a151d --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:51:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..633ad6d28e --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14856--fc66013fb35446503dc3e154287f347347a215c135666cc5804899802f4c77b1.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..802388ed08 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 14:04:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dc9dd1137b --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--cf3a797efb7fe70e1edf743b03a2dd1d87c1c06c762fbccd1b56652e522b8207.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_seg-manual.json deleted file mode 100644 index 18f52ca5c9..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:54:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fa8fd15f57 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105375--06a6a9bda54ddd6137a367bd6d1e5c9f4bddf0b9a0aacf76af0eb79ff592f66c.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_seg-manual.nii.gz deleted file mode 100644 index b6c5ee305f..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 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a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_seg-manual.json deleted file mode 100644 index 8f1c7b6d1d..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:08:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..29875958d6 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--b4f53efdeda4703ff8f56d2a9d1e7288e648697e12347eb37246fa05318b8f6a.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine 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"Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..10a222c575 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7315--6a03dbc1942d54358f4bf4826a6d8f8ca98508526e37ce6b19dbd4e0e9b275a4.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..30a0359ac0 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--488f5ad45b9da4df35164660e12c53f16f6ea54a58b7a399478ac43f614e4948.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 122d0df491..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:09:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e1cb382f7f..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3375--64c59e89d45ffb7afd679642b6834da3f2fecac5701bf39904dedff519fb38b8.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f6f08886f --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c4a109ff71 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2102--b7994a43c6430150fbcd16a227071e69684b26fb689a32fb91f5fe6bbff73c87.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_seg-manual.json deleted file mode 100644 index 0431562339..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:55:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a7beca3ffa --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105372--9012bd61d62f9d620e7b36339e4c1b7329b01f79e547d262fa6dbfbd353e8cb3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.nii.gz deleted file mode 100644 index 26e786935d..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14927--337adb93c08023e95436606c0728b22aca1c2d0a0bf094b862efee61b5887dc2.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..65e6afd023 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--8a1679e6a7e2cd68d7ad8ef154d1be166e51a451c5c9dcbc5740f634012ba252.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f5b934d49f..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7362--cb8bc2a113fec7458542c69a393c6fc24ab69afbfb45ff3e46d2c7a19e4f75a7.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b7edf53e66 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..38c3a9541d --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7298--a7d6cc0bafe91e1d3edd0723eef9eb5a6f28e1d786c1198c6a9c217215c274ee.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d1def474d8 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--6f31ed85700c17f77378fac500b45974fadac75719b6d4a92a3b1f16f39651c6.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7589b2ab0f..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:11:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index fb86b35cb9..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3336--d515f5431cc60b67c37a8abbad5f0f782242dc8ce87a959b073013f0517c9023.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bddfbf4d3b --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:11:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee63d1e09e --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13743--7bd9545807186ceba879d32c0a763dd55fdfddb5dc214442d2c9dd88847131d3.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..3a5d39850e --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:55:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..949e8c2682 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14948--e79e590877bd8b5c064dd1c62288e464bd8e2c164ab6a49c8ca782c207eee10e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..88aded3abc --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_seg-manual.json rename to derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6417d9a9ec --- /dev/null +++ b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2095--acc663a7b6a62548876bf323f894a83b2662242f38c47d83a762ee2fc64b7f9e.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_seg-manual.json deleted file mode 100644 index 09bae127a2..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:56:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7f68a6a6f5 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105374--65a0ea193c234b49909655b06eb24eee017e06176baddc136e97875521e15ffd.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.nii.gz deleted file mode 100644 index 2192a78125..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14909--8de0dc0a965e1fbe7eee2b58644d9719a33d3e10c0a2309037c2f54c162fa909.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..37d8c49c56 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--035a6e177486debecdf15543cf1516862ee3a518ae8f2617d0019ec4379bc6cd.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0757b3e75a..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7347--13b595f7e8404432f2a1a2ca7d7a20a60d58985a9ec2b1faddf601ff11eb49a5.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b7edf53e66 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d8340af833 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7344--81ea6020a45286e4b49a799069b731e69fd7fbb723be14053e7759d765b1e45d.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..42bfebf9c1 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50629--64c89840d113ca913ace2de0008a318e6f9afd1c9e0c5b7654392ae02274a3ef.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index df2d4f880a..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:10:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 13a2078c04..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3387--436e29e9adb760031fb878f9722208e2e8ec477ed81d69a5ca6c34888d8b21f0.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f21da8bd5 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:10:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..71c969c483 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13868--52a72e4ad1e2c6017af73117a540684d1f4583e02611303e9beb0dfdee68af0c.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a54530bd9c --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:56:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0ce232dde --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14930--c305f9783f160ec77012aba1efcec3a1bf39cccf92e66a282455bcfe30394558.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..88aded3abc --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..62fa392a27 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2098--7ed5de68216a89443b6bde8ee149e141a0211587b6ece3c5022d397c2e187c8e.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_seg-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_seg-manual.json deleted file mode 100644 index c5263f5919..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 13:59:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.nii.gz deleted file mode 100644 index c35ff699e1..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14984--d6c98daa4b4aecd796e6a60c8766c8b63dcb8380333e2085df0a89dfc20d48f3.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_seg-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_seg-manual.json deleted file mode 100644 index fdd9ace462..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:09:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8ebc4479f2..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7351--a78188ebfb4e05419e1fdb7694dc6eddd37b306c5306b2c3c6bbbf2f7cf858bc.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b7edf53e66 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..24adfe0896 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7311--40de1c0acc5de03db8346a16fba4010c3abb6ab6a2d18d2c75a61a08b23b4b1e.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 5acfafcb47..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:12:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c2fa4d4bad..0000000000 --- a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3363--697ba8ffe7c3e281d54751eedc7515887164e581266b4b5af47e115e60f9e443.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bf27c3f9ba --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:12:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..367164537b --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13818--c30ae4874da5bc3807dd57b88555d85ed5a97785b974d6d23ac215b3067e64cd.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..924a93bb71 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 13:59:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ce6430b6d --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15005--b1bcc574263c0a67ede238ae4b8b31a25942ea9026ec585e312837af596e8866.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c12aca3abc --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:09:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba02/anat/sub-oxfordOhba02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_seg-manual.json deleted file mode 100644 index 4aa293ffdf..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier MorinLupien", - "Date": "2021-07-05 14:01:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ac0d89eee3 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105377--a00528d07ddfac434d90f10d55ecf272bca25f461dc30c5e49c38fdb8fccf3ef.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.nii.gz deleted file mode 100644 index 6ff68f65dc..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14845--606c18a43d16c00bb3a41918cd7b259e32cfd575b197e903903e475bb1346ff9.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3864a76743 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--aa1f63e443b42b879c7152bfc86ebee97699d288315103e49544112e5a687c1f.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a050493aa0..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7406--a64ff19c94256125e9a08ac929f70e283f9f0b5b0dc80c1275edc16f1d238d52.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b7edf53e66 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e0c727392a --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7326--5bf0e340d2562ae4c8fe62835f6a9dfd309ecd3ff95e9f2b734dca5918fbb6fb.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..58eb524af8 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--0bd2471770155da5c4e6dea8b93331279284ea2d7c3187b24a0441210f67c41a.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 82778cd436..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1c5ab1dabe..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7301--c7f98c41e91ffe514be88493f2e79bc8b11b9f751392b55dca1cf9f3f35c0093.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c5ca0a68cc --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e0c269d480 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7243--b93d7bffc80c99f3a58303d61b73f8bc271ee8c49c196176b5f9ee84fef503df.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c0ed73a223 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier MorinLupien", + "Date": "2021-07-05 14:01:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fae58bfcc1 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14866--bcf274eda5e6df184f56b7dff08a0e4c1b805a236daffa6a2e6378ef168454e6.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..88aded3abc --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_seg-manual.json rename to derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..905cb4ea31 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--704acc2995624a1c3c22422bef79e55788c28fcab4694bb6e8dd4f16f66baec9.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_seg-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_seg-manual.json deleted file mode 100644 index 46b15df1c5..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:26:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3e492e6b8c --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105372--6e2a032bf0ece30ec5cb88aeb9e6fd3e98fc90d7043c763ee1caed3080483e45.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.nii.gz deleted file mode 100644 index cc99cbf77f..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14780--bb3c604d2a4f776e5620a1deb26513f11ce9b0066beffaafeec2cf3f1a3f067e.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e548467201 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--12bfc0634a0c800819a123612918593e02af0039afecd79397a773b4908c866b.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 716f40e7da..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:15:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6c6173e5f7..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3400--fdc3452dc49e2295be726f0d4ae76a9a29124b555cfcdf31164494baae0ba84b.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..96e9d9ce6f --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:15:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0428e4251 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13850--fcfc6e1e2f5625db6b19bac7fb3cef196023a286da93d860f30a97ef43f61ea7.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..36538ab88d --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50632--bf52173862d1144f0049d0136f15c02f97f894a1b4ddb2d6f242716ff451189f.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f893b6d7c0..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f18c03fcee..0000000000 --- a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7169--7261308b53823d7af7457142cd5054ff19f2ffa3a55279b0634ca95785854dd4.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b7edf53e66 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c0a5263be --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7135--df7be35a2382beda5c7bd8497907c6a16a305710ef17e61b06451a4b2b49d86d.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..3bdb45c059 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:26:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..5e4755fd10 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a2e023b4a --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14801--475564d1883c6c032894dcee5f3a449c2fcb7ccdc11d8ba13150b3d3abdaf570.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4665318346 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_seg-manual.json b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_seg-manual.json rename to derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..364c1198ea --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2083--004e4a630f6c9a23782c8ae5f511da0cc3e7f98bc09e0613ec107a6241e9d058.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.json new file mode 100644 index 0000000000..f3ae872141 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.json @@ -0,0 +1,4 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2024-03-07 16:07:48" +} diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.nii.gz new file mode 100644 index 0000000000..0677bbc15b --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_label-discs_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s69997--bcbf029d686990216537713392ea71687e17667d3b3477ad01625b792b03cccb.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.json deleted file mode 100644 index d7948b8771..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Nathan Molinier", - "Date": "2023-05-16 15:58:48" -} diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.nii.gz deleted file mode 100644 index 0cb488a5bc..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_labels-disc-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s70000--6f832ac6950cd70e49f1dee78e6fc24e5adcfe61e89ab095e8ff8c1e2440c062.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_seg-manual.json 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b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5d957c88d9 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105371--48e73a010f1755abcd64a9db90e0ad988a95f9ddc218a86e0e3ec734ae7f8820.nii.gz diff --git 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b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_seg-manual.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_seg-manual.json deleted file mode 100644 index f9e296a237..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:13:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8ad0162f5a --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--025aa38387e2715ba3e8b867065736836bbac7e84b5cf0b5067686ac6b3fb228.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e3b64be7ee..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7387--4cecaa2daaa6a5e442ab0b1aac27fc509fda0243cd7ead5a7a6b710ffa8d7798.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b3e6c7224 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7308--a0658858cf7c9412ec2daf3bc7522e94dcb4fff8686a7f62ea80b78624d9ccab.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ea3845fb80 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--c7bb4d83842bca1e8ef9af49e0a56ca10b017b3f454855fc7c85376dac238c22.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 22048aeb77..0000000000 --- a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51908--4757e87ee7335d907b9374a48b862e291a97033be99f48c33a5badf79b19ef33.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4e592aed35 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c8ed1a9117 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51862--a3a07dc3aa29dc8ab304b024455bbdd3c70d7f6b9ec0ff32bd0a078c7792c1ad.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_seg.json 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derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0d311d582e --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15035--94a6b56a2f55ef24126999532b3834b2979c094fd59a37d9e3d8f59e57e74b09.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b636c5cdff --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:13:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..01ff2e7356 --- /dev/null +++ b/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2077--7c08d1613554ae917671d73915a04f1b7520f4f98589581b8ab66c2f5810d8cf.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_labels-disc-manual.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_seg-manual.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_seg-manual.json deleted file mode 100644 index 728f0b9601..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivier MorinLupien", - "Date": "2021-07-05 14:06:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ac0594a6b5 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105347--0701fdedc8457756e0bd9032a34e76bf250ec94e7bbe0f534bbbfe2962fa1d72.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_seg-manual.nii.gz deleted file mode 100644 index 4f9da8cc97..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14857--63c6fee423ee41e71c4835c7c6e4b1e280b71ef3558244ab9544197234758c94.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_seg-manual.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_seg-manual.json deleted file mode 100644 index 4c46ac1641..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:13:50" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2f79e649d5 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50607--21c181cfed3b4dad34ee93f09ed0b302a9165eb211bb2643074563afef7c9f1b.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 133f96d833..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 10:29:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2f1a8dc7f5..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3437--528b8d61208d9cc4b6f43a7d6b32a169e5b244bd5f828e93ce2dc175ac2eed91.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8d58f70a4d --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 10:29:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d2f023c9cf --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13921--1c2c91fd55a26c63c3960aa0c671eaa7a204ab44d875ab305e895dbe46209a03.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..41c771016b --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--4db4c979e94f1315f63e6379cd69270f4506f835a799c9a095efe37939c6a2da.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8705ad71f9..0000000000 --- a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7178--6292057e0038557117693709a8d89db58a6b68e04b86f0b18a66fc70ca88836e.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2772c16827 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7115--40a0c3c54c749c6d3bde64182229afe78ffd0a09ffbaf5785da33c55b0377ca6.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..08213182dd --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivier MorinLupien", + "Date": "2021-07-05 14:06:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b157e81d3 --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14878--2df73c271710ad7c750077d41529f18c7bf3ab588daa68e3e816430708b330fb.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d4fdddb07a --- /dev/null +++ b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:13:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_seg-manual.json b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_seg-manual.json rename to derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..08333dda69 --- /dev/null +++ b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2072--a2ce51280b16fe96f242ac183e8680409aa09008f0fd177c60bcb1fec09bde08.nii.gz diff --git a/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_labels-disc-manual.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_seg-manual.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_seg-manual.json deleted file mode 100644 index 67a7ae2a42..0000000000 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:14:50" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c78b7d8299 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105352--e68623e5167b6fdfb0bc87229aeb0bba75c928d02b37dad16259c18b4119e3c6.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.nii.gz deleted file mode 100644 index adf97d458e..0000000000 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14857--280d4f01945c9bc1cc9178f695f38af284a5299d19dba8b043dc274a0def27f7.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_seg-manual.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_seg-manual.json deleted file mode 100644 index 3a724307f6..0000000000 --- a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:02:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..504db64cc6 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50595--aa48a27782643518a386fc6e7c340be4510287aefb8e3274077141bff69dca15.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_seg-manual.json 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a/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5aaa897130 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7130--2902f3b4979d846f8bc95161eb5246bc5c6080ee6de84889a16a10df8f5d69f6.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..59bc6a39e6 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:14:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia02/anat/sub-pavia02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f9273254fe --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14878--c5c48ff34a1afe579294a59f535d054a6b103b28d9005c1b09f1aa7887a55835.nii.gz diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..94890be6e8 --- /dev/null +++ b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:02:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/anat/sub-pavia02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from 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a/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f934351511 --- /dev/null +++ b/derivatives/labels/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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mode 100644 index 05eaa39ac2..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 23:17:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3e88cb9db5 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105367--846f252700a4960da55ed96234f8758339fe3b13b8df59effc76e9c5b3cb4139.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.nii.gz deleted file mode 100644 index 84096359ad..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15008--4fd21f1d4fbe483660fc559bfa84c341dc34a574d5a8e00215484cb3e4d16fc6.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_seg-manual.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_seg-manual.json deleted file mode 100644 index 9e7c15b3c4..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 21:39:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bca3544e38 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--463d6f4dff859a0a2b5530c7ecc262d8435e56b465a38766cd00dfd71d6a98b7.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d268956120..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7365--298204438e896376e5153651ef35691873f6ed9773c8b410a7817b6abd764cc1.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c9156b2b11 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7351--3706262243e169dfa66049a1aa23e5a28635cdbb99e89f6311be77ec77482ded.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b45b21b852 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50592--9c22a0d8dcac5f6d4c7bb8a37a7d574c2cafec486cea3a26807064bdbbc1abda.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d5fb21c01c..0000000000 --- a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7255--38632ecff074c16ae039f88f8260a3ad7b6dfd30ec840d737a48e649a45b18e6.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4e592aed35 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b0ae8ed414 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7213--d1d7c598b52aa03511dfeb9a077937f78f9a47944ef4f6c81cfd1c5e019abdf7.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..337e4dd65e --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 23:17:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia03/anat/sub-pavia03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia03/anat/sub-pavia03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..536a4764c5 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15029--243d3857eae8966beb90ae80b164d5e22eb128c839ba66fc382585a4a6a5081a.nii.gz diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..707d5be134 --- /dev/null +++ b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 21:39:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia03/anat/sub-pavia03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bd2ec45286 --- /dev/null +++ b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2089--fb019cccbd354e5e519984caae8af742e26227b0d54c70bbdf37aa273039b9a2.nii.gz diff --git a/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_labels-disc-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_seg-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_seg-manual.json deleted file mode 100644 index b2fc69c3bf..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:16:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7b6f08d5c8 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105370--a5c65f0ce7e15141185d0839215ed7e08ab1a6da2a9edaf31ce1eed2819c9e13.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.json deleted file mode 100644 index 0c765d1b05..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:03:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.nii.gz deleted file mode 100644 index cec3b72062..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6744--d5d946ed61f086272ec496aca64b386d0f1d0624bf9f23789b5e618204323486.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-CSF_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_seg-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..62c084d2aa --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--fe63b8d0cdb21b7267245e0f07f1c3035e782b724c65aaaee791770e56c5dab6.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4b748349da..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7246--acf8bd0450bed028439d51fa6d44770b1ed7ca89088ac4ce58847c2644c1a59c.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..35917f268c --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7251--3cf8ad01f712bb35c038eced8dffe0a19ea8986a62e3fe97faa2eddb5a02b678.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..97cbeaa49e --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--f402b345667bc4540d8bc08ec422f5fe0515573a9a8f54b6a31b6f2894b416cb.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index eae31bc0fc..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2ca7257990..0000000000 --- a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7166--2c4c6de79905690e65649fe7c286c70eabb4278d30a53ab9f0596765887e907f.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4fd690cdf1 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..13a2f7d14b --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7111--bceaeb630b991ef6c34b9077a26d8eee0315ea25694f52ea5b9e07a8eaf684e5.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f7b6ef5ec9 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:16:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..009c274f71 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:03:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9630ed0a57 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28204--4a997f46dfa34d978727be669fdbfe10aae4f746d80885d98456a17893177094.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4665318346 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/anat/sub-pavia04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..0919e4a3ca --- /dev/null +++ b/derivatives/labels/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s137043--f93223f9514b713194df03df99aec8a7e0e7e9f9c1eec11fb3f99b748192a83f.nii.gz diff --git a/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..04f4a12524 --- /dev/null +++ b/derivatives/labels/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2091--5f49aa66a7c65c419ab9e34963294ca3ec259d0e1ff626ce7e6efa57fb3c358a.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_labels-disc-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_seg-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_seg-manual.json deleted file mode 100644 index 421e8489af..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:18:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f2eac8649c --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105367--7e27d6464bfc280e90b02f344e61904d71c516648d9028373c2eafdf4a8513a5.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.nii.gz deleted file mode 100644 index 258d61dbc5..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14976--eb7ec8ef8e28a2d6fd8c5ff79637f7a26802980e5bd8169f8d14f8eabd6d9ac8.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_seg-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_seg-manual.json deleted file mode 100644 index 4853c064a1..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:08:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a693f451cd --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--d334de798f0ad384c92fe5a74a7aed246383850a0a9aa3c0a2a0b8ed837d799a.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 729fa28e38..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7382--6878a18a97c73767f1acd966788cea406f583048f77b3698be08b6e4c3145c0e.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5533c140db --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7360--e4ba537cccc0543cb221540fc9b9455e8679ad0487624a47e45cdc0cd5af927b.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..15a05b9ad3 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--0271e914e5a8451201a9ced4f68626eb04da3c8f4ec11c4fa3ace604a8d4ee02.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 01859567c7..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9016b3f7e4..0000000000 --- a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7266--8084c027122528144e8cfab7ea93ed6e4a441a9bb9e9794c50f3d39b6d44f090.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..37dac7f8f1 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6bc8ba607d --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7230--2981606f99e1a581f4ece297788aac87360828f4accc6482c5753f84ffe434c6.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..18f365b74c --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:18:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f13673b8a8 --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14997--88157d3484bae0db86071fbd49f3a4e00fa6f427501b9404ce853924c1e8a0f8.nii.gz diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b35fb6c76e --- /dev/null +++ b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:08:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia05/anat/sub-pavia05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bd9997eefb --- /dev/null +++ b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--ca7e49e63fac4c050e0cd238c8878d77c3316d95f0729558ebf1e530a5d1eb1b.nii.gz diff --git a/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_labels-disc-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_seg-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_seg-manual.json deleted file mode 100644 index 617d7d5e25..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:16:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5029c3912d --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105318--08db8bc5742a1e1bf366d09c9173618018fb10ae5c1615a93f296d210db9ce72.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.nii.gz deleted file mode 100644 index c8b38a466f..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14953--6bf0026c22f7041bc2b4cd37878943b6a3a1e083a37a24e1c381a5a2cbb985f0.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_labels-disc-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_seg-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_seg-manual.json deleted file mode 100644 index d516c4d776..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:03:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a04c9dbfcc --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50550--0798fc84dfc08faecfd978594dd5a3e812fb8c6a0aaffae23034f63bb964a532.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index cb0b980eb2..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:51:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4e7161a3d5..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3466--f681aef50957f3e2c75238ec3d1ae8d502b9fd5be25f6f2d269f4d8f2b2ab213.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..48aff1681c --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:51:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d8095638a --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13974--16f506f6e567abe1daa2344d1559c35ad798279d1152708d66a89ededf7f9cc6.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8002054331 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50555--5a46e825033fa511909a5d645419f558b6cf85a1d70cafc1c7bc0d7eb6018487.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ce4236f5c8..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:31:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e4be72a6e4..0000000000 --- a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3349--eef5db8b5874c44358e833dd00a391afebef9af2846435138dbec360d7c0c7c7.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2d60b9eb16 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:31:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..752f6d6dcd --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13728--e0951f9c8b9f2070095d37a1795c8f2e28f03b1ba1fcf2404bab273b5dae959d.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..29956da670 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:16:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd6f204fe8 --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14974--dd691869918ad0ee8518ac1d951db86505e91bb70f6787b4d3e8d3ab230e39b8.nii.gz diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b8aa4082eb --- /dev/null +++ b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:03:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia06/anat/sub-pavia06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_seg-manual.json b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_T2star_seg-manual.json rename to derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cab9d3536f --- /dev/null +++ b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2055--41a1df57e5583af0e3352900d5dbb299d812bf01fa21dd7205a64914f8071acc.nii.gz diff --git a/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform01/anat/sub-perform01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform01/anat/sub-perform01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_seg-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_seg-manual.json deleted file mode 100644 index e254752952..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 02:22:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..883eb263a5 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105373--f7898aa3bf5c021298b015d8409e2d477a50c5ab2576bc0747ed3036a67904ab.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.nii.gz deleted file mode 100644 index 6e8788379c..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14934--dac477b9301efba446c474e927d2a390a1bb8180bfb7acc4be01a00ec719f7f9.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform01/anat/sub-perform01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_seg-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_seg-manual.json deleted file mode 100644 index a2e0aa7a5f..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:46:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a1006c83b5 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52002--5d0795952e2053f56ee2ff010b06a7fe9a28f3f3dc6b42b60b66ed1998ab9fa1.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 5f5edd21c1..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:12:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c9b132ecd8..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3861--deab46371259383836eac76d93697ba37d172d92d7a9aae1e75168ff87360443.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..86f2518435 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:12:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..970a5856ea --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15167--3065369eeedd3e62a83ba73e6d1cfe6aa6a913b771306b96367b6c60bdcd121c.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5ca20fdd21 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52005--e8656ecabc8786b0508038afe655746928a42fb245df2de8f3dda9252bd2825d.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 3fbcf2f1cf..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:57:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 846974fc91..0000000000 --- a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3762--9d018b09da3d337097c431d6aacaf12971260060a3a4402cecb5361fa9ca0025.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6280b70f43 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:57:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d4d0e2a992 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14924--2a40bd55e1acbeddfc73a7a2e2fc33f167aca35cfeee2655c4c5f71440e71800.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..2d41601774 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 02:22:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ac8e51f5f --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14955--2982cd5ded1bb59240cb617e5dc62f92a2b6b5178c6def8ee80c053945f69aff.nii.gz diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c9265f933f --- /dev/null +++ b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:46:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/anat/sub-perform01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform01/anat/sub-perform01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0df20995fc --- /dev/null +++ b/derivatives/labels/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5081--2d08d6ffb19cba827b6c9a044a62cc1f9cefe0dbcb84168df11226164b789605.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform02/anat/sub-perform02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform02/anat/sub-perform02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_seg-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_seg-manual.json deleted file mode 100644 index f04cc02f12..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-02 12:37:42" -} diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e2246f663f --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105363--cdd333c62060b64e8ddf062d540358937553097fbec8b701773af5696c715aa7.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.json deleted file mode 100644 index d292ca4377..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:28:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.nii.gz deleted file mode 100644 index 6b311f76f6..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6859--98d9d9115654ce544cee87cdd7d9bf73383b29bfb766b528f79c1f8841a1cee6.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-CSF_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_seg-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_seg-manual.json deleted file mode 100644 index fb3c07a726..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author":"Sandrine Bedard", - "Date": "2022-08-04 15:24:09" -} diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..67775542cc --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51997--f8d6bd3b2b00d5a33498aaad63da9fad520048a4606690a47134f69e33fdbdc2.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bc6fca8ba9..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:07:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9b0f0380fc..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3859--419be9d4fe57103f6478987392806f86c95099c3fa185194d46574c7c8215b4b.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6acadce268 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:07:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..070d0db738 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15117--f19820b78e72962ad619f8da0ceb1402e42355494221bb73d9357f2bc8b15455.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4b423ad23b --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52006--64e24aea32d12f088eccdabbe4a2808e7472afc2ff7c3fe312436c25de8da8b6.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6a55ab256c..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:23:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 24f7e3c293..0000000000 --- a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3725--e958d6be118fc92b431e90fdf3b6de1741e1483b06c1f9e73fd8a6ffa2481134.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4b5015bd42 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:23:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..37d4477f39 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14821--a3feab2b3b28e1be3b2eb12fd28296e4594387001cfddf86270e3e3bbe9600a7.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..3ad60b20d5 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-02 12:37:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..d0b3da26a5 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:28:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2a7e56f12 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28514--2399dc356d9ea73161335c60a201ad89611153e860ff90fd8789272f5b584e9c.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9e3c257d9e --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-04 15:24:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/anat/sub-perform02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.nii.gz b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.nii.gz new file mode 100644 index 0000000000..bc677c85cd --- /dev/null +++ b/derivatives/labels/sub-perform02/anat/sub-perform02_space-other_T2w_label-canal_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s120554--7e1967774f553add7fa46b9584f7d828b936c105a2da0ac431d82deaaaef8e39.nii.gz diff --git a/derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d183ec94ef --- /dev/null +++ b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5089--feac03bafdb16d9b45daf3bd76bd307d9f8ee2f71a8101a77a4d4f1498d8b264.nii.gz diff --git a/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-perform02/dwi/sub-perform02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform03/anat/sub-perform03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform03/anat/sub-perform03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_seg-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_seg-manual.json deleted file mode 100644 index 60bc3eaa9f..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 02:59:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7caa36f67d --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105373--d04da6059bd32e34ae8e1c9b1939a1defd4d417f785701d8b82ef62723c2e4ce.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.json deleted file mode 100644 index 811cc712a8..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:29:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.nii.gz deleted file mode 100644 index ce1ff568c7..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6884--d617e96343f094bcb928ae4c95a3e9e1aaf4aa6efd81ad25eb6709c83dc8e482.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform03/anat/sub-perform03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform03/anat/sub-perform03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_seg-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_seg-manual.json deleted file mode 100644 index 5552c60ecb..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-03 15:49:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4e75fac8d5 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52005--fd0e7307215055a247a87300a3bc98bae6a6373746b998f1729e14c1a9557955.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index ba76069b29..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:27:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 6f739f1969..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3873--39256e28a6937c2e8455bc5e769051e81e3ce6b2c8a451ec39c77bb7513f5265.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3acbb4e7ec --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:27:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d697f10a17 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15112--713ed4092154306716ec2ba7675f1096b131f726784ee8d2f429523ad83e4b08.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cb5422901b --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52006--dad95c01c5ea5e46afd0b6982b9b88969be6e219223a946396b0fadc36b8f89b.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 1e35853841..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:01:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ebb79e4ea7..0000000000 --- a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3766--60bef7393db12d65a877711a2f094284577e1fe3d3545f5a225b80f32bde1950.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5cce60659e --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:01:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46442cb8a6 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14916--55063d00e995c4d8eaaf45ead3f83ca6d10cc050841db6ac32a1ada28ad90b2e.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7527191ff4 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 02:59:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..abeb53b937 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:29:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c80a2f11f --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28452--ec9390343fdcaf0b4158bbb79628022f906d0dd82ce1964e7ac68a2f04eae108.nii.gz diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8e863c0df2 --- /dev/null +++ b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-03 15:49:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/anat/sub-perform03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform03/anat/sub-perform03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1457ab7efd --- /dev/null +++ b/derivatives/labels/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5101--8e2414f22162a0653717703a37d0f18bdbaf96a35e2103d382da5b2e5e9721c3.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform04/anat/sub-perform04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform04/anat/sub-perform04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_seg-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_seg-manual.json deleted file mode 100644 index 68116585a6..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-29 22:18:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0bed77eb96 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105348--458614471c78139d01e7cd0706dea966be425aaaf77e5024a9bdde64ead942c0.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.nii.gz deleted file mode 100644 index df5c337cab..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14923--15788351a7d62b693714d7652e16805e344b92ded78e5a37364fd1b585d32b68.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform04/anat/sub-perform04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_seg-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_seg-manual.json deleted file mode 100644 index db8f09872c..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:03:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3498127b9b --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52000--afc4ed3601ebaa2dcbbbf55c38de65af3e99e31d74f7de38a622b12f7e070a4f.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45bd1f71d4..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 625162cdd6..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8019--56cf1940489cf9b191a004521906038fbc0561e8b5dbd08ba44e1ed5f009a491.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4c103338b0 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c9d66244a2 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7987--e8fe48be3ac94889b44dabb49dc3aad5f5d9da4d869674de568d62f85f0a6667.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6b80d2c9ec --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52010--c61878c9addbf6f458dd10ba53c34fecc77381982287e00600e61edfad7b0321.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 173bc420bd..0000000000 --- a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7927--c6fbdb4348ea3ea3a720802b9c11500f565adbe619169872426b4e89d74edd86.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e99c6bd3a6 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b9f8487388 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7844--7a9f5233031272dae01abcc3c297893c1b7d04a4728bde20fb81dbde2a10d405.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..4a6cca0a8e --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-29 22:18:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..57222b1998 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce1143f775 --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14944--d3e17aa2cbcda15f9d71f66bf6878802e0427bde542b76262d2498d8c3292562.nii.gz diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..7f0289fd6d --- /dev/null +++ b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:03:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/anat/sub-perform04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform04/anat/sub-perform04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0c2eaa67d5 --- /dev/null +++ b/derivatives/labels/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5100--01f172a52aa34e6ca82fed1730dc9d0e0506c5153b6decf8cb7f61fedabcfa53.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform05/anat/sub-perform05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform05/anat/sub-perform05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_seg-manual.json b/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_seg-manual.json deleted file mode 100644 index dc2b00b781..0000000000 --- a/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 02:28:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e23aaeeeef --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105369--502d49bcfbb2419c8c536ff973559c56ffea6e017542fc2af2719a7b2d2ddb2a.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_seg-manual.nii.gz deleted file mode 100644 index fe6ccc8a46..0000000000 --- a/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14726--3d217ed04478a4ddaefee2836ae982b89e458531d6c31a291a45a19f5e21a60b.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform05/anat/sub-perform05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform05/anat/sub-perform05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a8125c8e7b --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51994--7a17d5eb4d96c0a0a4eaba154ad361c6907c5978b4673489d72b4e1badde5399.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f1c46e7000..0000000000 --- a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7901--69396c427cc2e8ea41f2e07510bad10725c371f1de75102ca354c073b0725418.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..14d03b2368 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7868--b8cda9dac74078324d84ea71a39d9c7f01dda7769f045c70ad707ad5cf5dc1d7.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..436ae09801 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51991--a6b011d6aaa6ddfd19cae704870b61ba89e8cac630cc44fc7349a5d20461efff.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 27e6ec660a..0000000000 --- a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7616--baff1a940421b6f3f0f666205db7c10421545ee4628fc939ba1dee66c39fb0b8.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e3c784a6fd --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7623--206166712fad231785b38bbbec8da705f6e0867d767b4b7d7178ca499a5de155.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a375f13275 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 02:28:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ec5c8a311 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14747--fa15f4633760309e61de37fd83390ab9cc61fc034723c1bdf755d0f304ab978a.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1d879c8793 --- /dev/null +++ b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2star_seg-manual.json b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T2star_seg-manual.json rename to derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8f4948dc6f --- /dev/null +++ b/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5098--f57a21280beede25f50842f8664306afd314783483effd71ff0be33d5019a974.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_labels-disc-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-perform06/anat/sub-perform06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform06/anat/sub-perform06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_seg-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_seg-manual.json deleted file mode 100644 index a9db017688..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:34:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ffd545b786 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--5e35001adcd7729724594e39ffaf60f793a535eb31b5417001ec24274a71f7d2.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_seg-manual.nii.gz deleted file mode 100644 index c1ac94716e..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14888--ac9df9f5e6470fadd3164f3a4bc8e6d223b6535bf741251b83a16961fa250608.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_labels-disc-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-perform06/anat/sub-perform06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-perform06/anat/sub-perform06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_seg-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_seg-manual.json deleted file mode 100644 index cfa9954563..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:05:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..327f4744e4 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52000--9fe2e0a936c8ba6dc07193864889424e364a18af565a1245a093c1b91b28f91e.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index c392c3ee6f..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:08:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index fa0d180cb1..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3868--dcb38e4c393ccecfc85e72103560d7d4fdc5bd42cd90f12a51550a39d406b9d1.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..231e102c94 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:08:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5b126150f0 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15219--e26ca2b47af48a6011b6381d06423675dbc240de00a651b7ead8533dff6b56a1.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..74a06b8ef9 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52000--21274198f714d88c0df0c68bd8fc0110ebc63718c32ce82cf3535c7a3174f378.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a0ef8384ae..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:54:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b1c55e0409..0000000000 --- a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3742--e014ea395b38c568344578457ef55be9a1e7dec71a5f20ab5f27626b66a3a869.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bc5ea055e6 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:54:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0cc8c8ae2 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14868--f633bc6e26df8e1356ba8cd3a49002dae8955aaeaf04400f2824fcafe6b94563.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..353262bdc6 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:34:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e78eac59b --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14909--32d83b377f258bad29ed734aa587a02d07b7bc0968745aeb4e48363d6f03e97e.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8bba43be29 --- /dev/null +++ b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:05:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9f10c159a1 --- /dev/null +++ b/derivatives/labels/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5105--45f86631bab828285555848fdf6c17b381167dbd559da19135c9e3a87464d6ff.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_seg-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_seg-manual.json deleted file mode 100644 index 586aae08e1..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:35:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bce25a5bbf --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105373--23a3799e662df001667cda457bdb084811ee23fc8a0b1a2d0fd7fb6a764b82a3.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_seg-manual.nii.gz deleted file mode 100644 index 113ccc379b..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15143--59b2ff3eb949193974fa3820b7ddda1c82cc851854ed2bf9d4d51ee3e4bb8c0f.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_seg-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_seg-manual.json deleted file mode 100644 index 903b38e2fc..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:28:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1f08881f03 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--6a830461575761178f582f344ca6f1c2160fe71e63efec33fb4360be5b1c9be2.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d324eaf46c..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 23:00:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a778ee4fb1..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3497--00c74dee6ce3d4cdbb8346f0db47d433f8d1a0127f339cea22caf62c4aba1e68.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..35ebab15bc --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 23:00:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..158d894920 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14123--d3b6092edadd21f8ac7314a32f7457a0bb09bc49309149ece8b2c58995c0506a.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..18983c2486 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--7d8d9e87cc5b0acaa01285f2d3098638676d3a79af7cf2640125663c32135b1a.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 09cbab100b..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b471cf2188..0000000000 --- a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7224--5f4e381625c6942a907bb8d85d14c2a79ca7c9f8f2d37dcba9da02dd5abe9ddc.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a4e0189c40 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..97283227b3 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7202--9aebcc45acdc2710e3f6fea38a284312ed15d79e8aeb5f9bff88fd93617208d4.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..62f75344d1 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:35:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb189bc1da --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15164--ad39b3bb4c5c64e34bd8286556a5a740a4e0c9f033fdb9f55c15bb09d5608306.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d2a9fdee97 --- /dev/null +++ b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:28:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_T2w_seg-manual.json b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_T2w_seg-manual.json rename to derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..78e11bce99 --- /dev/null +++ b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2101--fe73cfbca5d1e3d21951ab011faff0b39f3f9684d8b1197e33c305180c96afac.nii.gz diff --git a/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_seg-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_seg-manual.json deleted file mode 100644 index e6a7e89d63..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:20:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c2aae24b8 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105373--0f942d021e0d8036e75dc47b0082d59c4f5ac037b34f65a76e9b23dbf7c426d8.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.nii.gz deleted file mode 100644 index c9b28b43b2..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14794--8fcf73f7774384de36206793de246afac302f908afb270f3903be4caf6bbe602.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_seg-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..739bb309c2 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--4372fe03e0d532b7924fbdbba3dd13ac8b25108b671ad38ec0087bdec9a16f12.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a0c2399417..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:58:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 40626550f4..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3408--1012b32cef866ee56cfc9fc497e2973aa01385a211350170c13e946aaa753258.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..501e9e6252 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:58:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ac4675e32 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13844--966589cc2f0eea990f9efbc905163f05140155c77154953f36d1b0e5000bf00c.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..abc08cf2e5 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--3c030e557da4cab160e51d22d45b3844852691b9ffb7956d2ee7baca7bc75781.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d0309b579c..0000000000 --- a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7176--3e47b1272d30d95bee1b7d48ca216f6920e33cf79c455c706afcc07a12bc01b0.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3702fe2680 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7170--06e9a95ccb152c3f9ba73468b5758d6f49ed469add4f188d2aed439c46d60d16.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b6134dd3fb --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:20:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2124f2b94a --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14815--94ab62ebf219d5737048b78abbb3ef9c420cf0f18e77921ea35925b62a948909.nii.gz diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1d879c8793 --- /dev/null +++ b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland02/anat/sub-queensland02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..abe9512e6a --- /dev/null +++ b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2105--33342d2801c0e80b7937227033a791efeb0c0460846933b97e4a38fe45677e2e.nii.gz diff --git a/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_seg-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_seg-manual.json deleted file mode 100644 index 6df69dc20a..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:19:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4e4b1d0074 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105364--fde1e1861e71c6a108f0ce8552c111395094d6d42681d99a9c25346d1d22ad64.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.nii.gz deleted file mode 100644 index 9aaa7c7751..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15099--cec9e6ffb81e0562897493faed876487208de22c58a255cf0bcf0605cb33e728.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_seg-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_seg-manual.json deleted file mode 100644 index 660fb08766..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:02:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..328779d946 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--eea15341b2162c13b8a135be700c8425e3e08f3e52c177c16ba526f9e5a58665.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c95d4060c5..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7386--4501cd6d6d8a9755c9c768c2b1e30051f7ad221aef6ba884c244c4e278128dca.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2bd386354f --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7351--79add19a5bab57a99839278cae4ffbf28a4b39e7e766b633f7bb21e33076008d.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d7544e405f --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--410300d8150339b0a48cd3ad9eabf652286299b5b41b494a18680aed710e2fd5.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 09cbab100b..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 423ec20b8a..0000000000 --- a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7221--996f3a6a736aac059146d151ab136b0e92c0338a350e50ee6b4a611b2264624d.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a4e0189c40 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ad4bdfd5d --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7182--771721f7ccca62e509c6597a9891e6fc2a0db3a53aa68e1770b0eeb7611e6007.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9b23fc5b10 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:19:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2edae689a6 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15120--17796f5d06320216e70d4ba805d8f574456e442b8034bdaed45d4d561f45ab27.nii.gz diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0ff27f9c32 --- /dev/null +++ b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:02:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland03/anat/sub-queensland03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0763f8dd04 --- /dev/null +++ b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--6e6b16f65a99a9b697502f4eeaeaf4e11a44979eb3c93a1d755c8b886eb90d14.nii.gz diff --git a/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_seg-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_seg-manual.json deleted file mode 100644 index 77b2aef307..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:20:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..53ed23e100 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105376--2009c9a9b635600e56ff2a049e2350508b7f28a581846670904d71e4ea4f3439.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.nii.gz deleted file mode 100644 index 8abb731bb5..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14723--6681f1d89bf2f76e6fbb0589cd5c78fdcf2324af2c35e678b4c755fd2765716c.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_seg-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_seg-manual.json deleted file mode 100644 index 07d79d2074..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 21:53:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d03bd28dfb --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--9627f03bb6efe282b783a285d65a863f2b009685b7ac6f53619e24d9d0871705.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 805daee13d..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:06:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4489a817b6..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3412--6fc85d77756ec38eb4dea7452cc52418940ec45852b1a599be9abc9025658486.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6670f31222 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:06:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e358ac8fbe --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13885--edaa782dab07ea4d4a038339f8d3b5da21df3aa0b4bb9557ae66fb4c0262eaf6.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fffe361f40 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--00a59c5005e1d606c90d3d302c3430ac76cc489c1ad2ff530146a1d9748ddb3e.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 52f1179f70..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:29:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 7de68410bd..0000000000 --- a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3297--3b8bceb86a07544fefaf7519cc06730b4fb7c3e287fc9cddc125a3e08ac9b26d.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df3f0c7801 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:29:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b941bee35 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13603--15d9f58b5cf12ab6aa6837d8eba12fcb63570e8cd83b108bbd26c5877752b084.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d4d65a038f --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:20:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bba0f72fc8 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14744--8cf8709947c81e52606c15626bc7f3f1eec11f3ec814691cc7bfdf79a6add5b9.nii.gz diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3415af33e0 --- /dev/null +++ b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 21:53:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland04/anat/sub-queensland04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform05/dwi/sub-perform05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..19a52b4794 --- /dev/null +++ b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2103--0949589b2186a254e8d39738d26e9cde2592b52413e9f8f9c70696aa68823508.nii.gz diff --git a/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_seg-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_seg-manual.json deleted file mode 100644 index 60646cf597..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:22:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aab0cea55b --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--8474b19a293cc2bf304baea7ac2dee8644fdefe4e63e4972efcbaf1500511631.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.nii.gz deleted file mode 100644 index 56e7790feb..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14930--31c220ea5ca2e7f14ac2fc1d59edc0e0010b223d27f03278a89cbb4ecab54836.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_seg-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_seg-manual.json deleted file mode 100644 index ba62d7eb12..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:25:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 03d9902a92..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7348--0d65adefe9f9115597b63076ddcc64f93543c672346cbb366131546c4a9cce9b.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81c84bd67d --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7364--8c1ffacc8373c295d6f4c053cc2ebd63e4e69827891bb70c86ba1b9fabaf6fca.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..20944d5b7e --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--2645c7ecb0305e5d8e44cc8b0dffb8bb46bfdb8b90d00618e75cb5b5742bd0bd.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7c7066ff75..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:42:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e671dc5e98..0000000000 --- a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3382--1e817affd24a3f7d9ceb767ceac2d088aaf9af55138e2e84b440ac4e1afc04c1.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8528cfeb3e --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:42:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3476bb653c --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13769--cd529c2f8ff0a520bdd07de6d4b2f01ecc0e7a68949a7734b77562991eb78fb9.nii.gz diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_seg.json 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a/derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e4a60a2582 --- /dev/null +++ b/derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:25:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland05/anat/sub-queensland05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-perform06/anat/sub-perform06_T2star_seg-manual.json b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-perform06/anat/sub-perform06_T2star_seg-manual.json rename to derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7fe4551964 --- /dev/null +++ b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2093--dcfa87ae70824234109c2ce9663bea5bf0bf4241e998e7e1c5ec69827e5c537e.nii.gz diff --git a/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_labels-disc-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_seg-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_seg-manual.json deleted file mode 100644 index dd95c0ca3a..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:21:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.nii.gz deleted file mode 100644 index 2ef7e3f82e..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14810--5e01f23f3dfe458566bde717928367ac50f17830ec05fb9f374f0b590cee1a24.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_labels-disc-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_seg-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_seg-manual.json deleted file mode 100644 index e1765553fd..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:07:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..57a7ec3d6f --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7280--67ac85d5510a30f28b4d1b4c98b3b56db38aaa515d10a359e4cf2536ae0e94f4.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f04377631e --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50578--8388e095446d01d3394ef21b6986d853af11220f0d9faa5dc30a37ee7575f7ea.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 70415adbd9..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:30:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index cb773de0e7..0000000000 --- a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3326--f9b9dd0e963ad685f41cd57a8a5f3ec1201a2a2876945bcf6641aced48865acd.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1a24ef11f7 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:30:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f52ea8692 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13711--b631305d6e6f27442889fa457f3ba28ed27d488857477980d112d89a6ebbc028.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..bba39ad946 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "olivierML", + "Date": "2021-07-05 14:21:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6b0ae7c890 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..21a70b395c --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14831--e56842ce368d26c698dd8e04cb70046d42be2a217006273feea2d5c4f23ec429.nii.gz diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6f380db2d6 --- /dev/null +++ b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:07:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland06/anat/sub-queensland06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_seg-manual.json b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-queensland01/anat/sub-queensland01_T2star_seg-manual.json rename to derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c7c7fd9871 --- /dev/null +++ b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--548009dd197f8b18a0d18ecd11eb84710da109a8ef994233b965249d70be9b35.nii.gz diff --git a/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_labels-disc-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_seg-manual.json deleted file mode 100644 index 9c31805073..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 15:50:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 4aee8b5032..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55331--6c0f34c26284de4a95ae65efe6da3447053ae9db7f65b4b59ce9b3704b28252e.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c0e7403613 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53891--083debb07c59e4ab89be1b2844a4b7f1e3a728259d47196fb6c259f641b9c0eb.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.nii.gz deleted file mode 100644 index 4328dca805..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8265--19b145fa99d8e1c1ead3a631d70677687801098dd9e1ced7bdd58d77b872d3ae.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_labels-disc-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_seg-manual.json deleted file mode 100644 index bcdeb79369..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:34:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dd5e08a7e5 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--a7d34627eeacc3ce0053f097e9868ed89000940823bf7464f4cdea82fb93ed7e.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_seg-manual.nii.gz 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a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f85fe3a175 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7409--5e5ba92a3a2818d2f4fe984c4861ca301841c8d668946e0377e8b0a98841e92e.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..44dc7dbd84 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50604--c0c52ad5607db440ca76bc5257c4f191325feb92bb24aacd943511a20fdc15cc.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 4bef29594d..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6fb9f212d5..0000000000 --- a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7330--425c878eadfcd63f8210add7a7199884adb8dd2a5ab40c2776af9d1b4ac829f7.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fee0c18a36 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee78314ea1 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7329--6033f026c47d1c6c03d16a52091c4a128f66f57852dc49673af05cf279b72341.nii.gz diff --git a/derivatives/labels/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_seg.json 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a/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6b84da33b7 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--1e7fba64d608e4458061856d3443ead778175ff444ece44c6322736adffe1d68.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_labels-disc-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_seg-manual.json deleted file mode 100644 index 3a3a493f05..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "olivierML", - "Date": "2021-07-05 14:24:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7f373d22a8 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53896--f172f6d7532ce505f0f9b2b58d2a3360a7b7684f6da2e8ca82ed959024498bdb.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_seg-manual.nii.gz deleted file mode 100644 index cf575eaeee..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8293--b0631300298a06789293c7c73b8aabd138b6c3bbe00deeb0e45c01ccf2c30870.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_labels-disc-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_seg-manual.json deleted file mode 100644 index d9ffb94158..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:16:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..22d3029b26 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--517da60674b352c5ef7d0e3158fe42bc9b2ab7d6c49d0dc3c62f4d03cf1a2eda.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a834f0b389..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:59:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_seg-manual.nii.gz 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a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a01a1fcd18 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13980--f5999bf8dfc4c19f158e8e6ec5593bbdb744cf676bb9bc3e0c2aaeefe317a4cd.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7d809deab8 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--36dc8629df2cd3faff6c0412cd67c96ff65293746f9efc37ef991c9752ab778f.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e88c234a25..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-06-30 22:43:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 4024bb895b..0000000000 --- a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3445--35eafcf943f8a94a367067a2d0d8b3486fdcda8bb0b80c4cd68756784608302e.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fc055dd528 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-06-30 22:43:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d4bb9aa8d5 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14016--0ad7292ceda8e4256d031c74e9e975aa9846829b91267a3862183327f37cb8be.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_seg.json 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b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..43400c5526 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8314--eadbefc268538b25029352c54816769ac758a827835d16374a450a699542b2ed.nii.gz diff --git 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a/derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_seg-manual.json b/derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_seg-manual.json rename to derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_seg-manual.json deleted file mode 100644 index 58dd04dd1b..0000000000 --- a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:13:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.json b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.json deleted file mode 100644 index 15ca20804f..0000000000 --- a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.nii.gz deleted file mode 100644 index bd17a4e8b0..0000000000 --- a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55331--0bc9f2d037f907c2c74676141ff1b787a3bb0bd6f2137ff110b387c2766217c1.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ca9ab6d3c9 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53891--25b99c7547c618d55b9b2cf819005c7e543545f4f07ccf777b17803afbe364b7.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_seg-manual.nii.gz deleted file mode 100644 index b558a60aac..0000000000 --- a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8375--56baf75d8429796489c3249a3704f5aaf6288e90f18bed503ff7ba2f72f3198e.nii.gz diff --git 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+1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..28da79aa00 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7310--ae9a2b2994c3a270ae9b93d6cc25589fe21edd92e510d0d1e5fcf634f36bf321.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cec286d2f9 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--4890db9ad9263cbad23a48da4499b68bcb72307d6133044658ee5aef3fcb30bc.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_MTS_seg-manual.json 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a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..9e9f41ac4a --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..ab45b9bcda --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..078be2ca5d --- /dev/null +++ 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derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_seg-manual.json deleted file mode 100644 index b5ccad58bb..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 15:56:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d85092c1d5 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53894--cf1f1f090fbc17533a51475bebc9098682d003c876edd3801208da9b5cfd6da3.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_seg-manual.nii.gz deleted file mode 100644 index 9c0ed561f0..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_seg-manual.json deleted file mode 100644 index 19996527dd..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:06:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bd26fe2692 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50627--fa7b19805ce157ce8389f728b64824ce1b9644084ab198dd92678f6605211f07.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 698d4a2835..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:28:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 61cb6428af..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3440--a30ab5a6d15a7c3c2e8586c9bfb0d98eaefc19d067e0beb172a9b13035a75b02.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..cde89fa758 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:28:56", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dd65dad873 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13966--4cccfc57ab9e3a3d23aae97bc90dc68464047db412c73e73e3725def900ad0db.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..68516f7fa7 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--58a3083602b248e74a69e0f4396d7704a6eb7342972d3a39b1e22e9ed327a41c.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 619fb00da1..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:25:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 472d08dbb4..0000000000 --- a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3396--368e73237257b73ae64259f694851bec349e886948a472bd440b821a4683f4f0.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_seg.json 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a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..449b42484d --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_seg-manual.json b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_seg-manual.json rename to derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4accf30914 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--ff6056b9bc6fda6572ff989ae1b9cb96817e0bde696bee2ae4f834736471a0f9.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_labels-disc-manual.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_seg-manual.json deleted file mode 100644 index 5e4f093784..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:33:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_label-discs_desc-warp_dlabel.json 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b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_seg-manual.json deleted file mode 100644 index 62b02422de..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:44:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..140d27db20 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--b0fb39913e362a01e15fcddc850dc673bb3fc7e6511c141a9b2f0410790153b8.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bd27ac3e88..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 01:04:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8214e3c0b5..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3472--7e737dfabcdd852860fd482356fd2e2caaae42ef4d12511b5a238f707c83e1da.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1e4d5d8bd3 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 01:04:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git 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"sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a3b02587dc --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--04a642e5f8870487d3b32329bbb7b136fe4bce756ac9119b2f779d293ec30a6b.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 0c94a67f14..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:08:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a010a345f7..0000000000 --- a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3441--42ea3a88552bc6007a6ac060ad0e058a29efd326845a004d4a93d45ce37aacfe.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..260b1572b1 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:08:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..37c197f3b2 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13975--7475b107de6e5221bcfaf73207532895a86c5f4b49796a397353319cc294061f.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_seg.json 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a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_seg-manual.json rename to derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_label-discs_desc-warp_dlabel.json 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b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_seg-manual.json deleted file mode 100644 index 2746aec191..0000000000 --- a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:10:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz 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"sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..626f56c59e --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--a85b48f9155b1633a94728882a7fc18a9bee86a1f5fa92be78c950939582c93c.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 37a428bc52..0000000000 --- a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:22:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 96b6de1631..0000000000 --- a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3501--df43b1b4e2a02bd93a8d1149864bf9d7dfcd3d09d88f129718f5e827b25d6213.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..fd22f0b63b --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:22:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..67363e678c --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14148--2924daa7c7056cc052094c917c24846ba4cb0f50cb7ba3ef73cb95029279de5d.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_label-SC_seg.json 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b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..53b12d69b2 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8282--51c04b394f4fe9a3489fc61f551c98a7824933a81cd4bfc613863c86e3aa46a7.nii.gz diff --git 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a/derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_seg-manual.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_seg-manual.json deleted file mode 100644 index 2c1c6bdb86..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:39:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7ec0365c92 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53885--4ed9a38f5fe16ee9d56b0408aae0267943656169e79ad3e00a2d5e2894889c56.nii.gz diff --git 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b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_seg-manual.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..44185f6807 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--5fe80beb89708dbfa668d3cd9093a14089cdf824acd556b6cb8963a7495f9214.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6393463c24..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:38:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 987a61ef22..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3501--853514bef695118dcceff4e01ab701369b02380ab3e9d453053e275068eb71b2.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c7f67049b9 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:38:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0f0eed867 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14107--5651ef80ab1dd8b4cf04f87093c8d3a3c51554ebc11bf6fe35ceb30e7ce8fadd.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f2cb5a42b6 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--3cc1a6df7b12ebbaa5e8a373a6a754b46de3f965c5510446b347c9bdb8c88c70.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6329d11520..0000000000 --- a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7319--60eaa455d452578335d8fcc89508024ad145b014db6585f4e727f9b16f70afc9.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8b9ab6b5d1 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d44d7a5095 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7225--4761bed5e5489e4c024046019076175d916b453c90b71510109052f6da35e01c.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..660e6c5fff --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:39:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..da2d572a36 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8258--fdf7503686be7ca842926687f1940a4b673e28d39efa8acc1f566ba5affcea94.nii.gz diff --git 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a/derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3d0bf074b8 --- /dev/null +++ b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2432--17d13bc78ea0684aab114ee32561c309216ee8c87c0f727da9fdd14909960868.nii.gz diff --git a/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_labels-disc-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_seg-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_seg-manual.json deleted file mode 100644 index 6f9b4c8e48..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:50:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5d493a44a6 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105359--6e6619c1319e5d041d228c628afd469342d8d829fe4bd87031130baee6a0b689.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.json deleted file mode 100644 index 8627ea19ee..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:38:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.nii.gz deleted file mode 100644 index dcc03c5d92..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6901--b1d63c81b6c1305afd2776852a481003b3fbf9d7641a4c7ac07dba0f4fd39e6f.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_labels-disc-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_seg-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_seg-manual.json deleted file mode 100644 index b06a76ccc9..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:24:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..552e96c25e --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36306--8794efd3bb630582ef916fcd599f7e73df2a714c678ec959b80e142e72988155.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1bd3b531d8..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:40:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0a914a4c9b..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2837--ec2c8bd15fef0b4e0c092508765d7a24acf34ba4a61fab986831e7cc5a3da920.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b9e153110d --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:40:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce658c32ec --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10755--d007430ad1a61938c94c112e1044e9fc2f2ffb0e16cc10ea245413efb100905f.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0e6bde25c2 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36298--9c37a6874086bb653e24550b00720d1b8d88fd770479c365f57ff715f38c72f1.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c6e7f305fd..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:11:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0988bb3441..0000000000 --- a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2725--0b65e512f39667b0cb04d840734eec67dd388d1b04d38b9c26f299fa9edf02f1.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..74f0dc59d9 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:11:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd4dd1508c --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10461--076717cfd5c8dbbd0d23695ec85732155b080622675cab9e3bbc98c29580f677.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..293ea8ca00 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:50:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..3d81c4a846 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:38:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..313c9c938c --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28500--94714a9a8451d5a797a6ab9a248c229e9975750c10700fa4dcb813bc4981951f.nii.gz diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3c2da792d3 --- /dev/null +++ b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:24:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford01/anat/sub-stanford01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git 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b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_seg-manual.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_seg-manual.json deleted file mode 100644 index b741338fb6..0000000000 --- a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 00:59:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f96d145562 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105358--0f94c571c5f524851fb4e241ca799b5cb9508e1af2306c3070362833a7c0ecef.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.nii.gz deleted file mode 100644 index 68e1fa1a04..0000000000 --- a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14887--70c4db8208ccdf420fae27a082e48e77220b557310179b811948f9dc6f068405.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_labels-disc-manual.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_seg-manual.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_seg-manual.json deleted file mode 100644 index de338744cb..0000000000 --- a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:26:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8dc65490e4 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5728--cc1d02c54bee769fae057af34dd262514c5f07f505823b4c30ff037935bf8664.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 8ea081f5c0..0000000000 --- a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5652--518ac962aaf692fba7304ed221638b064c998bf9b97b9372514a29bb645167d2.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e99c6bd3a6 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cbcb702598 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5646--7669dbc65101b6bb5fa135a3400ea50e0a8cce38b8a3edd13a4cceaed6e58b9e.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8792f5ef9d --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 00:59:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford02/anat/sub-stanford02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ca6329b9f --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14908--28ebcd6d09a3addea79b2b7b7fa5fb636baa0349fc0da2891dc844e39f823b79.nii.gz diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..2d37f6f5e0 --- /dev/null +++ b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:26:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford02/anat/sub-stanford02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_seg-manual.json b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_seg-manual.json rename to derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2d7ae3d06c --- /dev/null +++ b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5102--a671211dc1d3abd3fcef7df52f21c2a4a3fc2ebb2e23d72743c02b6f72cfc579.nii.gz diff --git a/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_labels-disc-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_seg-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_seg-manual.json deleted file mode 100644 index 0199df01b8..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-01 01:03:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..29127f2e2d --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105357--f2cfd0287cc61e584d0f7e815cc3dbd5b69454c22e5e11351cc7336ce5795a8b.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.json deleted file mode 100644 index 97e8758806..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.nii.gz deleted file mode 100644 index d93e41485d..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14828--0b9b044786781638bb83519a8ac8069c0068fe39bd4a81798d08e096d0e8df50.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_labels-disc-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_seg-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_seg-manual.json deleted file mode 100644 index fc37051a78..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:33:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e0c4a611eb --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36301--e4b6b9c4aae8d37d2408a0f219b0c340bc949aa2293d175776d34e4c29e04785.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 45f510b5fd..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:04:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e69f1c7f1a..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2838--e7f0b71e9550a5391e59b32560546eb0f5d4165a3e5ee82d10ab002e70f1f54f.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..24c59762bb --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:04:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f2e918eb6 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10739--e96cea2ac2b820fe18189025fbdad427d569e3a7bce11afab5fce757bd7a0202.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9470b35b87 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36294--8b84db10062ce9095f5e4d4a25384b99d7a049ddcb3e232bbf872ad97fa80d83.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 56a7d1f559..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:12:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 999cf8b9cb..0000000000 --- a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2695--2d9d126030ffe84d13d70bba9fe4a66201c8651152121e2275b5561735b2b74a.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4278a83773 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:12:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f916398738 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10463--539e37ae50d05f58a73b1ff49c46b86571f1c07cf251150102c0be9e6566a3e5.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b6371d2947 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-01 01:03:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9ed8eb979f --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b6320b8c5c --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14849--c63765f3f6d5d13c489435871aa0f3bbfc3d068eb5e21559cbb57f30fe881f47.nii.gz diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..8d9790ee18 --- /dev/null +++ b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:33:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/anat/sub-stanford03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..776dad3f81 --- /dev/null +++ b/derivatives/labels/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5108--07889d404a757896b6ff63391c90d076e21bca113be56ad7c8367cc064fc7108.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_labels-disc-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_seg-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_seg-manual.json deleted file mode 100644 index a3da215938..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 11:11:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..89ea72f0a5 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105348--a893a6c79239a68a60c793e5849f40bf876392315200b2f731ff63fc365e6c55.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.json deleted file mode 100644 index 672fd035ab..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:43:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.nii.gz deleted file mode 100644 index 989133ffa4..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6776--8bbf6a4fa35437069dbc3d9ca9823191586e392144f20eb4bb05ba8215e8914f.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_labels-disc-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_seg-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_seg-manual.json deleted file mode 100644 index 3452c02ca0..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:39:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..29b03ce4a8 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36309--b7a6d0891df61160812dcab0c85828c9699820c1e2297ff3042f3ea223abdb1e.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index ce33205e2e..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:07:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0a79b58311..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2870--bafb315367b09d6531a520688060766bde5e9c06b8a09642eb2b9e8b208bcbd5.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c008ca0b24 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:07:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..221f03fe0e --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10890--e137cd0b9eacceb26f14ee0195233cc96548add067a5a163a0f527f998dce365.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c8098acd34 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36324--80c5381c1b199790b2b3323d84f09844581d52bcb5a3c9db0348eafd667f35f2.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 09cbab100b..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2a7e613f58..0000000000 --- a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5671--3361d575a9f81b8f21cfa1502511c484347ded3c4e9867db2eb8e954e64e1eaf.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a4e0189c40 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e13531b00 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5656--294d7ad384edfb612e32030a22d0e884177751a6aa73af0fa1cdd04c77f3fb3e.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..054184818a --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 11:11:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e67a003ba5 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:43:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..695a807fd7 --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28321--79dd60223dd88920d1d740f202cfc400cffe36009a7924ef5a5eaf050b580468.nii.gz diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..382b2662cc --- /dev/null +++ b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:39:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford04/anat/sub-stanford04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f30e3b7449 --- /dev/null +++ b/derivatives/labels/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5066--05046fa268eab8b69e0df99eeaaa2dcb0b049974254ccdeff8d3d1c26fa413ff.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_labels-disc-manual.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_seg-manual.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_seg-manual.json deleted file mode 100644 index 83e84be7e6..0000000000 --- a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:21:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..142f536fca --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ec1c95ca83 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36312--68d4d00dd2ba3f9b534909777142e598a142d15a2b3f34a44465ec954effb8b9.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 99c03b9c07..0000000000 --- a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:09:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 070cd5b01b..0000000000 --- a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2848--43545e27dcff04b848d02ca5ea15764362cf661456b2673df2416e11c3a24c9b.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8fa7e68984 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:09:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1573953e87 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10786--80a237904fdbf368fa4a59dcb8177d60449926d03d989dc98807dd69b88fd968.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..916b88750e --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36321--15875849ad241fd9406a096867a9c18bbe53b9e07306a47396d7b2c79aa233a6.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ac969275eb..0000000000 --- a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5582--ebcb34f993f4842e7da4b0584ef8819393aa678c7b2aafd3351ca0023be78740.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4e592aed35 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0655db306b --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5586--ffed5686569d5af7e1e4fc73f93884fc2edc55d7d86913e6726cf7541966d1bc.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7141cd063a --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:21:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..503da769f6 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14931--250502021260c20c3c6a5c9d580ba4e92daa91a4ed38bb4a7fdf91aa5674d13a.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f958114723 --- /dev/null +++ b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_seg-manual.json b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T2star_seg-manual.json rename to derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e8f0596b76 --- /dev/null +++ b/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5093--027160bf9c50b45784143de8178f6efa6323450d816ab4b842e6e27a975ab774.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_labels-disc-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_seg-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_seg-manual.json deleted file mode 100644 index 061600a2be..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:50:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 08c0f904c6..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s107012--b1b24b76e66301798929a3a1449419499ef628aed2fa6f7773904dce5a4344a5.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4fc80f9c49 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105345--da8105d1d58096b5d865c6d8f60585ba379b6dbe1ddbb5f97344ab811c66a6a5.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.json deleted file mode 100644 index e6b6ec395d..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:14:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.nii.gz deleted file mode 100644 index e6ac29e5ee..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6746--428925b9867ac3aa44f5f05d9f8971c09569b4695ce1bd2faf8487621795410a.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_labels-disc-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_seg-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_seg-manual.json deleted file mode 100644 index f1d8609e95..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 14:46:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..022e2104d7 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36292--e6426070f96b3f4741526c4af4f5c9606b00635a145d21a6fdd13d2087d267c5.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 793f9c4698..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5710--904f647fd31f633d0995360de467ee0e4cdf15ed8c3ce046f6a54c5a92e0005d.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3d400cfe4f --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5664--5a79aa5a9e0716d5609a9fd00da8a39a08186ed37bc081b730af7ed5eeb35efd.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b4638cca2d --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36298--ffecc694c5928df48dc9a1d051d713996ccc5717f5a60bc3ba64649f48d651c9.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 87fe3eff0b..0000000000 --- a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5597--cb4207f71cccb191e27ce15cd7ca86c6c4c7b5a88af82ff874d4571fc61ff8cd.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6f252f1d77 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e68f8f2f05 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..f6a580f5f0 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s107018--9718f8143a620f78d061d53b51fed17d47bcad74c405176a5b79aaeca0eb9b09.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..37e502641c --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:14:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4b59ae5a72 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28239--96c2a8ff22bf853b46a926c7d59a1d778f84585d1e9bfa21dcfd5b22d346da64.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e82528dfd4 --- /dev/null +++ b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 14:46:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_seg-manual.json b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford05/anat/sub-stanford05_T2w_seg-manual.json rename to derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e38dbcc27b --- /dev/null +++ b/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5088--28869bbb5c28c70329b5a3b89251a392f74360771f51701e77f6ec6290718515.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_seg-manual.json deleted file mode 100644 index dcc049c277..0000000000 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:12:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..317aec8ada --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105388--b9ee31695f1b2d1934be3a44c7685d589501b21b42e735185e71c57bb4745de0.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_seg-manual.nii.gz deleted file mode 100644 index a870712c57..0000000000 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14950--94710a538909b4455e05f78abaccb46fdcd5ab26b4065aeaa9e4f2b4cc52da0e.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8dc426018c --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--0ed4f65d18be6ab98e65b9c77e24ee562cd2fb722081e3f2b79fce8fbb96ab21.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 139ee314c9..0000000000 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7293--ba371dde34371203028bc5237be3b51339cd7f227d8dc3921ee67b67f890ca5a.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..944bd37718 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7277--9ca9032255c13d953be53deaf32dc66ec2b1ff461d248e84802455edf0cc9aed.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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+/annex/objects/SHA256E-s50615--cbaa71d9490f2fdfd64821db362407ee59dba75e395fa65da0e676480f41c7e3.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9067e1d5cf..0000000000 --- a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7201--27d41d7f7dc025237c4aa22c906da85ac965ba5e54e188fd09d9f649fa25efce.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4e592aed35 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6fcf465ce5 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7133--1bce9158b091236f443bc601f90f88003c247178beca8678f286e863ae764c2e.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..de19a0f60e --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:12:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d5daf1a632 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14971--0b5bfb0d433fee9eebfbfba1ab4ddc6e7cb7f1692900d55b83fcf5cae9af7030.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f958114723 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a944861d5f --- /dev/null +++ b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5104--0648b8cec6e467f46d05abaad22a3353e3d44a5f54e7f65f1fed8d076eb5e8a9.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_seg-manual.json deleted file mode 100644 index e043a9e01c..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:13:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..12da545b08 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105370--e6b21c3d81c68665debdf2d43003da346edf2c4060815d8e2b4ad33a62ff631a.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.nii.gz deleted file mode 100644 index ed96ac60e3..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14977--49f1ced7a00be5d86103603a8c5ebea31f7fac1f04b835a664dd7f6ccc193887.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_seg-manual.json deleted file mode 100644 index b11c7aa02d..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 16:05:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1bb21cd7c1 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--0373044fec111aae25456865ea3e4859b62fe0be5ebad4dc57b81438bdd0e42b.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1e04cf2da3..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 14:44:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9f39a0c680..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3510--2cf4bb92502d6c443336f0048db95701f204e3d47ad456f0d385c34edfe45a51.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d45243e904 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 14:44:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..74cea6e8a8 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14130--3fd54d095b653e80d8a97da5b8bbb9b354eb817e6f0456980527d350064be3e2.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4ab7ec362b --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--6c62b4a1d990e5b2720a9736f98f2ad9e4e178782e12b4172ba35837282ddbb4.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7ccb33123f..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:30:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index aa3840e2e9..0000000000 --- a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3352--48c471408c6617e866f9db789526294c4e36dd26ea4b23c05f0ac454d57d2539.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..6975f3838c --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:30:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2f25be9526 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13759--03a3c5a7e2468b973a89ba7e4dfc6f62e87ba5cb98e2df053ee41cc5752f40f7.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f988de558f --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:13:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2e68c0ab6 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14998--c5cf41cd71127445be6e26e0c372bb32423b7f2d8dcdad9c040d899d2662b17f.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f7f919be5e --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 16:05:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ebaad23572 --- /dev/null +++ b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5111--f69b37c815e65c800f044db8c6ce8538a472499c9c43f6484a81252fac4f4403.nii.gz diff --git a/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_seg-manual.json deleted file mode 100644 index 60d08288e2..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:24:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b488a20e16 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105377--74c38d4c0a43f74f20913767f056abdd7871586dce90417ccda6327e1f064848.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.nii.gz deleted file mode 100644 index a71542d575..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14902--074a775bd29a13c277284abf568bffebbd19938d058f5012f3ff22cdf2ad0dd7.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_seg-manual.json deleted file mode 100644 index 24de37c815..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:27:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7cbab02071 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--ebf3e53ce02ebd757af08393783d71df849b5f79903b6d35047ad4219106ac9f.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 90ab11977e..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7358--ab60c3c5c5af08f70f78af7f0ac3646ae39f4c9946c170cf92cfce594a6155dc.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d9bfae2ea0 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7306--99cf568c312445b82c926c514b77d80f010580adc5bbec6ed7eb5ebdb8fd02a0.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..54fb12ded8 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50641--a881295900b73abe884ee4ffd54162166c2f7ae0b0475f7e48d30fefba4fe1f3.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d831e9780d..0000000000 --- a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7249--698c7fefbfe4e7773c0b01b66b1bd96afff1f5be61a2db3eb3078ead99c9efae.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f3b87a0cd4 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7221--5f6b7ac57c902e3b229613f86abc77005617f2500235ea65eb8ea6a7717ae0eb.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..64302e483d --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:24:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..235fe7f13d --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14923--6d601a79e6f888e4f277c25310bcec30ceb2625aee0302b1e1fc0d410d51344d.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d468096f15 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:27:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d316b014dc --- /dev/null +++ b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5104--cbb0096365495290f41e790cafaa76196fabf62d428f5048f6d184474587b0d7.nii.gz diff --git a/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_seg-manual.json deleted file mode 100644 index b9802747cc..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:15:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f2ade4ad1 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105372--207df301df167ea37646e98cbe14d36b1d89993d7dbf92f34bd8edcf34c0c901.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.nii.gz deleted file mode 100644 index 994c1edce8..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14743--c586f2ea942391d368e520a21e6946fa46448e633be1adca1afbc11e291e16e9.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_seg-manual.json deleted file mode 100644 index e591f87506..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:23:42" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..26237ff2f0 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--a427afdb290cf0378eb4d0f223c516da1a04600b7d3f05d3b9720b0dd1159a98.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a97f8d9da0..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7323--225e5050b6abc654d9b564d21c5fac1298bcd8b3688f6b292a6650b7ffc05d7f.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..48f8d20105 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7275--26fbc2637bfd6611394653925de30a99af039b84c78be90dfb49a2cb931f3870.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e3dc67b705 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50601--f39befc4c6aa338b8acc4f321b91727771d1134a9a5b05085728151f0e7f39cb.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index fe67440886..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:27:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a01b47205b..0000000000 --- a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3334--c8ac5a8e19b77585f7a83295b737f0f9c8e20e6be0af73c1fe8ee9e8ee895d9f.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a0df22aed5 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:27:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c5ea47586 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13730--9070805941e0d3b69dcc254819475ebbc9690434c1e7d5d93c6d89a772be1d1b.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..873d32e219 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:15:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d021b8f886 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14768--c874990c7b6762f879930fb593ac2620efb74ccff13c17cbcc5b43b4c2e50478.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..cfc8439f22 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:23:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2star_seg-manual.json rename to derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..af85752ba6 --- /dev/null +++ b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5115--f270a585ca3c7942842811a07f9711efae77dfa1c00bae5b2b37ea2e491f4521.nii.gz diff --git a/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_seg-manual.json deleted file mode 100644 index 4b3ae5b7d6..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:23:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..32741818bd --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105326--297d3ecbf5fecfd20339bc6daf7aa5a0d2ca884fc1a5e3ac61b82b6c2051b92a.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.nii.gz deleted file mode 100644 index 229c5109b5..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14881--61b0a6b7105074f1bd4c117c37feba2773d10207321ab144d829fd24bee37f16.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_seg-manual.json deleted file mode 100644 index 563783db9f..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-29 15:47:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b9d271b949 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50554--24eec25a7187d7a5f058846b6d4b41042183286ed680fe4eb40dfe5aabcf3808.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a0b1ab98b1..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7280--3927c4371c788d5333ac682c77329fc8b11f1f26f83f88c6e577fea89069e51b.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c3bdece30a --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7245--2b4f7b0a5ea9218ad1f7998d0f4693fd2b6b75228b7cda0bd19d96289f20411a.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5742a79fb6 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50558--380fdb1ef5854ac8013cf525d17d11981029afe280c57748f2b802ee036332c8.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f57a78187d..0000000000 --- a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7186--0584d7f7569b5a2a9f6c0bdd16c7c27f76eb0de86d84c147a2d9cee3596f7423.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..df5aa0c546 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d4f97d0978 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7164--cf967ffb0ca7c21b9448ec1718d0019935ee9777d6590c5b68d7137a3404376e.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9bead8769e --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:23:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2ad32ce6e --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14902--8a911101f33e1ab9888c1d7248eeaaf3a6aff5a27c7b5469d1797d1697613025.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..5fdfda1caa --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-29 15:47:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_T2w_seg-manual.json rename to derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bf12f63efa --- /dev/null +++ b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5056--3ed50d42ee1362de417bb383e88dc1c08cb827ce7e49658e76b1e40489390651.nii.gz diff --git a/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_seg-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_seg-manual.json deleted file mode 100644 index 53cea1b876..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:29:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..78c49db125 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105346--88f065f0d9f1e05e4df1ce92431af15d3f409c7fca4ccefc17368ae0ababc01c.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.nii.gz deleted file mode 100644 index 02ac99ef9a..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14803--bbea793768f0b2ce896f2974164638bd1677d2f92be1a81f468b9c0696a8c6bf.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_labels-disc-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_seg-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_seg-manual.json deleted file mode 100644 index 8d84a8a220..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 17:19:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..03c63249d1 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50607--08a3e2aa7df97391b900e33386e8e129d0144a952434700ac24753871c4e860a.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b04208fe40..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 14:45:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 33f7b4fd8f..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3426--906a4e6b4c646cd11fbb607edcc97d4aa2163defb7a778df94e5a42895253eab.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5583b67909 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 14:45:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..425cfe9199 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13945--0843995c33a1a0db2918854b9a3b5e1a0791b450718b8a052bb746a5e56f8195.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f2bef7fb71 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--118e6699593683284ffdea52f9b0f4ea50b72a24a1075d2f970ba370aa2a1abc.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 54e584d997..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:35:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3772262229..0000000000 --- a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3349--0f5d787e8238985fe6654e6057aa194424aa4ca16168b3ce7a84fc935b277957.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c80b298745 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:35:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1a5a0c74c --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13828--d58a2252d273beb72a6890babe5dc0e1091b00b494ec8d9828ffc991d25097e8.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..31d0b71cff --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:29:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..28da659c0f --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1cc7aa5817 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14827--32db54fc7ec3f92c49b26b3093902a4798ef004734f308ed4c0d85a5dbeb6913.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d88d2d2379 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 17:19:32", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..deee5157d0 --- /dev/null +++ b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5100--192531aceb913b31266f0b371ef7a81b7719d6fb8698545209b6f97d13e3db64.nii.gz diff --git a/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_seg-manual.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_seg-manual.json deleted file mode 100644 index dafb8d8cbe..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..57755f01c8 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105356--8818c36e201f96aa38f3901854c912dcc42af17bb88ef959a4c07e39135a4670.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_seg-manual.nii.gz deleted file mode 100644 index d424184c6e..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14894--92e22fa89d0336c332942138bce39300b2db735662642110c6e0920c24bc6967.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bc94e21bfa --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50577--8574eaf7b8903702c6a0f18358c6ab48d05df543e7e9fb69e6dc3dbbbbe680a5.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 9d7e057999..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 14:42:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 8d34e273b9..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3430--c520a5b982b5471f5f3f7892fb99260df43f0459b70e2ffc248ac0ebfce52505.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..348b465d4d --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 14:42:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..42ad5b7b65 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13984--8ca840fa5c28966b07a9be71a4190ddd4f2b0b76eef441bb2c42b01232a0a629.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..01ea43d1b2 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50589--2e1acf3c08deaa5fea9cb8c33a1d4c638566d4e61471c6899337a25059a66147.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 08d2956080..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:43:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index dc9f2ad462..0000000000 --- a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3331--753c758789a950bd075f99235296ec209e30c1a01b9750b13e4dfd980d3e601c.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..edb642f2da --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:43:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d16a1eaac0 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13716--62a6d36bb9feef1f4c4d5e27f8f5d574c5f7d538d5ec609a216e72de5c6c2c75.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ab471fe426 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..336b61ad47 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14915--a39f5fa035b8f6580c8baeacd390847e11c174707138a6fa5a1ca7024b1acfa6.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a3b7a43831 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c894475994 --- /dev/null +++ b/derivatives/labels/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2071--7563f76980602c4e975a9db877af7d71a171cd6dfa43efdcb6a7a12d4986ed1d.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_seg-manual.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_seg-manual.json deleted file mode 100644 index b6e7e0a5d5..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:50:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..66109668c0 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105367--db5351552bf9e170d7838e333c14ec82ec27cc3a8de612d49a0e5cbbfc34639d.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_seg-manual.nii.gz deleted file mode 100644 index 57ba04fe05..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15026--e9250a014318d969ed7a82faacffeba51cf5a50dba76a91ff8e717f8fabddac8.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_seg-manual.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_seg-manual.json deleted file mode 100644 index 78043dac0c..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:26:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3ded3c1b86 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--4adb30faa9c250c65f2ae42a85c99b071cd0c1e8a40874ef25a4eefa8afda67f.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b7958dd0b8..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7437--86e1644ac7878de3461a9750bda78212d098ef14cfcb64a741d30afa0b845c87.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fce81c04d --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7396--ddbc22edc4af558c88ea2de16b02cb1ff2687c9695e667c69b8a6c0a907db7e3.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..016ec246fc --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50603--017e9a808dec1307856c5e1f05cb8b69b37d47b42a647a44aee9ab93b3d7d853.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 7eb9adba9f..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:55:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c60deb6907..0000000000 --- a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3402--d43d169d1e8831847bd20e000bde1c379f723da5390241e35c630b9ecbb2e157.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2407d8a717 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:55:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..55280796ce --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13878--d32cfc7372cb4b0c870d8edf5c78ed5a1ea8454be91f77f54e749157a7a45fa9.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..df2f1aa153 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:50:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c3b8bee3a --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15047--6d162244a1dbb7c813abfc8ca73d350424c602f35d62120d441154397583fb6e.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e371736dd2 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:26:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_seg-manual.json b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2star_seg-manual.json rename to derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e83eac1553 --- /dev/null +++ b/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2087--7dba8aa05a161a242fc9aa87131b163bfb61702988115a118af1b8a729818887.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_seg-manual.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_seg-manual.json deleted file mode 100644 index 47b6893d75..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:28:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2fb06fa545 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105371--0b6cd3a1b6f577cae9c7751a7c8f8c0105c233b1e5183087e146417c1cb3dbc5.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_seg-manual.nii.gz deleted file mode 100644 index 6d134b394f..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14876--981facbf284bb93c637e093c9738beca18b5b74b630229cda5d2a4084331d0ff.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_seg-manual.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_seg-manual.json deleted file mode 100644 index 3c10f88d8f..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 18:27:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..950af0c1cc --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--a1e39ce6f99052441b4c2b41a560cd3bcf152585f3525eee908a8bcd36d21a6f.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 57aeaf49b5..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7310--8b704f1f6418715df948ad5710ac5ae9bde108765847b8788f8756092345e3de.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d29f1763bc --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7297--c9564015cf33f70cb2efb1c2de03e232a2ba834d84bfca887f63a01b6004147a.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..115cf79e74 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--25a3b156e1613124f10ee182a9fa14c7b0577a1047fbc2d66a3333f42fcfb621.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e4fdfd5cf3..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:51:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b827b4b902..0000000000 --- a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3366--07740ec4404864a88b3e646941845d0ac3e69b22ec5af035379d211806530c1c.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7a51e3e30a --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:51:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e415718705 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13765--355d865d450839170fae37e1cc9913419f70b51cab700fa6420f2e6394c20c03.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e212046c76 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:28:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d183c9e7e0 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14897--5939c20343d7ab185f16945e772cade0d97ac008fe7cca7fffa39478e20bd3f8.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..481a5bab82 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 18:27:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_seg-manual.json b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS01/anat/sub-tehranS01_T2w_seg-manual.json rename to derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..708dafdb56 --- /dev/null +++ b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2086--45f439737490bd6cef2f03a86ea3a7fafdb73144270ed4a4f9176b42fe21abc5.nii.gz diff --git a/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_seg-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_seg-manual.json deleted file mode 100644 index 83db785e2f..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:27:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f761c5b5b1 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105379--98b559add1c8f173ccd5f69c01209cc7fd0a9b4056a8884d5aa3e8102320be50.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.nii.gz deleted file mode 100644 index 1b0173dd25..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14893--2fde0b6dc4316636a69083afa452b3206023e33f61ef60c56284162aec6875ac.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_seg-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_seg-manual.json deleted file mode 100644 index b34433c844..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 17:53:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9a4872ef7e --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50632--087556a5321ac91701521499829f95f83563c214d74d99f17e911905e8ff5746.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7d1990cc44..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7300--af25d24095fb96f4c596d65f5cc5c8561f9c483f07c7e4c70fb5bdc563813f07.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50008262a9 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7288--e862d56b76b893346e4ca2b11e0114c807dd77c464fdf2ecc9f3564f1536e694.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f1e148a2ca --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--4d088cf5b0415a4ec8dfacc2f74d41e9ae07eef718b208ce41f94b4387dea825.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6a5f884ffa..0000000000 --- a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7132--bb417413c75a194b1529a2c995ae1cbbeba79e4e9b0f2a6dda0c69e88eed0346.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ddd69c4344 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7094--1d6474761959fdea41f73b5a7b3bbd3775017f6b7382fbcc93c900ccd2aa4992.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d0a31f0a1e --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:27:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f26714d4ab --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14914--3d35586dca15dcc674e4faa665b16d2676e6c74ab892ce989555964ae28ed4d0.nii.gz diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4f575ba9b4 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 17:53:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS04/anat/sub-tehranS04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..381d70824f --- /dev/null +++ b/derivatives/labels/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2094--f6d14e9f9d9f0d9f7acdb9a1fae7df6526482000abf1299da7dc0c07b7783d9f.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_seg-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_seg-manual.json deleted file mode 100644 index 9637685bbc..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:45:30" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5f69f860c5 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105317--955f68fc0a07fc735313accb07c31ebb2f20f9d113502391058e94d5d9d9e312.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.nii.gz deleted file mode 100644 index 5c8363a1b0..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14767--ce313fc4f6886a8ce8183d85ec22bb8ece9f78fd850506880cfdcfd2574539d1.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_seg-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_seg-manual.json deleted file mode 100644 index de5902fe4a..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:08:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..672195e00a --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50552--99256acee0f425e48ad8b6eb34aedd6fb8a0a88506ffb527b1e180547edba3c9.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d33327090a..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 14:51:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 12ae9d9c1c..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3430--89249baea016e1c142a3165afd2aa827c1f7760377182738d3d0f9a472089a3e.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..70f4a78795 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 14:51:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..84ca816ea3 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13849--2ddeb4c1097d07055f0b9bc1a6144fb9861eeb85afd8ac9fe646a3281acdeacf.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1736a25f3a --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50566--f5ebe4fd11dfa42df2c544586a07eb148981ff4de8472b6d1223b21a73d29abe.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c19979a89f..0000000000 --- a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7139--512b28290701f150b487373b971851bef89637750407b210bd3eed9fa3245a1c.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e1ddd12ed --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7120--122394e5dee73261202c7848e6c3bba80ceae4a2892d48457d2168a8315b244e.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7ac456fa63 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:45:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e46bfc10eb --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14788--167c7dd1391dd9b2ee649b36b5fd9dfbd573000149ffd818de90c12f01cad99e.nii.gz diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9db0634785 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:08:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS05/anat/sub-tehranS05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_seg-manual.json b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_T2star_seg-manual.json rename to derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..99162abdf7 --- /dev/null +++ b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2057--43749a448f5210ea17821406c948c7e3c41156e9c5c627050f4f9b772673345f.nii.gz diff --git a/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_labels-disc-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_seg-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_seg-manual.json deleted file mode 100644 index 1e9e5c1866..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:34:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fec49ac677 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105360--81d499a430a633027e28183a6f8e9d468ee86e82e3347b27d46a5b2266bd4f6f.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.json deleted file mode 100644 index 035b5793de..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:27:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.nii.gz deleted file mode 100644 index c6942865b3..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6879--0532e23107cd313d36cc8da1f5bae1d3369e2a57331543970840ec8d22b1e3be.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_labels-disc-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_seg-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_seg-manual.json deleted file mode 100644 index 9350d4aeb9..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-05 19:22:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..feac759eeb --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--cddfbbe5a3bf5fd1882793fccd6ddd2285b9ffc5e9a5eda2cd41e6fa4d24e775.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index cffbc8988d..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7399--e1f3f857091d6f6497e27b75f5541d176a5fe2c84f395328014164d7f7a0347f.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2224e41f6c --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c79182dfc1 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7382--ca9c22f6716f69bae3353704501f6ce08a251e513e95533e7521b57f56117cc8.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..874a6dc253 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--7cb31d18ab8c2fcc81f6637f1bf2c08d64a9e87272daaa12f07261124ee6f7c2.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 9b7d222a7b..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:44:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 3dd1888ed6..0000000000 --- a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3375--f1fe22912f84f5e5e2584c41de15177fabf43c17f35b408e19f055f97e6ed9c9.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..abc9c6a03d --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:44:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b0c3608f2 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13780--e82279e680fc717732ca1f41439d31d3584dae35d0f91a1c2887b32bfda19146.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..f26896d509 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:34:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..aa2e1e2d9d --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:27:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d83bc40874 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28483--ed0bc0dd31057854c01d9ffd6bdbf56b2f86f197014b7274d611aeb3d74d73e4.nii.gz diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..38d35fff92 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-05 19:22:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS06/anat/sub-tehranS06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d84df376e5 --- /dev/null +++ b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2097--8f6440c03b3705fb2cf421496b0514d4c8d096687475182f6bb3f8e0a3c9cf1f.nii.gz diff --git a/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_seg-manual.json deleted file mode 100644 index 670def5105..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:56:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..945c29a7be --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168448--c111cd0b2bb24be3a128ea8ef433e591edd1d6f1b15ed6103665ccbdfbaec185.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.json deleted file mode 100644 index 06a270c00a..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:53:01" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.nii.gz deleted file mode 100644 index 2efa62d77e..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10915--ee60919e5d07276675acbecd755833134b6666628615338fdfba48d8412fb4a6.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..54a78e8493 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52010--de0487b994f59ab997615fe1f7aec8d5b3df8920eee4122384c464679eeb5a65.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e0989c99b0..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:31:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 06bf574075..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3885--5d39c2192b31f9fae296198b08365ee1eff7b778f9d0ca261aaef0f45a418131.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..245209198b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:31:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b58320fb08 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15220--9ef76870fd4d274695f745c3afdb263ee77be39bafd1aacb73d8c88f0c313e19.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8ccaae2d06 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52006--b9b5e30c0c8cd6abdf12214544b48bc24054f5bc16fabfedaf3138090f2892f7.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d329092a29..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:47:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 14f4a86b47..0000000000 --- a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3750--15ebac4fca0cac9b3b5da7f4e8909ab33b58f800d332d072745a71a8118dca62.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e97df247e8 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:47:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e8b1eb6dae --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14906--02560ade93b8055538dac068c96f1ce605f0dee5cee83b87b5c492620067adca.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..ee7e0a182b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:56:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..14d51a2715 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:53:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..642d1fc53a --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s45472--a10590ef04c6165095cc97aebf294ce735806e28024922a77c914158c73ff1cf.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a3b7a43831 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..83ebb055f4 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5111--d83c0ad0b6ce8a5424adc452a51139bdb9dff66879aec45292f7eb52a2e7bcda.nii.gz diff --git a/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_seg-manual.json deleted file mode 100644 index 3ab86c507c..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-03 15:52:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cdd7c9020e --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168443--36e3cd73ad142cb4c0fde9dc4b2268f0f9d2ff83a80b08e4a1ba5fe4076170ac.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.json deleted file mode 100644 index 8a2b925af7..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 10:28:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.nii.gz deleted file mode 100644 index b5f4deff7a..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10842--de1d2b0371d4ac194dde3b2e6565fc10e9a800073071d75fb8bf877618d025d1.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_seg-manual.json deleted file mode 100644 index d67d76019f..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-29 15:02:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..faef914110 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36319--5306f2b3220fdae26488bf38350255048daa891ee78997caf11ed7bec0a964a5.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 16f895e688..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:37:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7dfe8c267d..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2815--1d9607b027f0824a8d4d1c02094abdcb9077af3c10cbaea5f9416aac0b21ca10.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b262391314 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:37:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a7a2bdae74 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10662--1afbec2c6ff147d0d6a8addb94ec253c541abb62b5d8b36b228062d1bfaa966b.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6eafff0433 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36333--97c2d6c463274a47bcec52f1fa537814d2d84d44225ba5fa160ae90d5d7c14a4.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2d5e6cb981..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-03 15:58:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index cf73ed4897..0000000000 --- a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2748--242d3acad17011f9398734b6ff8cfa42e3b07b6b8084d837a9ad40d582103c7c.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3bcfae0069 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-03 15:58:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90aca9be71 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10532--2938a1704d3e43767886f62cbab787e32ae34b0614d483394d329a98f56f1d91.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9c15e07d24 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-03 15:52:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8a0e1982f6 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 10:28:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7e02fa89e6 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s45266--fe2359292a2001994476f098cebea9f869582a8e3b600bd95ad957574faf2576.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4d765663d3 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-29 15:02:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_T2star_seg-manual.json rename to derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..60d0d1e1de --- /dev/null +++ b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5114--7c7beef38caa36bb283a180271c90d52b35d076ef80d5d02aa7a27bbda71443e.nii.gz diff --git a/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_seg-manual.json deleted file mode 100644 index 552b87d198..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..dd344eb9e8 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168452--0c252db214766647cca0391d11f49bf5031a8037acd9c2dc59d245241bcb9f7d.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.nii.gz deleted file mode 100644 index 5fdad7f6d6..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s23676--623c2b902cffacf88bbfbe4b48e556efe192fd969bad8532269c51c860997854.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_seg-manual.json deleted file mode 100644 index 6c111518ae..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 14:50:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f9ac047341 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36330--1d37e808ce6f87fff21ac14fe1d66ee06586210717ce55079464ab67c3c2f61d.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 1786d3d7f1..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:35:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 040d843f56..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2877--1f13be56254ab22893820efe06b107d791a5cefddf6fe8f511a6a5ca5ab15eb9.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c9a0d3b691 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:35:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..887ce5b589 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10814--c2a1377a9c663f5275752354341649538309e9e0fab2d8d34b5a7b06aa32a47f.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..db0b32e8f5 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36329--3d5ba24c4594b8c3618f4c3f3455990e9686c5889641746d0feb5ac75fe8e438.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 8a8051675c..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 09:27:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ff2b1e3f3f..0000000000 --- a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2816--f264482e2502e817ed21b1c60d004e1c64e8412f944caf06d157605ad3e928b0.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0bdd2536c1 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 09:27:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4f3b36b0f3 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10677--9d205f5642dccfd34d4f74567ba62f7f5617282561ca0a68c9d2766c7eec9591.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7b7a85addd --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d697776ddb --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23697--57d2f2236ef64c12ab9c265ab43929c080a9d70bab6c60bb3bf771701a7a7835.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..4763e41be0 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 14:50:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6baa8fa960 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5107--4da22ca9a077745de6c346c197bdd7f96fc9b866eeb6992855091f0a62945b09.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_seg-manual.json deleted file mode 100644 index b1c385f845..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-29 15:05:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..85772d2a4b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168442--139dc1dd74d6435259b6cf030911bf024c02d841345d82a66f263ae151035f03.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.json deleted file mode 100644 index feb13615ca..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 10:39:38" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.nii.gz deleted file mode 100644 index 0cabf8c282..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10757--d70fe1b413c77ffc10a39fa886455e1d9bdcd275a06f43e769d9a6e780bed7a4.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_seg-manual.json deleted file mode 100644 index abe8cb721c..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 15:00:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2fb9789828 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36316--2af2b311d43287b24bf0bbb6bb20f03839a57df3ece6d7ff273c7e739c4cecb6.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 36e34d716d..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:40:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0d4f08502d..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2783--ecd940a91c2f09d0cab84cbd21d7dc892a5dbe5266d5edc864f67c86d5705225.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0b6a4851ec --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:40:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..52a8a72e48 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10607--1598bc1423caba3d5ec74c7eccfe359529bace8d42c5aff49a872f2009c3d0f8.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..97df366a99 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36321--1e1330be051d401c2be023e9ed3419a7e185a098ea549e95b3abac148ac04205.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index df71d11996..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:24:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 7b4288e402..0000000000 --- a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2630--2dab37dd16827ca9837efd3803882836d9d62e18b9834bc909d237dc1c18d14a.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..68f914a0bd --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:24:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8cf4c16fd2 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10293--c132c97c15d816eb0f7296e415db69fb77942074370fdca33662eaf067549024.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..cb38f358bf --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-29 15:05:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..533169896a --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 10:39:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c6f441d9d --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s45095--73bac5e7fdb74ac4ba89db3b8c68e8777e4334ceb91116f39e8df61a38951616.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0492297fbd --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 15:00:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..00f22a87f5 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5103--75390b704e47c0b12c5c34f74ce36b1dc11fe3f354619dc2112da19bff1fe408.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_seg-manual.json deleted file mode 100644 index b395ed6529..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 12:30:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 778db5d985..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s170952--d06453d9576255b5fe37de6885eaccc55d80ce736f132bd1f1cf5ad224987f46.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7814bd0202 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168443--6bb748297a4e0624131525c58042d36c6002955e141007865ddce0137959ffa6.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.nii.gz deleted file mode 100644 index 1d328bb7d9..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s23592--c6fa1e4f39e80a09837d920e8b59cbfc81cfac45e54323af4658218210a69953.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5feea0b90b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36315--2ee5e4c748814aede536cf75fc4b0efa9b25956a17f48207d3e5125cdae4417b.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index aa8f2fc016..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:42:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 31e3d1b031..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2803--b3c5c48e2135ebb13cc5468f2efbd2af8b9f1bbe76ee5235e581fc5564eab3cb.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8f2ec4af88 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:42:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5325e5cc1b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10653--3a92ff3156d9a745509cd3c191b07dbe0152d5daad94220df3871c57d449fc48.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a4847979fd --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36331--4776effbead07fbf3706a597e3699b6810e45d3cc05e6882f2fcd8ccb7d16bc7.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6069a890c0..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:32:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1bf6a8b033..0000000000 --- a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2675--d8bc1228cd3c3fc587599378c2fd37054112266687bd243102cb78abd4ba00bf.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..83b7a9f176 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:32:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ccee37b020 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10371--ebfd0e137d021b7ba72cb228c8f4a4076cd015096d0fd9700d2d0f54f8e1fb12.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..66da472429 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 12:30:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..3ca7f81c55 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..db5cc37387 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s170971--5e464058a1fa3c47088440b52405c672f8b73cf245c51634be3fd7e2fc0c3a93.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..9147588297 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8cfd16eaef --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23613--0e8f6ed786009e5bed343c04a90398520c99efd16b6455f36426a4d690dc0852.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..a3b7a43831 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2bbd36544b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5108--016ced72e237d96c3bd4bbd4152529f9d81d615a72c1cbda8bf6f35f364c5d08.nii.gz diff --git a/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_seg-manual.json deleted file mode 100644 index e967576c8c..0000000000 --- a/derivatives/labels/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_seg-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_seg-manual.json deleted file mode 100644 index 6d4575d33f..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-04 13:00:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.json deleted file mode 100644 index 504f092660..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.nii.gz deleted file mode 100644 index a8b82ba97e..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s171134--d2c20cc61027f6fec0eb354b27b8620c5020824d71eb4d1ed76a5bb97825da6e.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9f2e15bd09 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168458--cf1f2de5efa4d4ca1518c93e49429e27aac3d8a06236287f0d965c3ec18e3e49.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_seg-manual.nii.gz deleted file mode 100644 index 3bf203947e..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s23657--5b2e77e79ee1a07798dcd24569ab5f7055b1298f522537463c2b2d89114f56c3.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_seg-manual.json deleted file mode 100644 index e5ea58c2a5..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-29 15:13:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fca117f109 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36316--b59926c4b0ca1f2f1c95594aabc323fe1ca8b6e5928b1d9b3b09369ff9d1dec6.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b90de7a163..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:38:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index dd81079fe1..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2811--c67a003b9978dbcf971e0dbb5ad76ce07dbc7a29c335ec5a7cfa987ac4997fad.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3d49ab9ab9 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:38:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..59ede0568a --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10721--cb2f69a6292406ba8cb30e2e41bb32ea27b6b753a88689ecf50d997ea6a92042.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..eef5a2fce3 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36326--a23356c625537ff9cf0a74b7a626fa233d48be88aa4af442459c10a70b81a798.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 568b208144..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 11:49:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 984ce56824..0000000000 --- a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2716--9e426c927446a69f3c030407b5d936d3c4bba150ecfdb6759c5987964a631bb2.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..488e9eb23b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 11:49:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..40d5ae9027 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10528--068adffb101b9ef6d12302acecc7513c8b2d4f0186ecceccba6bc1f5f0d60ac2.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fb24200a94 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-04 13:00:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..dfbb1fccd7 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..2dee6a714b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23678--a999d93036e9aeaac35e3a2e0333cbbe8d70f309cab26e196ff1ebd6186c6588.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e40f864d8b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-29 15:13:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_seg-manual.json b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_seg-manual.json rename to derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..759fa830ff --- /dev/null +++ b/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 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b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_seg-manual.json deleted file mode 100644 index b5f09f63c2..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-07 16:17:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..be01bc3cc6 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s168436--d97cf054f7d9579ca165136bcb8235c44ea37eb7fa9c9d44bc0e0227b9a22219.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_seg-manual.nii.gz deleted file mode 100644 index 561c2eca20..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s23817--f9412b11a6cbfdce4a929a4cb4c9650deb71e9101e4a9842023c60fbc9993d10.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_seg-manual.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_seg-manual.json deleted file mode 100644 index 01d7e80584..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:12:10" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d6dc148eb9 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36314--a30aee75cb9689fcf0dea02d74ea872439262cd33ae120741dc27a4e1cd00b8d.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d37aa6f96b..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s5742--675098e37202580d30e32b4cb826103c6c7b5bba10953e22b4586b4a366d93f6.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7370f9fec8 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5709--ea38919a4ffbee7c0c7449aa926e5bf2fa89472311ad92e56045afb4429f17f3.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9a4fea3469 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36306--c4eb5c4ec6dccc56f6294fd0e027378038b73a4b9523daecd50316030f522846.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ea671df7ef..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 11:52:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 1d968f0297..0000000000 --- a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s2664--df0257b1912015c641f0e9d81c09fe311a71bb3d2a6b519f96079325d17b7e2d.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a01da324bf --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 11:52:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c857503eef --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10365--d5e768fd71ed393fd71af4334ce04fe10e4088a9521a5c368b8fe5e3fa939977.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5af66c351d --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-07 16:17:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..455b86415e --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8bc3375c58 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23838--4fbddc1c6dd9e2974fe075430432dd9e7aa6656d6f81d9ee98c550579c853b16.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..9bf9d9eb42 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:12:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4f3a2fe61b --- /dev/null +++ b/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5104--4f332bd5d07cf69bdd53c63e79421aa172955e9b8306b2939268871471117b64.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_seg-manual.json deleted file mode 100644 index 5c86c75256..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:58:16" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.json deleted file mode 100644 index 01859567c7..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:34:52" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.nii.gz deleted file mode 100644 index ca40a6be49..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55516--04358771977190e88baf7a314a3686fc238fe3699918daf81741f60d88c58bf8.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..4d8c4e0914 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53899--adcd7f1235fa7826e8eaefae04eca4552324d3359771692abde28434c0312bab.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_seg-manual.nii.gz deleted file mode 100644 index d4a0eda7fe..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8362--06b5b931c36f0125b161e86639d03f6976050db891ea1ca83ab86b6f0980de3c.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b8fd03766a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--92c7a50233032654af8de335603e7716a63f04c208bc8e0876294fa7b366c8c5.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4b5839f121..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7528--041f772a02e41e8954331763d7dc69c5790c95065ffeff9e3a036ce1995e96b2.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f7bf9c3a1 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7488--75b9651db54a53a2fe0a4316500a7f15c4396876482e028f7335d32bc7580cd9.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8cdccba40a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--7615bee3b338b21190efbbe5eeea171756764311932253c22826f4d2e196370f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b3d0cd32a6..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7452--be58ab004516c9dc92b940d39761ad9e75cd6729f7cff039b4ac47eb4eeb6f05.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..381574e50b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7387--d88b1afdd5142f60e27b14b46a385dbdcc95ca76754f2dbf26444b94a82ce9e0.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..cbbfa1e713 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:58:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..e339e198ac --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:34:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..0758b04c86 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55538--e99369d4f808a509a49514096e3a7c8f32c97e9db7ba062a0a15b408736b02a8.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..455b86415e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..859f524bfb --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8383--0c8e808dcae360be67bb2aafb77be61b6d4907a5f88f4548ebc11c89d4144ffa.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..626cade51a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_seg-manual.json rename to derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..097350c6f4 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2437--ce52e74b37675cefbe7f298d182108a880b7245739c71601b76b4b23de3b0344.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_seg-manual.json deleted file mode 100644 index 56d5791283..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-02 15:52:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 154aecc4ea..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55238--568afcb217e24f492bbf80307857475188955ec72d98bef8a9f0f5a2218ea0b0.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fb9989d982 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53886--af30720e5660cc5c252f63420bd1451f3946b884661d9e0871e9188b8eb7f6d7.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.nii.gz deleted file mode 100644 index 6ff6b22ca7..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8180--514daf0c77777bf0e2b0eacdbcf65d55d196965091ea49deabad1c2993d6694e.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5943c6459c --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50627--73048e92b95d3f9a4aac91c2c431d25e333e21c9d52d739ecfb1de84f20a832f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e1e6578509..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:41:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 0f66ad51b1..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3457--11174b371be954299a4eb124781de080078f3c348bdd0afda0f38f3ac6cf4dc9.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ef6d249905 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:41:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c30e4c7d14 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14009--ba76948ae3bcb5a828db0df771523bdcf05195db32160bc9fbdc6359271d9b53.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..066bfc8806 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--8a5bb85f7509920708d05f1f5ac9880b7d4ac5b0917823f9e967bc9be2b8f75a.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 5eae31552f..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-06-30 17:26:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6c47b43f1b..0000000000 --- a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3472--37a3fb597c2e028d9300c57617d4a2b0a42b65e751a3ea9709edb76248a1b227.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8f30b27731 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-06-30 17:26:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3048e43668 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14000--bce390f13cbc458da7ec0c118c4fb702af4573235fdf75c08a1925fce360778f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..14fe3157bb --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-02 15:52:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..3ca7f81c55 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..d699fe1502 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55260--3b8002dc053284b955c92d0ad6859dff62476b32d78775c869cee7a291debdd1.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..455b86415e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c1227fe3eb --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8201--d24f9e7d283121091b5f18bf59d27168d3701485f9441b9681e055f62edca86b.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_seg.json 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b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aaff8b3ce2 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_seg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 67a7d471ef..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14778--65b19debcdce79e2724e439437ffe8d83949e15ec4a130ded5347a8e4d36a64d.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c3597908c --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s8300--0be574e06fc0e5415c047a68ce5cc516add7df2d1a213558eea45af9fb6a9cef.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_seg-manual.json deleted file mode 100644 index c77126f09d..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 10:54:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a1b00b8d23 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--451240f5f863b512a93e6b2d246f4c698a581b74c05047389d36368d797ebfca.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3b3662fcd4..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7385--1bd07956cbd1280818bbdfa817526512784c43ec148971ddc0c40479cabdf0b6.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..adb12fc9d0 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7344--96d639ba357e2b770352218a82af32b472084c4441d4ccdb39705117fe1e8caf.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8e00348653 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--25fbd4db01bf0fcd76454b23efed51c551682d004c407c7660c05946a6a7d064.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2c2a683625..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7384--2e6a732b4ea5474c228aa4183b911aaa4c612a8cf06c403412c27f1441061364.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ccbfdf5e96 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7342--4366de901c9bf8da6c814d64d316dcd101886ba5a75ec7b572a23430cfce2b1c.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..aa3840ec48 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..3ca7f81c55 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..adf27ce482 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14790--e951fc9cdf39e8b46906c3e213e361fcd15d584f8363a1f90882db69999659bf.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..455b86415e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7d3d1422d7 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8321--336c0af18a79c3ea4312a030f408ce99aea03df4aeba29aec50c5e6f405288ed.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b2e4f2a2b1 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 10:54:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5631eecb55 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2432--9cb0b5516cebd9af61abedb120d03518e2f15ba338db84c8842096addcd07d4b.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_seg-manual.json deleted file mode 100644 index ce3beb6c5f..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 10:42:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.nii.gz deleted file mode 100644 index d7624018dd..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54985--4ab7434e70dc5290e739a4012d36dab587d5a93edb380ed0a59a37d0b75c2ce9.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..66cfa51a6b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53895--203693fd621a9f8496598aa0e7b71eab6133f37d015cf65d54ee05ea68371336.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.json deleted file mode 100644 index 5c970e4973..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:15:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.nii.gz deleted file mode 100644 index 8db258e16d..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3907--364f30b2bdddcfd0308d6fdf5ed7dbb42113ecbf2f853943cd1aeecc5ff7bed2.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0c81bb6713 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--b2c2f45285373410db84f03e70deeee4638dd5597ef50b4b1bc8ee221def92dc.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index d88392a165..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 11:53:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3189ba10f7..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3458--6865728a7ab3bc35dda9f51f82cd6b43bbe48042d4f302e2d84c29cb0bfad693.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..817add420c --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 11:53:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bd6dd9003e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13912--d50bb0d1d90310b6782ebabb4bec30c4f9142101921332881c9b2bf65f704349.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fd08ac189f --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--54dec3f1e77b9e88bf1a01811d325e5dc055cea06502cf225b85099da17a1da9.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index dae228c3f8..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:50:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 23e0e192cc..0000000000 --- a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3420--ac742186be500b102b8345d6eeaf7ea9644d8110f12302d8e429df8f4d87cae6.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3df861398b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:50:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b07f3e892 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13862--6932e15aa0938534c926abe8d4019a53de4636ff0a20c61d207c19d517a6007f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7d3573204e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 10:42:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..9c9b407ca3 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55009--3b6930104eb0140411e54690f6fe6933f641d62e29d309684fe09efce98a247c.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..f5a8e1cc3f --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:15:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c6d5c80bb8 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15319--70eec24a04001c19c5284624f6a54e78c5561bf21765d2bcc9579177e807efd4.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..626cade51a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f2e40fa694 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2428--8a718e9140006fb1d19f20446ff0a3dd851d0e29ca22da31a3df20a07abcc40b.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_seg-manual.json deleted file mode 100644 index 2c91772445..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 10:44:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5e6f7c6d18 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53896--e6844230b78fbbf5cfcc1c5c3d2e9c6b4a091f471709b4c4a50f3e29080cffe6.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.json deleted file mode 100644 index 3e9c1e9ea9..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:20:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.nii.gz deleted file mode 100644 index 41d1ebbaab..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3869--6a3d8e69a53baf51deda27e5278754e00924a636c223217aecd04cf51d452a87.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-CSF_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6d5671cf84 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--e29fa29103fb4f7992525915f1c673697afc5fe10fc946857d62d701d80f1b2e.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e53bb2ad4b..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7370--125a7f862dfe53fe69414c936f380e1bd24da5996e5f2f440e57759d142bcd0c.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d21eff7859 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7327--f2e362407c3a852a1a0850ca5a06001af0880c5e7014341d2f9c3e26fde9b648.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b70327cf8e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50609--1bb0466cdaa343f4fa1226df0f76f344009f5e2197210981765e01668aba247e.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c7724a64cf..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7322--e1373d1faa8c35f574bcac4a9dab2d127f2c60166b9aaab9f0b0a2115f700d34.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb3fb051cb --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7240--c3b038421ba58fb9ad5be1e64565b463a483a50bf17a497a061edfd268b646b7.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a1baf42634 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 10:44:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6d930b87fb --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:20:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..16a32d9354 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15296--89e6d3f9bbb3306c83a9fa48dd5fa6474883b64fae5f6b40445f72ba7d8a7a6f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..626cade51a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-canal_seg.nii.gz 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b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1a71eb4226 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2437--c79d3e9c652828e9df27b3ef5fccdb6f0740f7dd1cd0d663641fdf41fe3df0c5.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_seg-manual.json deleted file mode 100644 index cdb55c6b73..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:31:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..355358a5e1 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53885--f18e0bbf9ef4dfbba5cd92df83481ea1c126b605ed1a1069d4c9141d4e943b2f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.nii.gz deleted file mode 100644 index 6f0cfc51de..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8173--004ccafd19ed81c21912fc77d222127dcf595087a731b494c068424947442c03.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-CSF_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-CSF_seg.json deleted file mode 100644 index 5d72cb8aaa..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-CSF_seg.json +++ /dev/null @@ -1,3 +0,0 @@ -{ - "author": "Charley Gros" -} diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ef9b83b9b9 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--fdc79d24dd071da5f4e554fdf91ea81d2ee9fec355c49272c1bf1e23e6ad48b5.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 67f3af68f2..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7334--d4c86c5424c48af92775e678b6defc6798fc7383c2d224d1a6b39cbcf863fdc5.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ba9d21cb50 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dde320d65a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7291--c25f44db6fb9e1d0e352ad321728cc2ee6deb94413c9e10056b76a9fda59fb18.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..01eecab0cc --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50612--3dd1501b71ee31c09646e25a2b31cb7da84014508817425a61da159f728c0688.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bcd8f28d3e..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:17:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 60930a2f8b..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3425--3657e585dd431c34d16492a5e742cb8426c1a53456abd0fead01f51a0eda7c05.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4f3842d955 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:17:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd7b25c04b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13893--6d633265cce5de004391f156f51b041952aceb5b13d7ec9306a4518826f80e3f.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e67b17bf9a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:31:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..455b86415e --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ee86bb797 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8194--41f9c8e13dbd9bee82299df816a8680346a5f241429a89235fda97058f375f6d.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-CSF_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-CSF_seg.json new file mode 100644 index 0000000000..2edede9801 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-CSF_seg.json @@ -0,0 +1,7 @@ +{ + "author": "Charley Gros", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-CSF_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-CSF_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_label-CSF_seg.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-CSF_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..626cade51a --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-canal_seg.json b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-canal_seg.json new file mode 100644 index 0000000000..9b765ae333 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-canal_seg.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "0.8x0.8x0.8" + }, + "GeneratedBy": [ + { + "Description": "Created from label-CSF_seg" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-canal_seg.nii.gz 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b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a750d361bc --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--5f506b994cfa30dc746931b271f9b11c3068f4226e781cf8253e899f9e8047fb.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_seg-manual.json deleted file mode 100644 index e66faac78a..0000000000 --- a/derivatives/labels/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_seg-manual.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_seg-manual.json deleted file mode 100644 index 85521747cd..0000000000 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:41:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..5977d7b828 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53881--6fcd4516f07f4d390e7ec5b8b82148f33182d6d2f369e2e66eb99b4026381688.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_seg-manual.nii.gz deleted file mode 100644 index 2482119fc6..0000000000 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8132--8e5a74a8e18d30418e68be27cbf90dbd7ce57699bd960b8b42bb5e5594816e8e.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..496f69efc9 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--38f1c119d256f3a818edb25292110e07664c9fcd632161a02e53e344e27a02a5.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9e46766328..0000000000 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7415--b90864e46f45fd11b7a01bfd7aab42f5e50e30ddcfc94673021f84f4859c876e.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a83b3b48b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7372--fdc44c9fc9ac853254bf171bb9c9e6da06717956b26f594099b1c3a87a663d11.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a38aa7bd0b --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--5bddd2740c3b71241b977ded9266547cc4c665d7a4841c057ea1df9f9d6890e9.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 14125b8516..0000000000 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:21:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c4e62249eb..0000000000 --- a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3407--4c936dc52acd436ef045ed3e6e52db5e773cc3585f156cb8e26e525b661e89e7.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..3c62d90f66 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:21:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5dcec1791 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13857--ce38e597be50d2ae36cd7252d2c385dc2e60bf9c1b2d48b5b60ffbfad0ee4e62.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..a30b651242 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:41:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c223c8387d --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8153--4074e30bcaaa1269681845f6e7179ac007453d1767949694bc62989644f98076.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_seg-manual.json b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_seg-manual.json rename to derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2f498ef063 --- /dev/null +++ b/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2424--e3ef46688950ef3217f12cdc968e60456b113f647a3d764168dd33369bf86bab.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_seg-manual.json deleted file mode 100644 index 7d591a50fd..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:35:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a583e40824 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105378--727a7056dd30c041541ab89ebf4f4be88014568ea2f48004ca7ea23384b4de92.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_seg-manual.nii.gz deleted file mode 100644 index 385db8aae1..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14924--8afb9d9e7fa157342c3157c6bea11a9194f34d21624d0d760d0cd8bca0e89432.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_seg-manual.json deleted file mode 100644 index 9812d65324..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:54:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d6489ff0d2 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--23cf49eefed06d2ededdec8d73ed1c9d14b3ab3d5f2276925c12db30e8b2fd0d.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 87ae3ecb1b..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7407--c0915b5e4151328b05b2f95119c13d78631c66b77a36590d746e3ae909942d9e.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d7f52a6a5b --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7373--dd1bf4a844a5af60733330fda9947cf589124f7b422bb045812141a8ce89feec.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b671385f82 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--21ea40994287339215f035f451f32cfb7794b4f978217417a1a07f514d238869.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d41a1add14..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:23:03" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index acebef1672..0000000000 --- a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3409--4f6a0defc619beeda5b2270a5706252073052f3d3c2b44f3da45f99392023a01.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..81ba260b25 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:23:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..874b7ce61f --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13868--9f4f2f40613258b26f6761a805c669129457fb79c59a9ba82bb74888e6fde1db.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..64521b88df --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:35:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9bb32a9d61 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14945--b548e313ba582665912eeb2a6e8ced5988cc5c020e744242cd63f146c42ec06e.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..79b599e935 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:54:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..77369281d2 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2196--55e9d107bc9d0edcf365b6c7554ea6c50e1e917c0597c1c5b91e492044740782.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_seg-manual.json deleted file mode 100644 index 47e2a9c472..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:43:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a932c4121d --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105369--2458b0d76057724c64ca0c6afb8414a74cf10bc63173bb4534c526d2b0a3ee7a.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_seg-manual.nii.gz deleted file mode 100644 index 62e1b96a30..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14738--81513e072db9d1f4e8a4ee6fced74dba8323ab47721aeca2c383cca9df2ed69b.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_seg-manual.json deleted file mode 100644 index a2a9454e46..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:13:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d2680c6182 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50635--cdb4deab03b1213f3bfd6b82d104d5fff85ec4e9923305fdf7d2b47865c9f94e.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 47d952e465..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7376--d179b654182b306ce0b6648f7aa2e5d85b410be910b73ac58a7069e8aa96a24f.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..83cbfacd7b --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7309--a6bbcd9eaff8ae425dc966619cd599159f30a5b1cdd3f5db39afa79cdcc61ff2.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..96ca37df22 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--14bc6a80a10808d12fd3e0c271fe93fdb072247b649c58164de49856d5ae03d9.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9bce7a7b0e..0000000000 --- a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7140--82a3eb09b901b30204a9bef6de154b1923fee8956b266a4b6c56e45bc2917140.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d048a949b6 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7128--0be5af67ce2ff22a28f95491b797b6f3efe1e2726c003005df779364f67b087f.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..7efc01688c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:43:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..144b53c4c8 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14759--16670e5da72b90b1719ef5f8ea0375898a0cd25783c63df9f7b89f4370d63e55.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c267e38f40 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:13:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..86156865ac --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2190--7a2b1832fc5392777a6a2e959c6cde37ee7b769e1ac9408dacfacb1374816de0.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_seg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 552a91eda6..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s107102--1588ebe5c110cb0e37b13b223c940e56a613ffbe2f37cdd22c44a4aeb251dfbf.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2187ca75f3 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105372--a340a8863488b46cc1b208bea9c28ec4a64535a1193418e2f6337f3832cd8b1d.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.nii.gz deleted file mode 100644 index 32de92a927..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14824--c976cee265bf4ca421e35e030a4634574d2472df0cdea0dc25150c588bb2cb7e.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1ca5efce1b --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--478a558dea8292f4bfdfebc8b565b3b545ead001731abc800159f393e8d668d6.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 1e5aec3ccf..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7365--b85c326f58ff8d3b3dbdc7306bb7e57aad336675291a1fdabd0d9f9494a8ba37.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..56280aa030 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7338--d34ed87437a4e2b994e7f910110944efee02fcf712fd7efdccde4634e3ece8b4.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7c1ea59602 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--afac40b253a026d700027bc20a5604ea50138b5be1fe91028c607aab1b1b658c.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index effe931090..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-08-03 15:59:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index aa147bd017..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3307--3106a113429aa0c496b6b11dca802e9932e33e8be7039f9830643cd3baf1472c.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e1d9ad4128 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-08-03 15:59:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f3c4e0ad04 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13630--b3d01b57a7b6a968b854b6952f1206cc3c918a2d53b27fad894f8eef3ea64f86.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0f1109f529 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..1fd63ec3a8 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s107124--54dbb9675cf9d0064a5d39322eec995a0b29be6e11f444b13f24092851903cd3.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..780c6dff1c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14845--78c76d01d6f99e4726669ce41ee156d33fc01d0189f4d83cf9157442824d47e6.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..124c4f31df --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2203--53a16d38b9ff9959892227ff3fec5762c9267f5d6477cb1244c144438c573043.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_seg-manual.json deleted file mode 100644 index a24a2336e4..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:45:31" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 22e8f3f5be..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s106970--80aa3e9b0d5323aea1ade659cfab895c63a69aa8015fd20d565899bdd9982f44.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9b75ba81aa --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105376--9c6a94e10db7afd4cb0376c79332181e1e9243d8631dd6d973fc7618a75352b7.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.nii.gz deleted file mode 100644 index 76c53743dc..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14672--a327a3f3aa4a9708ece9ac7eaf1649e51beb86b45c9181555daa211e28de9ce2.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7834852185 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--493c5db1302c3adc1d2b440e49eebcee2ced2e38e37772a06fe7a7db8c17db2c.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 75a8af67bc..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7285--0338565686c98cce9b51ff5ef0521b9aae469c3509a61d0719702ec960949a9f.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3b4c1c4a8e --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7247--3c15b49aaffc6b2179531b42b87f1c1fb6aaf324b6dbe2446395223b5a56706d.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..39f594d3e8 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--a52f4e1ac161bf4b4380e5e407242f6918ec48e8e44328db72139ae679a4b4ec.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index afc0f9d2b8..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:33:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 7f04399437..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3337--1c97b6fb2bb949b952e3f3f14c165cc9517d1e3f3dd6877d5889034b761e6454.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..9975837fe2 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:33:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4cdc916a1a --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13661--6d3c9014e7c05f2d1ea1eef230ab5215af9f99659f00c71b2a4e2fb878359f1e.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..bc279e0935 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:45:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..c72c1bafc1 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s106980--e1713867d6a8597ac1a8079b617d452c15db1cdf4c21da36b544b4efd3e3e0fe.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b5f172417d --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14693--a1d167dd69f70ded793b5ee21ebc21e3f41ad8e8a2957d5f0627b9d51593df30.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0248f98cd7 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2196--ba11b5df4b3e27e8e98f52131afd5cfd4b34937f864550afe8cff7bfa1c70246.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_seg-manual.json deleted file mode 100644 index a9adebc3db..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:55:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..74f18b34ed --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--9bcde0cddaf274c65630df517a70fe683e2fbf683d95dbd8fe78ab0a06f4db32.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.nii.gz deleted file mode 100644 index 8094292bd3..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14622--fda970efc51e200674fff587dfccdc3cbea20750c28f77700f6426df05d1593b.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_seg-manual.json deleted file mode 100644 index 54a5e281db..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:26:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9e35854e44 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--c32dc657e1bce3b6966e9128112a3d47478d1c31a8a13153b1205e77bbeb55b1.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 75bf8d368b..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7278--50fc5a5b97ec0c22cff0d8c5b2dcabad5b07c91e962bed8d5c987dc7fb672f7f.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..87f1565c0e --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7221--8942eb61e7c50e9967a0816ceac9105f10910b36704c91240eb37c3da8e449a6.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..82f59aefae --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50627--c0651094f76990af0ab67cf92cdc56779fd6c3fc16c9f3ba015463d282dfe747.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index f1955f7848..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:08:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ad4c112596..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3344--aea4a990d7cbe82575ef8b158e0224765d2f8111fce7c237097be0469195e197.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..54cfb0a4ee --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:08:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e66123030 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13724--ee060aecda079051dc421cd6c1c93ac607ebc128c131806c0e51552c7c3c0282.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..fa6b34c30c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:55:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fb2cb8b8d3 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14643--8e42a4829097af067af8fc81ef0655abfc53a5c9fa3374563071109cff90c908.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6660b2584d --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:26:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..98422b188e --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2183--4c688d346f7ccc66e3ea71c10dcd57ac0f7dcf6c34e2a76590476bb568911319.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_seg-manual.json deleted file mode 100644 index 42b3e3041b..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:20:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..10a10b3fa4 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105356--dab85b4c71e490e1f7df1d67e871ac5b73e2f7af9a2fab8ce4a3dd81e673ecc3.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.nii.gz deleted file mode 100644 index 77fb301769..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14762--3e1d2494c29568a8ef0b69c59bfc7a7e53e6741cc1cd75d6d36ae47819c8b7b6.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..da460deead --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--0bcbda86a344e305d4d308d7c03befad9fdfc2ab69ea92506f9d313c3a361f30.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a2eb9804d6..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 12:58:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 2e2d8d5284..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3380--2664a99378e0d67dd77329f0e28c72bb2e26cc6759ed4ec0df88d2862399e516.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..8550f9af3d --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 12:58:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..44b215e1e1 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13918--05d576febf27b0e46a6cde186fb613a6d552dfbee0f55ffb2b1cbbfc882b2c50.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..930fc55320 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50604--ec6bc5910ca351790cfb108a75894bc1b84d0f0f14b1ba3ba40efea2cf75be94.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 86bc85a2ef..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:39:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 417029cde3..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3304--ff40c12056de3a2757bfb2e604928b245e9f427e5efb712aaba8966bebad716c.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..bf4f7917ce --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:39:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ded181fb30 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13719--ada2626b19545bdaae5e68b263f0b322aa58b3f895c3321cb53930bfa323fcb5.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8f1c52dc38 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:20:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3d6ad38866 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14783--0a5417980981254bae20aa617f5de69ea8dc664f0314b2cb16c414bcdb781fbc.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b3edb79790 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2194--ad0e68ea79e3a3724424f08cf363594b0b4b4b5cf085f6cfc4e48d635ad14065.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_seg-manual.json deleted file mode 100644 index 6d7d730514..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:25:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..75b5d7f758 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105365--ada9c9daa3256d4134cc11bfee19e98807cda5b56d623265da76d79f47dc1fe0.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.nii.gz deleted file mode 100644 index fc6af8b051..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14808--2374e3bc41de3adf259a2013bc7f587b62593ccc4f300ebf9692870c00da0f40.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_labels-disc-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2fc6bd62e3 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--5da1645b347aabb900380872f74688e1aa3c70811962ccda874fd4e7e5bb5a61.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index b5bd18b141..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:15:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index a22a0c1300..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3413--1d60ee6fe132585ef74ccda18ba091c68c36a73cd57635ffba8a5d6478d85f88.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5f1fab1e3a --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:15:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c9f3d032d7 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14014--97cc8861b3ffa8563dd634d3c2e183c9baf87480159c3b38c8f98f7b3df14e86.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..eed90fcef1 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--957f7ac1e6c390ab2e0e2a4c98de1fe406c33f18c30f396aa052d83966378080.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index fcf90a57f9..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:12:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c1ca17d0a6..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3381--9c71ed4e8a600ec73d0e8b7f4eba2c3d596429b766a5c37a74ce0fba12fe2189.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a421ee5f0c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:12:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1aaba53b44 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13823--a07f120c72496ae354be26751399a4333e93d8cdb29b7e213c661ea881604bfa.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..216ed66f78 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:25:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0d18e106a6 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14829--34da99564d8bc48db56361454ca88d4344394be74540229ace4db0f4052819e5.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7673f9fe90 --- /dev/null +++ b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2182--0716b3f2e762e17da968c883b27e157a05e611c239d4f90e13948c4c38244e14.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_seg-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_seg-manual.json deleted file mode 100644 index 37631240db..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:49:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.nii.gz deleted file mode 100644 index f5a02bf29c..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14911--2637eca401a51a88461f31011cbf9c66e55e95c1a6155c3fc7d6a9ea1705dddd.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_seg-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index ebb6adf70b..0000000000 --- a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7563--c82a758e6e1615f6b9f4a1837db0aaa6e5d81dbea72d6480272dda2f04626b4a.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..7752e96514 --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2727b03559 --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7532--05b709bb8e2c749570dd384e4e9ba4618f5458f3ff0a98a3a5a2c17f0fce98df.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..59e901c7c8 --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:49:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e481b1fc6c --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..224c9b3396 --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14932--df5a8f56576cf6c7b563a7d66efcf91dee051109ad8c1fb1f94cb5d1afd62616.nii.gz diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..3834a7469f --- /dev/null +++ b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc01/anat/sub-ubc01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc01/anat/sub-ubc01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_seg-manual.json b/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_seg-manual.json rename to derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_seg-manual.json deleted file mode 100644 index a16370c08d..0000000000 --- a/derivatives/labels/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_seg-manual.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_seg-manual.json deleted file mode 100644 index e49a806103..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1f2e5d98df --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105368--120e72ab38f704b9458bd6db1c2037428795814e28bdf0904015718f3a96c637.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_seg-manual.nii.gz deleted file mode 100644 index db5280a486..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14832--6eb3000bbfdcf41646501fd8bc2c29fdec85da560e878381d4b1a886a4555320.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_seg-manual.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_seg-manual.json deleted file mode 100644 index 7528c83fed..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 09:35:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fd0e285a95 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--c3b2a8158c1cd594bcd73adfed4a7bb372f6b38ed7d8c42764e2625d1d2e9722.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index abea432bdf..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:09:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f682c1829c..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3499--5efe4671d620db99c2c20620f8e4cfb9845a8aad401b6b6828c4e121c4e75dc6.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..20ef49038d --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:09:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dd860d41b1 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14059--e2f3e41576b7bf85a10db11a9a523f7173246e06ed525308b0c4e5501eddea2e.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..da9c8b17cd --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50605--23c9c8a672ffde83830e33d1232492d499c300ad4a17361f971f7769a9ddf18a.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0d2a59aa9c..0000000000 --- a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7226--9a0991d595139e048509e9eda37aa0f14610bf8d5ea7802dbec814ee7f447353.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c407d26d40 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7207--985a161fe181cd0f19693ab456e7acd165f38ed2113b702661c296ffb42ebdeb.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0d11bd134f --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cdcffc41fa --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14853--bbb01350477b63db6163aede25edaef331c967eaed77a3043e4a46a5f14295a1.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..e9e03a9e8c --- /dev/null +++ b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 09:35:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_seg-manual.json b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_T2star_seg-manual.json rename to derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..cdcfdcc307 --- /dev/null +++ b/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2420--8aa863da0eea4717e96df8fd2f020b98f851146736f3c3cae092b90a3edbbd98.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_seg-manual.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_seg-manual.json deleted file mode 100644 index 143c5656be..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:28:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aadc285cab --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--5c0eb6726926c48afd9079a7994f0940e1a2bb6903bb996e62e0c7f61c62eec7.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_seg-manual.nii.gz deleted file mode 100644 index 70b88e29ba..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14717--55228173d057df60b719e17358cb200282c9c1d9f628bed02ce4a2f4bf3ed29b.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_seg-manual.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_seg-manual.json deleted file mode 100644 index ff1a6622cd..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:26:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..30d0087574 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50606--ac4930cd151b1517a828717517e2fdadd814b252dc9d988da7d2889b572b0a14.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7a727c32c4..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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+1 @@ +/annex/objects/SHA256E-s7412--8fe147edaa155537dddf99d033561db9ab07f3e6c5b86f0d9a0b4923ed43cb6f.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..39dc4946b9 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--75306d8b051372ee7698ddec5d58310b020bba911bf424fc71e0db7953545aa9.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 90e8bc286f..0000000000 --- a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7334--63f86e765d48f22243d32cb082a10ef598612328c8e2f34ff969e6c176e5a1ae.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..217f7797ff --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7297--8db6fcd7dcabef80bb5a2920769558712a9cb422145462c8ac6ac25fb7ceb76b.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e35bc56528 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:28:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5314638096 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14738--c3b1eca86e2d32e7fbbba24efbb9db88cbe0b5ecc4be3bca3214c50d65502d8f.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..d8cad46288 --- /dev/null +++ b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-03 15:26:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a652de1426 --- /dev/null +++ b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2415--ecff707383dc8acecc960acd6a67ed97190e21e77db4bb7e5f18a2062670595f.nii.gz diff --git a/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_seg-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_seg-manual.json deleted file mode 100644 index b8e21d6fd4..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:39:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8841055a54 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105354--3a94916a36b4b8a08cf9b48a25ea77374ea7ca142b507c6aab0509752d88b685.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.nii.gz deleted file mode 100644 index 43f71e6bf9..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14767--21e290d6bf8ae587a0eb808658f3927de899102d2db5b5afb43a3147e9b5bd85.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_seg-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_seg-manual.json deleted file mode 100644 index 3fc50d768d..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:08:00" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e8706933c8 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50598--4478955332953c4b933d72ca4c22edac4f7f2d80e822eadc5cb5590796edc9df.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e8e47f3126..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:28:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index c4c31fb8ab..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3482--57771b37a3757b94f40044de782a6916a737c7d823373d89ef791c8ad7d6dd76.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..841072ca30 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:28:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8c37292910 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14104--c6314127c814e44465050572d27d8e6d892304680b5e249d22ded3caf652ed5d.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz 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deleted file mode 100644 index 10a2181ffa..0000000000 --- a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7323--4583724ecf28265e50a7fb4db32a477d9edd9fd594503a0e88f1a3bfc7a34387.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz 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b/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_seg.nii.gz 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b/derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc04/anat/sub-ubc04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..906b9a1254 --- /dev/null +++ b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2418--40ca077a6059ca0401d391a76562f3f2a27ec5abcc45b4a9bf4093db1d8866b2.nii.gz diff --git a/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_seg-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_seg-manual.json deleted file mode 100644 index 7841effbae..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:12:29" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..12f8ca6405 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105359--f78d05e0c1698cdb3bcadb20b0d87e87c469dcabe2a275cff5462200a188b85a.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.nii.gz deleted file mode 100644 index 581d179fa3..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14981--784059ddb1cd5d5fa004642bbe334bda7ab5931515c97a705a1f1e2ba2f24a1e.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_seg-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_seg-manual.json deleted file mode 100644 index d14f7df3a9..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 09:38:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fb4a40d3b8 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--0724d39975e21a433ea714a9f976839adeaf3640462600ae8b2135fcb0e4b040.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 3cdd11f82b..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:12:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4b09d77d13..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3535--a18c334a73c46a81081b6d289b0ed73e845b648f5adcad11dda88bc1cfe2f74d.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..13c34bedbc --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:12:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..33dd9f22a3 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14090--7626a4d689188c3f77fdab4e1c215fffba216ddc7dee9ff2abce1c7887910f95.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c229dd6c10 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50616--6a82878b8fe0a85077100a72805341c41e699250ef40b4b1390a9202685dc210.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 0909239f58..0000000000 --- a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7265--34497cd40d1988ed325af05e8a2b9d667ca24d668ea89539c9a0da4efc7db219.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..71c1c7f59f --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7303--2ab6f95e4a37019be11f2351dbc891d5bef77fa25fb2352c8bdd38d781fee6b9.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..87f02aa7c8 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:12:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7d874e0be0 --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15002--9d32df41cc7a7f792792f9a8ce5b9a27078b6c9b317ee078a40d35c6360978a0.nii.gz diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..255f524edb --- /dev/null +++ b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 09:38:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc05/anat/sub-ubc05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_seg-manual.json b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_T2star_seg-manual.json rename to derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1a702b96bb --- /dev/null +++ b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2415--56ff2785c44e9c644aded63e07cfa3fe4931e5292553c7c145778938fb4626ee.nii.gz diff --git a/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_labels-disc-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_seg-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_seg-manual.json deleted file mode 100644 index d1c5be764b..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:03:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e1a49a0735 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105369--25a288ab07290c9061ada362e124775e7d192bf911a7a425e689ccd0d9208d7e.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.nii.gz deleted file mode 100644 index b82b13654a..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14776--69ebaaa42242486c22a287d70d116067eb032f8992facb00b6bef0336ea96e52.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_labels-disc-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_seg-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_seg-manual.json deleted file mode 100644 index 0d2b7b85d8..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:23:56" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ea16328704 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8324a42aee --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7412--840ff5524a2971e28c2379489eab7efcd410a832926b9a5d4861e27f88dc89af.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..845b4d1a6e --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50596--fd58152b357a1106ccbefd741e563b8129b421cacfcd034501fff68450c73ed8.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ec22306874..0000000000 --- a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7340--74dff28de65e95aeed6b8d9500dd8560d941466a309cea13bbe5eccdd496c726.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8c399bc2c4 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--8b124e7536d1323d66a6ddefb7d01261aad4bf64b3d3da6f11b046ff1f6b8e75.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..59b08caaac --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:03:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81b0dbe968 --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14797--9f552dc9cdcaa11ae166cdd1e85f7343ad612745483e440cb5889a36af5e962f.nii.gz diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ee781508fe --- /dev/null +++ b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:23:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc06/anat/sub-ubc06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..37bb4b5cb5 --- /dev/null +++ b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--a337480efe9bc1e8acbc0bb5835cf6352f82442267b732d153d1a002da110211.nii.gz diff --git a/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_seg-manual.json deleted file mode 100644 index 0e6fe5d06f..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:54:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.nii.gz deleted file mode 100644 index 2aa39d1220..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14993--e1aaf14158003587bf21c298c00eca68ffa3bbd08e809fc25315a8f8b3ace61f.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_seg-manual.json deleted file mode 100644 index 5ad0cc317e..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:23:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index b7d0bccbf2..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7413--8f7ad08899fd4c2523d829db0fcbfce90f5b53a3e3fe26bb14c9085138b218e4.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..694315afbd --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7331--17bd6f095346f19fcdcb383a995aae6421857617bbf398e92a32f0c509f3680d.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 472602876d..0000000000 --- a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7259--3c3f6059994484db02e95c0558925c9da72b3f8de191f6658829da106c1f9db3.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8788c0b793 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7265--d28463efb54e6a51c3f3c92de14f985d78cfb5a5fbefaa1c7625c416bf63bdcb.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..6ed50894a0 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:54:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..08eeb21e93 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..165b06c3a2 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15014--1b41bc15046fb01e9e28ea16a444aeaf845e04d2a7a3d75e1d40a1389f5b6a52.nii.gz diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ae4b2bf006 --- /dev/null +++ b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-03 15:23:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis01/anat/sub-ucdavis01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_seg-manual.json deleted file mode 100644 index 4b50fb25ae..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:43:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.json deleted file mode 100644 index aae16f2314..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:05:54" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.nii.gz deleted file mode 100644 index c8a1a656a9..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6819--87006ca9f907bd4c5a91a6918359d41f2296c7fc7227f9511c0459af50016454.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_seg-manual.json deleted file mode 100644 index bf55280978..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 08:43:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d9e08555a2..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7382--4b9859aca26b05680920fb24d7a2e39be7a0a226b6195f1d85cd5096bb9db1a8.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81a60a4881 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7352--0bef9deffcb4f7a71adb8e3526c6355326a8cd0a7ac8d75f33e37c5e25eed3ed.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bc1dd29e4f..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:22" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e34c5cf168..0000000000 --- a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7305--a0d92d8a705db35de48a05c64e204a6124705dd69855bc87106ae789a5f54d3f.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f81a0f524 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2f0eea26f --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7263--1283a7ba868f396d4895b9051b07bf708b64cafdd065090578ac73bf0332edcb.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d0c5f4d497 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:43:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e10a9f60b4 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:05:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a3c5ead767 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28402--92a86ec8bb9e3a4a54766823ae690cd3de11451915c60b8d9c4150b35dcfb786.nii.gz diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..f1dc95eb83 --- /dev/null +++ b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 08:43:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis02/anat/sub-ucdavis02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.json deleted file mode 100644 index e5aabc2a28..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 14:33:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.nii.gz deleted file mode 100644 index 543899dccd..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T1w_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s34729--872d073cbd049870d63343e9be01de9bed1efc8d1371b622e902203cb393a8a4.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.json deleted file mode 100644 index 2685be9a2f..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-17 15:13:19" -} diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.nii.gz deleted file mode 100644 index 91c346d5bb..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15133--f2b6c5e2903a97117acab7a33ad5b655ac68b9621397568e8b8091e5683b9fc4.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2685be9a2f..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-17 15:13:19" -} diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 78fba933ae..0000000000 --- a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3500--dddde56ba40d9b375f61f7244452d4b82f38710958fd4eba848908cb7f8c3bc6.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..09edf47de8 --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-17 15:13:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8494172b7d --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14187--f23b1a7cec51b88a005b1e69d9c9e776e78740bab0676114ade4f4953ac9f91b.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..93edbb6b2c --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 14:33:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e699b36c38 --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T1w_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s147656--1152e6ca47b2e65f066d76f8c5ea4a202315e83586c9ecdb4ecba5a7d426c5e3.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..859c38c841 --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-17 15:13:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..233ff359b6 --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15154--142423153f845ec376c5ce13c7c41d52073cf4ca9da861425b1e832ea2937d90.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..7ba581a59a --- /dev/null +++ b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-03 15:13:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucdavis03/anat/sub-ucdavis03_T2w_seg-manual.json rename to derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_seg-manual.json deleted file mode 100644 index cb31050867..0000000000 --- a/derivatives/labels/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:13:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2star_seg-manual.nii.gz deleted file mode 100644 index dd3059ef40..0000000000 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14843--8673ae1c62b4368606d34fb8c14222395240581cff6793d467f73b1ae83540eb.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_seg-manual.json deleted file mode 100644 index 1892bae272..0000000000 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:46:11" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 25bbde4773..0000000000 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7329--200e6ee617a0a177f771446d628cae7def0b148ff8dec80f76483411d8df316a.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50b3cf7614 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7266--cb7b4509a40b545f30ed7ee313032100799b154686c06d87116127a3191eed20.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index cea5519b5f..0000000000 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:15:14" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 711aa15c01..0000000000 --- a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3317--65850acbe3c96f02b3aacf8bb9c71eef0b28d8ba296d9e0b7a6b1f69f8862f30.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..0b83a5e5aa --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:15:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..12efc35c20 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13696--697e69782df32b7ecbab1e796a81f15a2b232c3e2396da442ece10b0a33d1a69.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d7f8366234 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..795de5af56 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..268d1ece30 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14864--56aa0bed968b0538bc0c7ea0fd9da5cd88e9f25c4a9009ca80aae56f3c34da5a.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..53d43c7a58 --- /dev/null +++ b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:46:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_seg-manual.json deleted file mode 100644 index b12e4506c9..0000000000 --- a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:33:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2star_seg-manual.nii.gz deleted file mode 100644 index b03522daf3..0000000000 --- a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14804--41c31972b922273704a7cce9dcdf429414aece26f93500f5cf7a770e8d833569.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 337b200d62..0000000000 --- a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7274--1b1dea7a04ab96655c47e20a02a33f9381ccf9415fdc6cbb6879296a85af23fe.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2d6d4af82 --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7252--ac50756f0b2a734102a153ec20c70ee0a7b1b697758a117aee7966266a725597.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b7c265890f --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:33:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..795de5af56 --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..114aa519a1 --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14825--154e34c412d3ae8db4ba672408a360101843c549d2bf75ae38c91d476317828d.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0e9e6a8851 --- /dev/null +++ b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T1w_seg-manual.json rename to derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_seg-manual.json deleted file mode 100644 index f5f5415a65..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:39:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.json deleted file mode 100644 index 08a9a1f914..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:57:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.nii.gz deleted file mode 100644 index e6e6f8e740..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14827--119d54f09f8b7e6ccb90341e5a601d57ae38de6975d6634cf34d0ee613dcc8d8.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_seg-manual.json deleted file mode 100644 index 08a9a1f914..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:57:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 08a9a1f914..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:57:47" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d80b09b145..0000000000 --- a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7368--6c515f03139401bcf10bdbd90ffd5ae7f70152b976a6cc9b9ca4813852f80a0d.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c5ba52cc38 --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:57:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..db75e50515 --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7329--3e1b67ff203fd9a707cba22a1bf2324decaf5b8fec923ebab7077acea841acd3.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0076cae0e3 --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:39:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b6ac8b31ff --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:57:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4f4d7a889 --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14848--04059f7182c856ccb546d25c00f94617c86aa8b6978a4e882dbb028f870890ac.nii.gz diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..c74f41fcf3 --- /dev/null +++ b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:57:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis06/anat/sub-ucdavis06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_seg-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_seg-manual.json deleted file mode 100644 index 45d19061e0..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 11:46:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.json deleted file mode 100644 index 882641a0ff..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-18 13:30:48" -} diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.nii.gz deleted file mode 100644 index dea357b76a..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s15047--55b40c4cb349cf5c01c6e3bcf21420104e5188f0496690d0be14122e4e512e67.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_seg-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_seg-manual.json deleted file mode 100644 index b4a483cf20..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 13:30:48" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 882641a0ff..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-08-18 13:30:48" -} diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 7b4616ae98..0000000000 --- a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7458--900d71f1826dd2dc8b54cd0669a1e8e22a05eb3bc10a68490f5a0070f66ac2ee.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..72a0c1e921 --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-18 13:30:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fbd6c9333d --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7442--36ae386f6e7b60231055bbd3a867c5fbb3e171a54965ed63ead575a3914d149a.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..62b6eb9900 --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 11:46:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..87e393efd3 --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-08-18 13:30:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef80645bad --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15068--a00c45de84472f8a5ae8ab077e5263ed379552baf3eadaf688b7785577fba388.nii.gz diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..2d7cfb8e36 --- /dev/null +++ b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 13:30:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucdavis07/anat/sub-ucdavis07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_seg-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_seg-manual.json deleted file mode 100644 index a25872b333..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:55:28" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a8caaa0d77 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53879--0e64bfe37c5b21aa28d243363396889e4cf2c5bb4296634dbeeee109cb07153c.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.nii.gz deleted file mode 100644 index ac1d7fe402..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8204--90ac62999551c0780fb395477b119d83411559a60f041b548c57aa089fb70556.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_seg-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6ab0316da0 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--9071c30988bf5d8ff1790b6362341ac386ca542abe1197f1a7228ac7a76fc483.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index ca6c5d7df5..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7389--b89e687a4ce0311540a26b0599cc1be2ffb8ad6c1679151652c71add2e18929a.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f600437bcc --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7355--13484c00792d3060ec8355ce23b31d48c222cc9f17df2da94a9d326b97ac5c0a.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b9efa07d71 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--d7b302c3f9af02705fb7cf30c91555d2cd472231a86fb09b12f593b53f4ced7b.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d674614b91..0000000000 --- a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7355--86f94e75c6874a0c3d51989b6ad4664cfb53e79a83874a391565cbd865cf364e.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..362efc9011 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7324--e06baa762bdf76e3a0273d322a12a96287edd87a8705bdf9229dadb47e6e70eb.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5386b6a5e6 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:55:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..795de5af56 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfdb683c8c --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8225--188cfa6628f4b53ea06fb2f132eaa75c3e86fb7bab0f0a1b4463ddc102c12f05.nii.gz diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0e9e6a8851 --- /dev/null +++ b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl01/anat/sub-ucl01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2star_seg-manual.json b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_T2star_seg-manual.json rename to derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..39009e6ffb --- /dev/null +++ b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2413--7090b89963ab5c0b620ff71551956abf8652b644764e4d90dafeb00de19db82e.nii.gz diff --git a/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_seg-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_seg-manual.json deleted file mode 100644 index a95ca26cff..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:42:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..53bfb43373 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53882--c60bce1b9a5bee703cfbae91129f20ac8b6a0579b4aa308a1820ba37ee1cc3dc.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.nii.gz deleted file mode 100644 index 1e307d9c04..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8416--18990542bbdfb8435343811ff5f19a903a1e51639164367f047625604a7b05ec.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_seg-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c8756e51c --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--2cb1fdea5f3064b0a2461a57358988c7893fecedbf1c6b2f4b5e5b67318ab898.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5d37299f93..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7482--ab4523e1b94fe898d9f8edc022d952546ab7d6cebd6580c189ae2318d7c44262.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..20396aa60c --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7462--e87722f8c431683e535f3020876e3b7e2d916bed017ed68f4248c6149819dfb4.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6b11cb0afe --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50613--58e9a04c8a3ea9d674a4df2862c49e1cfc29d70b1c8aa10d0bf329c685de0b62.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 21e035a8b2..0000000000 --- a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7421--d759a553851bf83220bf98c5fbe5972b203cbe8adc7917b7f6e32395ff8576b7.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c94e20c77b --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7397--6e8d3e23c3e79916a4474d33b8545accdb397231279ccad47bff948372130f38.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b2a7b45d88 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:42:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..795de5af56 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7e9b719224 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8437--b5fe5a3645993e2f1b3de5d9a217ab6ee4a8c7fc24f185f74ff16c9a64f29d6d.nii.gz diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..0e9e6a8851 --- /dev/null +++ b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl02/anat/sub-ucl02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucdavis04/anat/sub-ucdavis04_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c12231e64c --- /dev/null +++ b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2420--2cb79407ac789941b2d7ef4b98b58edf1063df3fd49492320e78fa1c7cab9abe.nii.gz diff --git a/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_seg-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_seg-manual.json deleted file mode 100644 index c8a0dbfa8c..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:47:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c5b9fae076 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53880--2e239488d9e6c0bae6542cec95070fcf43906e8a471aee2bee1c85a4633b56f6.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.nii.gz deleted file mode 100644 index d2759acf48..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8224--8f299677f5db4cd7976b352e89e527983051b38a3b1ebe71590e13b9b3f3398b.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_seg-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_seg-manual.json deleted file mode 100644 index bd03db4ccf..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 11:01:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..43eff28c1e --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--5fd7f096b7e6ee2194b8d31df0b44493bdc3bfda4acc75c84420fbb106c266bc.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d403c3b69c..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7362--4c87e1baf3bcae135e3ceb32244a0cdd3c12f129697d5e8be36a5fc12f4625c8.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..de641662ba --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7336--f36455804fe60aa8008964583048018c10c5c592609fc3311eae3d1aaff7f9dc.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c82ac2c220 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50610--9d7e61ba06c27a941a659d4e07b9b9360b758d5ce5758c989f5b760fc27ab981.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index ba05548765..0000000000 --- a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7393--1b0aa7fd1914759e03e63eb8a1b21b743a0a74ab876040b7ad0b86dcb320ada3.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d408447412 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7369--805bd8929b3f23c44ff7f738c25a01088961d132ecc33bc4dee3d24df7362331.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..56a3727d6c --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:47:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..795de5af56 --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9409f7072d --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8245--63cd2e62437fdfe20188c863a790e654453529b248bc2245166566d2306f7c79.nii.gz diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..ed4cc220df --- /dev/null +++ b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 11:01:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl03/anat/sub-ucl03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2star_seg-manual.json b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucdavis05/anat/sub-ucdavis05_T2star_seg-manual.json rename to derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d5001d5fe8 --- /dev/null +++ b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2411--62461e10627e01142513d64d1c4d6b21fb8624befb42372d4fbdf30230e3cbce.nii.gz diff --git a/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_seg-manual.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_seg-manual.json deleted file mode 100644 index 5bfe7a1aaa..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-02 15:50:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0581779d10 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53887--d9015e2ed7a46268cd197a4206f9dae5c97c5e504cfebd0a2334c672a185658a.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_seg-manual.nii.gz deleted file mode 100644 index 16713f8ad7..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8154--8273f7d940992889c25bf4177a3756ae54bdc1c64d75ce85143479c7c2d9db7a.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_seg-manual.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_seg-manual.json deleted file mode 100644 index a577264e07..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 10:52:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2e6f7d7701 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--00e5afd8fd1e5bd03cf786f27815b21539162603186fcef793a028757c2b931d.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2fc9e6c103..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index ca15236575..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7395--96e38e658366a8fb3ffe2b42957bf0facb7bda087c5e3ca6d1302d1b0a74348e.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..5813c12ebe --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4888dce6b4 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7370--60d9b051dcdec03b330246bd7909c1b5c96c29149b5894b71db68a38c16f1b67.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e6768e952d --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--c465db6f1e8764065f4ea27b71b48e07311036cbae82c8c7f2816f310fc62332.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index b2c8c3c918..0000000000 --- a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7325--75596df3d89f5473464ddc763357dd0805b5c46a3905ba21b428899f8206dfb0.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df9ac8cb9f --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7301--9920a9d27d5d6f16eb0d98b242fa8470e81bd6c629ed33e5cc33bc3c655cd703.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e72eab2280 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-02 15:50:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ca6c1b5bf5 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8175--0a6bb2f6e05654d0c19a71d79a6795d3d29b0dd0daa02647d6dff576e1e4e5a4.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..52fa086719 --- /dev/null +++ b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 10:52:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_seg-manual.json b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_T2star_seg-manual.json rename to derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..60f6565d01 --- /dev/null +++ b/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2409--b840c1cfef85653f9b105ba46c123a2b717ba60e7835e74cdee300f0115e2ad9.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_seg-manual.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_seg-manual.json deleted file mode 100644 index abbfdb4682..0000000000 --- a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-03 15:02:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9c830d4c75 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53879--f446ffa8e1517af11d6d05ab3dbb2bfa220b0497db43746b982101503bee143f.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_seg-manual.nii.gz deleted file mode 100644 index 8115a24ecb..0000000000 --- a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8328--75f808e04d7a39761dcc781cce922694e16a44c422026796257a4c18bc588f0d.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_seg-manual.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_seg-manual.json deleted file mode 100644 index c156626ce1..0000000000 --- a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:12:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..bd9ecfc380 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50611--940b0089f25c120da7d7509c613a66b0abfd071c3f73d1db34c2ed0faa94adaa.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index e1f27f545b..0000000000 --- a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7434--31f2d502079c0b8f310c681cb8aa598c08b88c0fe8ce999af9ded68e15282856.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5de26cadb4 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7404--e90f5b19a78a89886466405e07fdb0aab2dc77d88796bdaeea83b22c4b2ae0c1.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b0ddc303fe --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--a63cfd06a22d055480930f17602b46d19e9f3390556a46bd99d33604be0be99b.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d1d6ab2953..0000000000 --- a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7332--d222085c9b717c47cd9d12dbc4f93d122686bd2efe44f6e0a0a35b81dd5babf1.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ca5333e33f --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--b826abb494e352b34e0ada35400147158602208449b9d3c3dcfef6a5767665df.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..8443087dd0 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-03 15:02:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7dd743f636 --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8349--dabec21d770d9ba86a8dcf062bd29a2e2a928a63c03cf79c9b555cc98fa1477b.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..928cbcb16f --- /dev/null +++ b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:12:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06552ed511 --- /dev/null +++ b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2420--44c7e9ff1aeb385f3751d7dfa22594b8e9c386dc8366eaed09530b8ad578d5ae.nii.gz diff --git a/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_labels-disc-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_seg-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_seg-manual.json deleted file mode 100644 index 383b157c89..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:17:17" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0437e68d8c --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53881--debd946a96a00ff09145d9c5a7e2107e73e0ed7652cd63b14e14252483ffab6e.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.nii.gz deleted file mode 100644 index d56fc6ca52..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8139--3f1ed076ec9f6724b59c6c901a3f9c12e199e3c12305b286e327f180c7ed997b.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_labels-disc-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_seg-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_seg-manual.json deleted file mode 100644 index 9e810a36a3..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:23:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..236acc2545 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50618--2275c9409cc0275840298c6df710284de6b96063fcbab70b403ffe581c2aeee0.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 5bbd9dc406..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7430--b87c937d3dfd9262fd32acce122db5946ec15d68d9ca87dfa68ad303f3978785.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..afd5eed884 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7403--42eb2a27631b0b19adcb6c75656a5e25d88da8b826ad105e037d950119ecb8d7.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..57776c3fa2 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50617--bfb74ca9e2d9746bd212dedc6309dfdec399b90f2f00b99073a44dc6dff5192e.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9a38a2215a..0000000000 --- a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7295--cc001aceca46fa1edba2ef52d2898882af39f9d2c8e56e5e309791a0d15ace34.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5d4a555435 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7268--040389496295166d48ba14bec797afb5eb81ffaa1bf794a55ddb89db51a0e1ab.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..9f4a548de5 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:17:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..041f7f80e4 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8160--06fb38e4c9616ca359cb0dd9811f8e01fa4e5886d6e1f9872bf4370044b52d86.nii.gz diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..5fba59dd77 --- /dev/null +++ b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:23:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl06/anat/sub-ucl06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f247b854c0 --- /dev/null +++ b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2416--be76895a840c6f70129067d24dc6cde4ff010327ac0725fae4817abf9865f025.nii.gz diff --git a/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf01/anat/sub-unf01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf01/anat/sub-unf01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_seg-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_seg-manual.json deleted file mode 100644 index ca4a83e73b..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:26:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d4dd94e6f0 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105341--68fea8b79cfbc79877e0664afa2b363f96b4fa862d2628e86981bda9b0109b50.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.nii.gz deleted file mode 100644 index 3f02b2ba65..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14919--fd58cc0e0843f486c4096811c85580fe56540e1b720f4e4f3cc0ad07062c6d11.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf01/anat/sub-unf01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf01/anat/sub-unf01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_seg-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_seg-manual.json deleted file mode 100644 index 207e11078c..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:07:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c60ff1068e --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50621--3df676babda74047e89f814f6c71c89f02889caa08c79f76716528419000404a.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 428c543c68..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7448--de10a7c8addc09a114adf479ef074f986cc45b59ac7758b65e755bf87078e8f3.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b143e34435 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7409--f755e332885e22f7249c3d20b3edc1696aef35af6526a7888850d7af0c752f4d.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9475137b04 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--faef4130d66eb48570e8bbd3018b4b3d190bd965990d8813c28b49e753becd0e.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6ec7fed27d..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 12:13:59" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9a95953ba3..0000000000 --- a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3419--5c473c0662ef25675d6dfa63c3ee28b9cdb3873f09d8ca70519c72350b94e11f.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..05c5c742ac --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 12:13:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2b5796796 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13892--e9130543feb2e22902e5bbc60256c96846f6178ee311bc38024f8fc8399936e9.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..5feae8537e --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:26:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..be8654ee6a --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14940--1fa4345d51ac1033331d7a5bdb0de90b7e57fd608091d78eb0d734fb7d93a61a.nii.gz diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6ab646b730 --- /dev/null +++ b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:07:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/anat/sub-unf01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf01/anat/sub-unf01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_seg-manual.json b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_T2star_seg-manual.json rename to derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ad4ac07c9e --- /dev/null +++ b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2084--c56e3badcb6805847f6166d410f4364254eac86773a14b176b41d74a37a42af1.nii.gz diff --git a/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf01/dwi/sub-unf01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf02/anat/sub-unf02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf02/anat/sub-unf02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.json deleted file mode 100644 index 833854c193..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:35:02" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..85b16c41e3 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--aa104022b4e1cfa418d4ce21a3b8cb2cab1f296976f208e5d26c0458310809f1.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.nii.gz deleted file mode 100644 index e5b80da61a..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14803--7f642af097002333bc0456a056a5039836265d1251c8e91096c4060c90fa079a.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf02/anat/sub-unf02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf02/anat/sub-unf02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.json deleted file mode 100644 index d258103b9d..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:09:49" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a93bf3b97d --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a8a133ec67 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7325--36001361010b7ba169041e11385666b8d368ed902e7b5b667cfe4ac7ba2291de.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..802db67784 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--308fe4d81436e0687902b1569e17724e80d2c387fb26c22d7851cd233bcadbee.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 179905c609..0000000000 --- a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7223--80800fe5488adf20e97f4d98295a8c9ffc46a3979f5717f767ef38851bf0f66f.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..556443b49e --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7189--03edcfee3c9eed672c7842c5b9a47243f1700ac39d25993a73141a87c66afba5.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e1a612548b --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:35:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a886d4692e --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14824--23d9325020ecf4aa045211f24d2b1767447cc99fb1e0695a74323a817b90575c.nii.gz diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..6bd6f474bc --- /dev/null +++ b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:09:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.nii.gz b/derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf02/anat/sub-unf02_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3b21fd3f2d --- /dev/null +++ b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2091--96875eec841f082964d23eb66f7697bcc55fb95dd88bbdccadc56909f8a4683a.nii.gz diff --git a/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf02/dwi/sub-unf02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf03/anat/sub-unf03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf03/anat/sub-unf03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.json deleted file mode 100644 index 55cc939c04..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:43:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8a157ba96f --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--8278c2cd5a78eee116028652b9b377b680417ce3118f33607546ab8e686948b1.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.nii.gz deleted file mode 100644 index ed63bdb5f2..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14680--de592907deaaaff97170bd75e442fe95efa90758062d6be05408fa93a4258081.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf03/anat/sub-unf03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.json deleted file mode 100644 index ecf2ddcc94..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:10:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..36a40fc8ea --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50600--8d5495e20e0706d9c2d4fa227eabbef65752d05dc1e33775fb4e1d7b1e87e1c6.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d6244627c6..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7210--b7ccd4c8511914185c742d29bb0220f4be49e0fc7c4328d63f81e6ca637ac885.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2f4b0aaa7f --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5059c06e1c --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7231--2445f031eaae479e85fe2a042e290a36e07c1a3c7501d14b8f213da1b14d0a06.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..43fb4e2b2f --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--bc32f79de2594b9210628f1b4b7bcc29bd584f6614447bdd967afcf4ef12176d.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index c8318182c3..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 12:17:40" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2ce6045749..0000000000 --- a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3359--824922d7cd4993bda9ec75554ca7e1411f7748a69c45f44aea45866500cf80ff.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b59e8e3df2 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 12:17:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4121f2c08f --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13735--65c7db9b2105d4851bd5c09a741abe15435e3a867382c3abb178e02639a49a74.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..4138968e54 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:43:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..b4a69fce63 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..13d1f3aad3 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14701--eec22a5b595c545111b0078a84f8688407dd670b3885742d593a2f0963c255cc.nii.gz diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..b48748aff5 --- /dev/null +++ b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:10:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf03/anat/sub-unf03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..efe9a5a621 --- /dev/null +++ b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2088--9c5cc20ad67791dcf9a8f765aed5052757187cd4a03ee25028891c8fb1683138.nii.gz diff --git a/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_seg-manual.json deleted file mode 100644 index 6484759de7..0000000000 --- a/derivatives/labels/sub-unf03/dwi/sub-unf03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf04/anat/sub-unf04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf04/anat/sub-unf04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_seg-manual.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_seg-manual.json deleted file mode 100644 index 138cee218b..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:50:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6795d64eb6 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105331--66e382fb4d8367a20f2057f6bb94e0994b927d520b0634fc387d62d9ff91ad9c.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.json deleted file mode 100644 index 25e5bd13a0..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:30:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.nii.gz deleted file mode 100644 index a6c84113fd..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s6878--717ef68083d7ca7c2a33af0fdae9cbebda32b73587c863fb79cc6e36a62d1fc0.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf04/anat/sub-unf04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..37daa07f32 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50588--8e1b36c430db7883bc8942bb9fb675f72f5a2fb5a34cd5c35828bca9ca9d319b.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 3a37c2b7f2..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:18:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 1bfb453ae0..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3461--141a250a31d9f5fbb5f64ece1a7d5f22f5a8e931af8f1aefede15842d348205e.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..ce3798a176 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:18:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bed78c82af --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13983--820fae2c1ddee298f416566128e052166ae89abdbe3b15c05bc1089880912c98.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8a3646a08f --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50599--afdc8068ffd3ceb9c24a58050877c8e4f876ce54157b8307241654758d5bc955.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index c842a9d987..0000000000 --- a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7191--a29cf03767752c54ca05378536e3ebcec7e40f369940acd89c0772add213cd22.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b9aa48698a --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ea1ed226a0 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7215--0b82d8c6a021af49d9d3b2d5266a3d2c38fdb65c6fd853f80d98c04b75c0a549.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..82dbff3f3b --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:50:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..e0dd4c6669 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:30:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ce3109039 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s28491--2ee31f0d82a0a52046b3928c2415c7d3088e955cbbf6810b22f5f5384f3e3f6b.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1e4a078f80 --- /dev/null +++ b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_T2w_seg-manual.json b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_T2w_seg-manual.json rename to derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..813bf52219 --- /dev/null +++ b/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2069--c48502331b3c86d879d824bd876c4acbc948f2db82f2a5cf9e25a0527dc01839.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf05/anat/sub-unf05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf05/anat/sub-unf05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_seg-manual.json b/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_seg-manual.json deleted file mode 100644 index 5925cc46e7..0000000000 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 13:58:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..047555ad97 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105340--2d968f470cff0a277087cb4993d1ab6691c23b84ac430ab97f35bf64b01d05b0.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_seg-manual.nii.gz deleted file mode 100644 index a03df39713..0000000000 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14827--3c1582ac2de8a5d00864506a0a75607bf95b5aae62c74ed1337cf3687dfe1018.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf05/anat/sub-unf05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..120f7f771c --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50604--9687e5fa88a511d7309d60496619ecbd53799d39705f06dd70b4ad959f053210.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 4476b6384a..0000000000 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7269--a10de07382c9bea9efcf771347e0ce94c7d18d64ecc83f51aa10cc8d94b81c17.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b9aa48698a --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7127d5495c --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7250--49fda72461333df35b91db1d33ec8908665da0aee2addf12fd5ab54ea87d4439.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..68f351ae7c --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--663b3d97e9983db2695d97c031d050223380c251b0c0a2269e7eeb75a85937bb.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 514b675ea2..0000000000 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 12:19:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index d041e662f8..0000000000 --- a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3337--27060fc5507e9f8409c997fe79913b425b5d6f98d0f38c0007bd0e91410722ad.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..c8f0004444 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-25 12:19:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..69cc0b3515 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13731--633529d9e417771165ecfcd2224178b4c2db62d838f7cf19c6e84db363453c00.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..921eda087f --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Etienne Bergeron", + "Date": "2021-07-08 13:58:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f6ba942a17 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14847--5c9cf3b572589fa27869c978d3dbbe21523236b3539b3df38fa5f1163111e02a.nii.gz diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1e4a078f80 --- /dev/null +++ b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/anat/sub-unf05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_seg-manual.json rename to derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9a340390f7 --- /dev/null +++ b/derivatives/labels/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2056--05138a5787022293f48c0136c2b0acc8cc759befed11ada850390d5b7eb41851.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf06/anat/sub-unf06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf06/anat/sub-unf06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf06/anat/sub-unf06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf06/anat/sub-unf06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_seg-manual.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_seg-manual.json deleted file mode 100644 index e4e98aaf06..0000000000 --- a/derivatives/labels/sub-unf06/anat/sub-unf06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 14:00:58" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..aff27aa531 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105338--6f91c3c07b6d54508454db04fbc349bf2729e402a94bc2154b383ed8d5acd697.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_seg-manual.nii.gz deleted file mode 100644 index b09488d0f6..0000000000 --- a/derivatives/labels/sub-unf06/anat/sub-unf06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14880--e51ad4e0061b9fb6db33d6f9b704612552bc3abcf5e97b0d03062a0b26167a35.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf06/anat/sub-unf06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf06/anat/sub-unf06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf06/anat/sub-unf06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_seg-manual.json b/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_seg-manual.json deleted file mode 100644 index ff1a0ce638..0000000000 --- a/derivatives/labels/sub-unf06/anat/sub-unf06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:13:18" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..25488ee4f4 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..520d8f0f35 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:31:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..034ec94365 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14062--77fe55af459956433263530dcb3fdbe73c036918858c247d229bff0eaee16bc0.nii.gz diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7abc0915b5 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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--git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..259f39ec98 --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:22:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e95de083f --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..366cc5fbff --- /dev/null +++ b/derivatives/labels/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-unf04/dwi/sub-unf04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..10ae1da781 --- /dev/null +++ b/derivatives/labels/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2063--ec75db14c93da9d8969cbe9ccfece91adc36f36cd05ad7f1ec9764227a36ae3a.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_labels-disc-manual.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf07/anat/sub-unf07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-unf07/anat/sub-unf07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf07/anat/sub-unf07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf07/anat/sub-unf07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_seg-manual.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_seg-manual.json deleted file mode 100644 index 647bc0ad10..0000000000 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Etienne Bergeron", - "Date": "2021-07-08 14:05:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f48726e52b --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105362--7cfe43445e1a70c8388d8d3ce9e1d5bf168a5b4c08aad3c09eb309bf063f97cf.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.json deleted file mode 100644 index 82f8e3edbe..0000000000 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.nii.gz deleted file mode 100644 index 3db0844678..0000000000 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14996--f25b449d16fd2769851b50f8133ca5b1561e4aeb09300d750493e2e2313f0a6a.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_labels-disc-manual.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-unf07/anat/sub-unf07_T2w_labels-disc-manual.json rename to derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-unf07/anat/sub-unf07_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-unf07/anat/sub-unf07_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_seg-manual.json b/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_seg-manual.json deleted file mode 100644 index e86c1f046e..0000000000 --- a/derivatives/labels/sub-unf07/anat/sub-unf07_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:14:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3d511de1f4 --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a65b9de3c2 --- /dev/null +++ b/derivatives/labels/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-unf05/anat/sub-unf05_T2star_seg-manual.json b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-unf05/anat/sub-unf05_T2star_seg-manual.json rename to derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e6c3a7ee74 --- /dev/null +++ b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2085--ee7c3fcb0f9b7b8ca5db57401c6dd9991e2404da74f49bc9dace8c1640f1d94b.nii.gz diff --git a/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_seg-manual.json deleted file mode 100644 index 82f8e3edbe..0000000000 --- a/derivatives/labels/sub-unf07/dwi/sub-unf07_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_labels-disc-manual.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_seg-manual.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_seg-manual.json deleted file mode 100644 index e5ccc08bcc..0000000000 --- a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:06:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d5d0257208 --- /dev/null +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105369--79120713079a4fdc3451355278ec28ba3a52f53fda767c83cd6241e2a9aef675.nii.gz diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_seg-manual.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_seg-manual.json deleted file mode 100644 index e8fd62ffcc..0000000000 --- a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - 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a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_seg-manual.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_seg-manual.json deleted file mode 100644 index cce3a86b85..0000000000 --- a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:17:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..03ab8407a2 --- /dev/null +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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+ "Date": "2021-07-24 10:06:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..af6d7ae2b1 --- /dev/null +++ b/derivatives/labels/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 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a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_seg-manual.json b/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_seg-manual.json deleted file mode 100644 index 403ca555d9..0000000000 --- a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-25 12:24:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron02/anat/sub-vallHebron02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json 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derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_seg-manual.json b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_seg-manual.json deleted file mode 100644 index 82f8e3edbe..0000000000 --- a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1a32650350 --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--db917f329163851652a51c4c8e6dedb69641a4a11a81318b2d3383eb40f9741b.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_MTS_seg-manual.json 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the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ab5b141c4 --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14862--e0320dd5460903f89aae3686f2c2d81a065f87a15039f2f88eb7b4a2046794df.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1e4a078f80 --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from 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b/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9e57af66cc --- /dev/null +++ b/derivatives/labels/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5110--16d3f843bf41ff218ad7e7a87c8eb55e44d82d2aa6d150bc4248d742e37fc0f8.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_labels-disc-manual.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_seg-manual.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_seg-manual.json deleted file mode 100644 index 5c0c739ca1..0000000000 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:14:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3a068feac0 --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105366--013acbb83d85d957f98b256ba8cd806004984cc5d5777dc150bc02b365d58308.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_seg-manual.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_seg-manual.json deleted file mode 100644 index 12149af844..0000000000 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:39:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2star_seg-manual.nii.gz deleted file mode 100644 index ca1eeb6ac0..0000000000 --- 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derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_seg-manual.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_seg-manual.json deleted file mode 100644 index a6b2845f3e..0000000000 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:42:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..9d5c122799 --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50614--e345c037cde50d59642432dde81ddc8a7f2fe93f61dae141d1ede97fd583b019.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 7cbe87d03a..0000000000 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 12:23:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 06d7a7706b..0000000000 --- a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3410--eff7fdc7966fb42e141708717bc84eac7a42bffab38e70ff0bcb71bca8818536.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..cf94eeedaa --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 12:23:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dee0228e2f --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13892--79f6aba0fec3de8a4b4851757e7e460dad7d65794196b7d43a0f5888bc96fa6a.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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index 100% rename from derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_seg-manual.json b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_seg-manual.json deleted file mode 100644 index daf47e2bc5..0000000000 --- a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:33:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T2star_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:51:37" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 76623447a1..0000000000 --- a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3524--2c97b054b5cb4080ad888400cfc5c32da137659d1b52dcb9d4fd44cbd1f55e6e.nii.gz diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a08f266b53 --- /dev/null +++ b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 14:51:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4ac53904ad --- /dev/null +++ b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14263--6c6feb7e32f60048fd964d29897a78678d27c0c4f5dd6183d5d3a3b48e2bc3de.nii.gz diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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rename from derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..8dff4c7c63 --- /dev/null +++ b/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 12:38:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_seg.nii.gz 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from derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_seg-manual.json b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_seg-manual.json deleted file mode 100644 index 0659cc01ac..0000000000 --- a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:32:32" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T2star_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 57e83c36bf..0000000000 --- a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7301--a9df454672d718920b61709aee2afec8da64f1841915afab24cdb00c8974bf71.nii.gz diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b9aa48698a --- /dev/null +++ b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d412ecb221 --- /dev/null +++ b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7293--8a9db9edaacd35cab6f95490a219225e50fd21d322d1b3d4b53076c6b16d4cea.nii.gz diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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rename from derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_label-SC_seg.nii.gz 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index 100% rename from derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz 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b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_seg-manual.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_seg-manual.json deleted file mode 100644 index c49aad866a..0000000000 --- a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:35:12" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2star_label-discs_desc-warp_dlabel.nii.gz 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a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:25" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 9e8762789d..0000000000 --- a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7349--0b69a8c6bf1e8cf38e7d424cff82abf7a6d16d3d92e4f016bace1dada686f8d0.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b9aa48698a --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..744447057a --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7319--99bedcd499fd20582a9c52cae3986ffa96f80fb718eb01680deb919fbed22c59.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ed1dc5b3fd --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13752--3ddf527c21d644b8012ab17d4f8e9a2c49b890039d101d7ef8228e57cc784d96.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..70a6ea8e96 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:35:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..300b32dedf --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5023db37c --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15048--7d5a44fe74529002f6c4b58d6a6ff26bb5c6433e6269f87375a3b986780ce093.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..1e4a078f80 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b898e34cd4 --- /dev/null +++ b/derivatives/labels/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5104--45fd0fb6f0f1452a941112aa8894a078439e9448e5c8a6536053dd147e69c3c1.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_seg-manual.json deleted file mode 100644 index a1037e623a..0000000000 --- a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-06 10:04:04" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.json deleted file mode 100644 index 3e830bf0db..0000000000 --- a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.nii.gz deleted file mode 100644 index c2277054f2..0000000000 --- a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55351--81b414444d19da685fb18fe78f07dae10ed4ccfe5990faf18416e74fddcd2f65.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_label-discs_desc-warp_dlabel.json 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a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2709ec290c --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..44ec93fdeb --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7432--77e4e84ab7a45fd5d2e9222c935ae9646536d68fc4d8d7646e21f688d780733f.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14087--0b3e712453fa951f281b84e1a1cbc48dd4984d44929463343c961c331c3c77ef.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c4e8eaddf3 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-06 10:04:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..58d47c5ed2 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..7383a78d7f --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55373--9b28cc85d0c54f9f901b972a003e9f953e5162a73939f16630e845b1c31e27bd.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..864600fb25 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 21:54:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f86fccdd30 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s15571--ae79fbb8256ec0137b900e498afd45eb979039de2108614dd30c6e188c7abea9.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..34521dd34d --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..763eef7783 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--b9fe3ec793b714dd60c5fb7a14ce9d4cb50570647ce49b0c0220ed1efbb1569f.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_seg-manual.json deleted file mode 100644 index 693ee1bd59..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:39:13" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7791463b15 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53894--a2c919f9b1965b70728ba75bb52fc05c3077abfa7f6fe6c202dd7818e5bfe95c.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_seg-manual.nii.gz deleted file mode 100644 index 1bdcecaeb5..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8225--a128dae932848283e988f40713d93caac41bf025f0dcafaf73cd1cd822eff3f9.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_seg-manual.json deleted file mode 100644 index 4eb8f1127d..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:57:39" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0423718542 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50608--ea4496df478542f24b1e94cd5896dae41c7c16767c080368b95f9327661c3853.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 40fb6be976..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7476--86aa5d117a15ddec946267413eac273824393115b6e43bddc8cd295b527cb3c0.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..61f3db1d61 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7432--dbbb72e856060769643a8d4ef4227c57afc6557e5b0cb2c1b8a2daf660933201.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f895c9a1dc --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50625--9845dba34782f06251ce9d304e6846d06c03dfc01565bb54e042331c8d175b77.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d4422ef523..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 12:40:43" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 95180fe82b..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3401--ab40c2a26011d7c6bc0482bb2e051b155ee09cc0199dda799717222d6cc239ec.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..a3107abe3a --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 12:40:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ffc3c6faa --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13949--8a3d1dd0a3a948a88da265354571ec57dbf89432c59570fcb79bf93bb77d2b53.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..30b2e5c022 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:39:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_label-SC_seg.nii.gz 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b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..26da6c484d --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2427--0f55f5460d4ae0c4d185f322643d6790925edf9f60e9b3a9a337839c7f0b8138.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_seg-manual.json deleted file mode 100644 index 6924f1a7ed..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:40:55" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..203909dbde --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53898--f5890743ebe33df0bf06ef20a86bb9e720fe0a9e454b36d0b938d192092a0750.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.nii.gz deleted file mode 100644 index 915abcaa3d..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8257--211dcddcad3e5427be22f5ce56d28b49a5d16af8acca8772c6a4d91623064f4d.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_seg-manual.json deleted file mode 100644 index 9b0c85971a..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:59:09" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json 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+/annex/objects/SHA256E-s50627--a071017b489597c1104b6b0c98a9a1e1c07e5ab77cefdedbd481be0c9d19b9e8.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 20be97beed..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7474--0ce529dfb5f0db82c4aa1670504b05e4399ce10376c8b5462f89fe3b4b17f5a4.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..825d4c0690 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7435--4c7d0e8674402c6847f7e34c596882d976e7ef16fabfbb917f302e0f18fc3d52.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..35121c36e6 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50630--ab8a027a8bf22ce297470e261b28a977f65c424c3e8560f98f11593965d47bba.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 6a07581945..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7389--d937db34db6b5e17d09581356cc744ac2c282a5a9ff87db799e6d2d5a5a949b4.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5bc0267f06 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7358--1fbc5998bc81d3fab7d166f103b0340bb5d1a7531cba222fc3e03c5ead6c5e11.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..d43a20defc --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:40:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..728d840e14 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8278--5782b7483b98409ddf16649656054a7775bac9795b643c799eb89e964879a79a.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..784c104cbb --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 14:59:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..3840584b67 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2431--c10919556610dbc8107e049b73cd5e88cd40d97ed9dbde71395fcb48b0b04fb4.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_seg-manual.json deleted file mode 100644 index 29086cb65b..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 11:57:36" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..11faa430ad --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53883--4d0524b28f41742a30d14ede2f472e8f27f765e3f6e5f9819e1c7ec2b54dfd86.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.nii.gz deleted file mode 100644 index 445893f566..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8236--8ae3694123fc6e154cc31df56898c8d217c5aab8378dcb0d27f8c99b09d5c939.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_seg-manual.json deleted file mode 100644 index dd2e686907..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 15:11:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..62394af571 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50632--95c7556244f01cb08562068149480d5ae92fc9cc2e1d29041a834378c0f101d3.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 2d042730ad..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 21:56:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 988d939746..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3542--4e7187af44055dae9886f02cd670b8a9c6f44089ddc25b8ae79a3c8986cb505e.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..e411468457 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 21:56:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cc440ea090 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14152--66de458a8b857d375c9deebf165391a9426629e048f8011930e88a27994039c1.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..169c26a9ae --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--05ed691fdfe8cae7154702073ca755cf33c9fe2138a97641ac87c48699df41c9.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index cf75b7f217..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 17:38:23" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 787ae97463..0000000000 --- a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3448--f9561ac7b23dcaaeb4889b10370996d9fc30c44d10af8ef5cfdbdcf2075e4821.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..eea7fef732 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 17:38:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aba206bda0 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13939--f2aaf9b44b49fbe31632de87c8c62cd80bf8d646c22694ae6f01edeca222b591.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..188e411212 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 11:57:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0970ba991 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8257--37aa3bb5e7f7c6e4fd5e64d38b2844a4db8ff6fd9247b1e7df24d55fa5f413cb.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_seg.json 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b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..d961eb1446 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_seg-manual.json deleted file mode 100644 index c039d37204..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 12:14:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8573d4095e --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53891--5af215c675bc584808928fdbe2abee8b8e343c3c50d83425f80c5de1ebb529f9.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.nii.gz deleted file mode 100644 index b23e941d0b..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8271--b4974643678915d009ac5f704f7297092a422b0119f0ba771e08cdb07577bd22.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..ebf01ec976 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--aa142fd3cb9e7d8fb91bc0952d5ceb487416868e0072669e2e9ea06df8d3a0be.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 82fe8d05e4..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7449--271604c362e13ef6054be1483d662d6ae5645685023f371b1467d54d155ed8b8.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a6701a263 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7409--4a778e2f04d716e540cf2e05ca7cde693e4f07e7306dcf5370ea7d44e1165fae.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e99f3e4a25 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--1343805552851785d04cc0ff80c33e587493ee30e279fac5c064ff1c71060ad5.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e868e43ded..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 17:30:15" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9b57878216..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3432--c3e28f11c07ff6f2d4f8d544a393f4d9296a330b06c26e249f4bbfe985621fff.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d075b02fcb --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 17:30:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f072e7840 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13937--3e9b35e7df42dc540352421bb9a2832991b5fd4cd517e53d4a600bd37812efa2.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..3fba24e905 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 12:14:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3ab38b9590 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8292--89dae3ddfd9e988db06740fb295c05eef40027859f6536a2e8966b1bc825d542.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..34521dd34d --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_seg-manual.json rename to derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..0d4d06c1e7 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2439--b0cd2bbc489effd10cf91dee4d423b8d3e9fee14a4743b481e799088688ce04b.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_seg-manual.json deleted file mode 100644 index 02f4e8d1b5..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:43:35" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2d7ef450ca --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53887--66a29c2a9335bac60e78478f93ebace0e6b115eee39703dd8061abc5cf532b0b.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.nii.gz deleted file mode 100644 index afe64ab8e3..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8334--14644a68251cece142e30193942bc8215a11990f729644496e7a1bcdc3eb80e3.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_seg-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_seg-manual.json deleted file mode 100644 index cde120443e..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 15:06:06" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2018f58295 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50623--b81bf6dca8cf6be727a3816d5058862cfcecd54056784c33096190003d718fca.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index f43a36a7a5..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7447--02784562f18e4025e21d7118a798c46682e555ccb64db275509a4e3f4b7a2c9f.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..16edf480c6 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7408--d1c94e942fd5a6f87e20fbf73596d5c36732b98cd2940fcf4132c97463ba4c5e.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..7a8aada69d --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--0ea908c1fc3a22bd2890ce3ef6283b55c01c7efb7d4222a6f565507e532eff73.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index a7dcaa9df5..0000000000 --- a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7368--93b18ef7bfb7b8deed74023d13eecfa5b10409a053bcf2e4474c8c4b58bf19f7.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a030831dea --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7358--5f9f03afe1519f67b78cd901582a7e8caa676116d26c57d64f9d2cf7bca992b7.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b4a7bd717d --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:43:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4277e9061 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8355--4e936544e3efbb867bf1440ae75d1540fe74717316604ef107d801a5cda1501f.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_seg.json 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b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..c31d9edf1e --- /dev/null +++ b/derivatives/labels/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2432--242be847adb5df279b43ce1227b3f0d0643e6270bc171601ff575da91bed45ce.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_seg-manual.json deleted file mode 100644 index f40e798dc0..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Olivier Morin Lupien", - "Date": "2021-07-24 10:45:45" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..715a769f5c --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53888--16380522ff256a658c0cf3d66446f74e281fc15ec089fe858becd6aad2312c2f.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.nii.gz deleted file mode 100644 index dfd774311f..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8453--893ec1bbb57de3b5bc612733a17590994281e873ac1e2df3bdf99c115765b7db.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_seg-manual.json deleted file mode 100644 index 13083dc663..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 15:01:07" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..6e94d31d0a --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7482--6ff14fb4203329113c1f9cfb01da8b2998e24838acae8b71ff6ec86ca37c15bd.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2d99fbce90 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--1fa6fb4c7dfec4ed5da7770a5ae140c45f672269d7f53a6742a6573d9b93bff1.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index f32f44775b..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7421--856af35fcfa11331edce7ec9850295d225886e57c312e6fea270eed65d28188a.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a1e2728384 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7404--7a399ce399d2366e7edaf6311ccf52c969b2e2d68d0500aef49d49dad9ce7113.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..52ead53273 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Olivier Morin Lupien", + "Date": "2021-07-24 10:45:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd2cb45fce --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8474--3f5256541146a981cb0a264fa055abf033ab1f289beecd01b658c7356f7663b1.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..5d1a3bb44f --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 15:01:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b350f69c76 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2437--44c239370675df1f6e925906b10f29d917a4306a1cbae12c74670daa5a87613b.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_seg-manual.json deleted file mode 100644 index 8e52651d06..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 13:28:08" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2061b3a88c --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53887--e1332c0f3e1adf7f8075a1f74e8723d403c618831afe988239a9f91809d1a0cd.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.nii.gz deleted file mode 100644 index 7fa678f7a2..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8319--5b34b146075df3d8c21e4165b70afbc4a430d5b68572655d4d6ff349004960d0.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_seg-manual.json deleted file mode 100644 index 790ad058a5..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 15:14:46" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fa6107ccbe --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50626--5cfc5609b5edde20c8f93ee4e77c71aa19a11ea3bb7ed91e50e497d5e62d2bda.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index bd78b1ea94..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:26" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 3774af6285..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7457--8d9b0f45ffffacc08fca5ef4e77a7052062ccf512ad13a4ed2502b1916bc01cc.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..4a9342d9ec --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz 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No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..59fbac0f61 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50622--0d35bdb4cf94ea9577659fac7723bd5c8c2085d390e73e55fa15ad0c9ac2258a.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index a415702bc0..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 21:49:24" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 34ee2f5e2e..0000000000 --- a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3477--a2a7ae323f8ba67a79e30666b4cc725d777ea2fa6bf710444aa9c7ef7f357ded.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..2094f4dacb --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 21:49:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..636fca669a --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14020--f806c1611b0e76ba70ab41fcc7a41f2dd02b5bbe74322b9bbcf2f95116c7ebd0.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..c236786dd0 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 13:28:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..6ca9aa6155 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..98c374d4ea --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8340--6eefb52c8421bcf0744b1f8a9652361978a6657e4481c541b9386c1639894bea.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2w_label-SC_seg.json 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b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..06e41f1a4b --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2422--8d0717a417a6faa5dc490005224e7d982ab733c4a186cd758756dd54546b6544.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_seg-manual.json deleted file mode 100644 index 78d5810522..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:28:21" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.json deleted file mode 100644 index 6e2bd03e2f..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-03 10:35:19" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.nii.gz deleted file mode 100644 index 5d8359ad48..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_gmseg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55467--097f63039350ed5534a66ffd57d4eeeb7c36bc2d0d95668edb01968aff92a821.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..fd9a6aba0f --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53882--b3dcd4eeeae25e8676752b94123819b088f728a6645e49db889d626bee0c8f1c.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_seg-manual.nii.gz deleted file mode 100644 index 591e10cef1..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_seg-manual.json deleted file mode 100644 index 0fcd72be10..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 17:27:34" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..2c85da7025 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--29f88e94b5b3926dc88d6805909aff64f2d52ef409f33bc802e25aaf2de9df53.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 34e9441348..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7475--c817f9429f661a00d5c920f2640967ad154e7ac94f940aa507eab8e02fc3dd2d.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d86bef3304 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac0e13e659 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7435--1090403ef9a46558079f5b90fca0d90b99c7bf3f5ff10269c97cc031cf9f025e.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8eaa3d5dc1 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50620--1ede801d987c709a9469a03624210d6fd98a066fe28527620fa63cc5888e7c8f.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index 29fdf612c4..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:04:20" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index e50603f51b..0000000000 --- a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3435--2e47f44a513c415ef3955684822886a977564a4248e250bfe129d81a7e56623e.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..060a4540f9 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 15:04:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..33a14ffdb0 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13946--00d7b6c2bf8fcb08a8e6757c69558c7469c0abe5fe13165dc64af46a80945649.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..e0b5ccc89a --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 14:28:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.json new file mode 100644 index 0000000000..3ca7f81c55 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-03 10:35:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.nii.gz new file mode 100644 index 0000000000..f6e064f274 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-GM_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55477--401171448c5f472b4bbc9837295fd8d1338b1122e1f41300e1fddeb956f062b3.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..399ef20316 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ccae79c98 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8252--ff2a78de1af70cb841b8561ef6ec9422d6e8eae1149e369119b02e36bade29f9.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2w_label-SC_seg.json 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b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..67e99fbbdc --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2430--4dea745e36ecd430ca102dc6adfaa11615a0f87a03e0a1114994a1653999356a.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_seg-manual.json deleted file mode 100644 index 4d812ffc5d..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-08 12:22:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..f7af7b1d6a --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53897--40b3bd782d35b149554c1a484b4ca6cec807b4261100c9736641498a40cc5159.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_seg-manual.nii.gz deleted file mode 100644 index aef8220d1e..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8367--5cf4291747d408acea95b5b822c5632d902c76121e0a59ecc03249f908fdc1c2.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..02cffec67c --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50635--055778355a2256c9961cc13f7ff381b47ba34c2907c90380faa10a1c0d29170b.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index d2bee42ff6..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7439--029a96d431a94fb8f1c43a34e075f76923e67a98265887eab1129a1e019f72c4.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d86bef3304 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..beef81d685 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7399--68ccbc51598b796fb4541684a1b7d3a916a5cff6423395ad3d9fc60f7c30b4fa.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..e87e10ca91 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50624--21f391ee14c826c7b537517a8d7b1741b0a1923e4f12cda5b5cbeb8ebd17fa25.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index ae61381f5f..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-07-12 15:03:51" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index dda25f42ff..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3429--ce68399b91e3280ec87a1fc3f5a9d638e26bc1fbcc5b782d8312a795ecb0e579.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..b2e9389f18 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-12 15:03:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5d525fa6f1 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13890--d69157005a2754fca0dd24654445d6f9d12bb88073f246e19093d43cde92e480.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..0241443a22 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-07-08 12:22:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..399ef20316 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a38489ef91 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8388--8e60b1970323cf6da32005eda0808ade2aa443bf0bfaf34782f00c15dc199db0.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..24dcf3dcd3 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..201d0ee1b8 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2429--ac85624865d89a7bc29caf1347917ccc187d937fe59c899cd51d814144321b7d.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_seg-manual.json deleted file mode 100644 index 37b0172f5c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 13:35:44" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..26e8221a3c --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53886--2929fcf16feaab2b80ba3c12a5791235f004416f0757633a50b494c3b3ddc6cd.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.nii.gz deleted file mode 100644 index 84743942fa..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8441--cd7bf02d3fbb20062c6d21aceefc2e5b8914e4dec10c8cb4d6b96c4cbc069836.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_seg-manual.json deleted file mode 100644 index 8196639cd1..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Paul Bautin", - "Date": "2020-07-30 10:13:33" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..b60b88e0b7 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50615--9934eee6d61a88befdb52397b601bedc475896962d9575da415e0b81c7f99069.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index 15dabbe82d..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 21:59:05" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 431d7e32a7..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s3532--a8bc8e016b46e233e65e365dd887ba0cb4832244e75e7944cfb23fb14b37d702.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..1a4041b76a --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-08 21:59:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a2bfb3457 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14124--beb95d4b23f84372508f826ddb3d07a3ee765d0ebd6230a05e07e6e9553a0016.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json 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+/annex/objects/SHA256E-s50615--45599e84a2cebd170d49d0d14e4fefb849475fc5497b38732ef95bba0c49e5c6.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index d9eea35e09..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-08 21:50:57" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 2801546f4e..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14093--18212ccb3af31cc1a17b297d41f88e74777fed28834e9191d8ffc7d5aa713b17.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..1b8a83e322 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 13:35:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json new file mode 100644 index 0000000000..e537a137e5 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.json @@ -0,0 +1,11 @@ +{ + "SpatialReference": { + "Orientation": "RPI", + "Resampling": "1x1x1" + }, + "GeneratedBy": [ + { + "Description": "Manual label of C2 and C5 mid-vertebrae, at the center of the spinal cord." + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_RPI_r_labels-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_RPI_r_labels-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-vertebrae_desc-C3C5_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..399ef20316 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6dca83576b --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8462--dab721f16c617909d7085c22cf16a4e2ab12c769bf49042df513837bfa361ec4.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..99558df0de --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Paul Bautin", + "Date": "2020-07-30 10:13:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..61ce643722 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2426--db68801998ce2850236112ca4d0178db261870eea2ba60c0ea2152239a32dff2.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_seg-manual.json deleted file mode 100644 index 28282a1630..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Yassine El Bouchaibi", - "Date": "2021-07-07 14:33:53" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..8f4a562161 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53891--5d5985acd07a6efcdb0838768a4c31b3ace0a55a8fd331d1782cdafb5b35b90b.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.nii.gz deleted file mode 100644 index c726f1eebb..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8336--2192cdb0026537814397b01d1624adab74a606df4934067c20c0b6cbd51559a7.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_labels-disc-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_label-discs_dlabel.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_labels-disc-manual.json rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_label-discs_dlabel.json diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_labels-disc-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_label-discs_dlabel.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_labels-disc-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_label-discs_dlabel.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..036043b403 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50619--b9f19f5290cc2f63db5cee8f1fc48e53c660bb6b3c9c1669b334454a9810bf9a.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz deleted file mode 100644 index 40ae948cdf..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7445--6d2a403bb2727f1b966ccac9d87f248e691fc2ae3ce4289fab633a280cbd8be3.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d86bef3304 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ce7c91cdb --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7403--7dc6dfbe49c41aff806779ac51c9161cb4ef13fa050654f152b98019d422c5ab.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..1bf25aa8d2 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50634--db40c8d557847c9456ca6c5edeb2e215ad0b2646989e0f8d5fa609f483f67162.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz deleted file mode 100644 index 9b6545496d..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_seg-manual.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7337--259f12f0c8852acf87639c1be8e2af3dfbd0da5053743313d4d9cc12748d5420.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json new file mode 100644 index 0000000000..d86bef3304 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b24bc0e728 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7335--05d599f74149b78488577694b368aecd82f9356cf00ba6be3952225af94a60d4.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_seg.json new file mode 100644 index 0000000000..b67f11ae3d --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Yassine El Bouchaibi", + "Date": "2021-07-07 14:33:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.json new file mode 100644 index 0000000000..399ef20316 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a66070cf2 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8357--686fac33c0f649e8fe94c024ff70d2d02034435e309253ef8ca682afdf00c91c.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_seg.json b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_seg.json new file mode 100644 index 0000000000..24dcf3dcd3 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2021-06-08 15:06:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_seg.json similarity index 100% rename from derivatives/labels/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_seg-manual.json rename to derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_seg.json diff --git a/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_seg-manual.nii.gz b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_seg.nii.gz similarity index 100% rename from derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_seg-manual.nii.gz rename to derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_seg.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json new file mode 100644 index 0000000000..26b4328e81 --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.json @@ -0,0 +1,9 @@ +{ + "GeneratedBy": [ + { + "Name": "sct_register_multimodal", + "Version": "SCT v6.1", + "Description": "Warp from T2w discs labels" + } + ] +} \ No newline at end of file diff --git a/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz new file mode 100644 index 0000000000..a930f6c84d --- /dev/null +++ b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-discs_desc-warp_dlabel.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s2422--d7068dfef779df1425ee84824b0620f4d6917dc1663b5c26a6421db47e8b2720.nii.gz diff --git a/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_seg-manual.json b/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_seg-manual.json deleted file mode 100644 index e22f925b2c..0000000000 --- a/derivatives/labels/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_seg-manual.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-06-08 15:06:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/README.txt b/derivatives/labels_softseg/README.txt index e37728ba0c..71f8f44936 100644 --- a/derivatives/labels_softseg/README.txt +++ b/derivatives/labels_softseg/README.txt @@ -1,18 +1,11 @@ -The derivatives labels_softseg include soft segmentations (_softseg) of the spinal cord. Softsegs were generated artificially by averaging binary segmentations of multiple contrasts using [process_data.sh](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/blob/v1.1/process_data.sh). +The derivatives labels_softseg include soft segmentations (_softseg) of the spinal cord. Softsegs were generated artificially by averaging binary segmentations of multiple contrasts using [process_data.sh](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/blob/v2.2/processing_spine_generic/process_data.sh). Main processing steps include: -- Spinal cord segmentation on 6 contrasts +- Spinal cord segmentation on 6 contrasts (T1w, T2w, T2star, flip-1_mt-on_MTS, flip-2_mt-off and rec-average_dwi) - Aligning the images with T2w - Averaging of the segmentations according to each FOV - Bringing back the segmentations to the original space -All problematic registrations were excluded and the pipeline was run again so the softsegs only include good registrations. -7 subjects were excluded: - - sub-brnoUhb02 - - sub-brnoUhb03 - - sub-brnoUhb07 - - sub-brnoUhb08 - - sub-mountSinai03 - - sub-oxfordFmrib01 - - sub-ucdavis07 +All problematic registrations or if a contrast was missing were excluded and the pipeline was run again so the softsegs only include good registrations. +Excluded subjects are listed here: [exclude.yml](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/blob/v2.2/exclude.yml) diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T1w_softseg.nii.gz deleted file mode 100644 index f6b6af01f2..0000000000 --- a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359891--77ed64ae70ae33648fb3aaac8fa490e746486872649dc342f7631e61d8e9d74a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2star_softseg.nii.gz deleted file mode 100644 index 360612388e..0000000000 --- a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82558--49ea4368481b878796a3aaf0868589a5ab4d8379fa2ed43cac1768935c35105d.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2w_softseg.nii.gz deleted file mode 100644 index 10b20fb937..0000000000 --- a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s188409--8cdd564552508d6a8f98ce0052a003627428db248a0f29ba98a969067bb87f8e.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 17611b6fbf..0000000000 --- a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37660--57f74bff60b886eac234c4f8f9fff061fc396e6e2e9695b0d268ea81122cb682.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1cbddd57b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37616--d8cf0732d9aa4d64b32742cb6209a44919c188660403662698f7080901b4f407.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 538bda1a7b..0000000000 --- a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37166--3a2ffc7b6c614a2cbea8de952d2f4c77b62362a5f542142c1abb0ea14b659244.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9d9d7a820e --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37144--be517cd14b1a53fadf5d69268b7a81ee49635b27815ecad1b1fee9a73f334f7a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..85c510047b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359867--698ccef66620c942e27710dcb7073f72521030837fdf121f756570da587bfd3e.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..95452f731b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82532--1cb0af2df2a9d203285a8d73010b5c1943bb4619f3ea5d750e9f0f72329deba3.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8377974b6f --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fdeb8681ad --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s188386--94ac868742df24a5efd2af48f4ee8ab379531454599853f057f65f0225b99a60.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T1w_softseg.json b/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T1w_softseg.json rename to derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fdd6cb2f0e --- /dev/null +++ b/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11778--4d4311d86c5da4a557e60db110d1117beb2f847369e893870b5548739d830849.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b6a3c2ab99..0000000000 --- a/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11816--3fbb73a85491c091ee5b94d5671d7f24f535b2e51c6bdcbcc446517b4d71c22b.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.nii.gz deleted file mode 100644 index c6192e9ac9..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366572--56c8a4db4b71769c0262191024c8fe350c4a35103e70c456caa315bf6816e53a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.nii.gz deleted file mode 100644 index 833b026443..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87536--f0c3b1ecf64993eb5008a611f6dc11f8e58c7edbe439aeac7e0b73ef8f4f698d.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.nii.gz deleted file mode 100644 index 6838706dab..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213500--b803366db9d3ca092f42a3624956bc1f636ec9107c79346ffc5b78b3dac67187.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4752ce533b..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40823--be3ffc5f2fe6ce17837d15bc49e48d10e89df1da4da7e7a296df02af88752546.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..43eb14ae7b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40862--33f91957b5adfb3df74aa81af3760f9f4c842db0b8480d93ca822f41c8a3fbc1.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c9707968a6..0000000000 --- a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36174--6935b6c8235e18e2b7cd261c25a99c2549b76a9d96d47896bbaa954a2d6dddd1.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..29679704f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36181--3cee242e1a3cc8caf980f18042035aec4b6385cd03bb2558e2aa5dbadc1568ba.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..042fbbed49 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366547--86d71229face5c2261e09686dbe72d2be1385aed1b69bb4f6c4a4bd8bf4c351b.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..42da4b37e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87510--87b13a8fc42150d8cb0a3f4bb6e7583c843c035ded9f2d7396e280d2594d60dd.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8377974b6f --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c75c671efc --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/anat/sub-amu02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213475--7241111cac7c6fdea162f2cdb7e44cf56b55f7e333508b0626b3406db1ff3c80.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2star_softseg.json b/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2star_softseg.json rename to derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..214a07855b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13518--51f352ec0fc84b600e77fde6210abb80b4185e2eff9f1581f3c6927c120e6eca.nii.gz diff --git a/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 30994a93e2..0000000000 --- a/derivatives/labels_softseg/sub-amu02/dwi/sub-amu02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s13554--37c273445c6b1fbf98b868ab4c9f33ec10ba36913f156c9a7e086db31c5f3224.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.nii.gz deleted file mode 100644 index b90742b80c..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360096--7f7172ff49f8ac98fcb41d3857047abead7cc9b17e9102b54aafed7257c5cada.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.nii.gz deleted file mode 100644 index cb4dd2cb12..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85565--be21f7e24d1f7bfa9e839523bb616d35e381e65209c0954af8959f5710da5a32.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.nii.gz deleted file mode 100644 index 2d8508fd8a..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209934--70ef0690b011f61eb61844dd158e8b212add44068b0dd39599cdc78f243596f5.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 86ef469e60..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39786--ea62f54f60128c8c6407e96fb6cf97e30cd9625a7819c61fbcf024226ca9e599.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..028728d1fc --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39756--799ff23ae874a12b5e86fc992d380b5417b90ab355a0f01ba2852f4e6607249e.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index bd80e5b18a..0000000000 --- a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38723--e90ea16e44276358bc41a595689823628fad49340e30404119e6a8fadc201cc4.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0597eb2de0 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38690--8146e244adb6cc2c22a71a4f7ae85b739115a6ab99ead09495173da2b5736414.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..94fce5ca23 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360073--1aa0667fe283a9ca1ba3b3e48b54d1443caf373f207064d8aa66999e6eb5a75e.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ca47af2f3b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85538--898ad0efb99f6b7fb3fa5a9d10e61f88fdb5f4708616bf652043074055623457.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8377974b6f --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2f6e27f7d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/anat/sub-amu03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209912--c04e527ec1c59aa725785d1d1db9e1ab81204b3f29e5ee1b9b6a8bb4ea2d8719.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2w_softseg.json b/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/anat/sub-amu01_T2w_softseg.json rename to derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f7a6a0696b --- /dev/null +++ b/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12634--c998ad332272017dd17d7c1ec40704090882a622ec2bde6e4900e407c2bfa3a6.nii.gz diff --git a/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 96552f508d..0000000000 --- a/derivatives/labels_softseg/sub-amu03/dwi/sub-amu03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12670--a5e0e54b590b1fe3e45f7664f7ed0795e7aa9580b71d6453013e4b88d084bca9.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.nii.gz deleted file mode 100644 index 50e48d3c13..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359404--37f225c84129140d32fbc3140cc09fe8a6fc8b42450a48093c7ffd1922489f24.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:35:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.nii.gz deleted file mode 100644 index 7aa2701c5e..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82926--8b09ca1b1a8024d3ea1b4cb209eb5aa8582424d25bd16362624dfbf6ca12282b.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2w_softseg.nii.gz deleted file mode 100644 index c54656ddeb..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207578--197e6ec7b6cbfd779f3ab760a6b7334ee63166b8a8f62d776bf44e3ff1783bbe.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": 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"2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bbb094a189 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38410--e629446c55ddb1db5fe6067949afe69b02aec118b3985097f66c9eb9dc9ba72a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8190f8bf00..0000000000 --- a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": 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"2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5c2e60cac1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37131--badb7d4a2ccd1e4ca0d13963bc949877cfe5fddd90b0559ccc2fc8c3f39b74ae.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fac9226dd6 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359380--8aeba6f4d090fb02099ba7cba241deb6e481f5a6598b37d0a6d777335773705f.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..42addb6111 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82897--dfc5d6a2cb2437fd7c872f1af278ee61c1fac6314b89baf13a5e9f5e57c543f8.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c95a0f7e7f --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207554--0219de553d61d238012c7bb24bf823a3c36d78eb8edc256676ba711c7e1f84ba.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2w_softseg.json b/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu04/anat/sub-amu04_T2w_softseg.json rename to derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..630c4c3d25 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11900--38031ce158dfd9b9aa23ea5da27f9cb8dfc04dfa7495e4cd8d11f1cbe7643078.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 12fe132bb5..0000000000 --- a/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11940--863d1d6e37640ea59632c35463d6b8be785f652a8c552ba9250ee5ffaee9c2e3.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T1w_softseg.nii.gz deleted file mode 100644 index e995e73561..0000000000 --- a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357227--3f3da856bb67536e5b7ad148e86b5bb4a8c698234e808346d0dfee2c770df863.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2star_softseg.nii.gz deleted file mode 100644 index 5530cdf203..0000000000 --- a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80276--4847edd24d94f7bc98f18325f63c5a643b62011563f0e897c7fc95ddb95c532e.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2w_softseg.nii.gz deleted file mode 100644 index 5bd409050f..0000000000 --- a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s186328--408f824416d1d7dc63b04b9df32b36c7c1d575641389b1d56f5d93df08db002d.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index bf06aa7d9a..0000000000 --- a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37452--41ff9111fc95598c956aedc928602cf1fe4746e3228e098172e538979bedb193.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a6d4765d64 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37419--11496712dec667720133ad86eafb430076546691783aaf6e9f92650bd5ad1c3a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index cd5aabb23a..0000000000 --- a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36433--37d34bc53d1734ef7fa8ee2c2f4e1277935ca90911769ff94872e796eca4cbc3.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5cb932612c --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36414--ed83cd29346910567be41b840915affccebfec0729a06570651965c98c1f3ea8.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T1w_label-SC_softseg.json new file 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b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f8c1e50954 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80249--f51209244a6941fa9e5fe662ce566cbf31b254b6eeebc9e958f1dfd8fd4e602d.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..854fcf81a1 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186304--d234fda4eb734a3880026647dced1a3476fe27ba1d98da7480141b5271fec16f.nii.gz diff --git a/derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu04/dwi/sub-amu04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..acf2aa3c48 --- /dev/null +++ b/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11145--1cca53963d20a503d4c9e58e883cfd1934320dfd81e6911bf69fad2ae9fa238d.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c0cc46442f..0000000000 --- a/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11181--05ab54929262d2f0794881e73db12b0168796beb9944894d578d6d207a4d2205.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.nii.gz deleted file mode 100644 index 4d1ecf2d59..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355982--9e19c2cbe662b2eac5968e58aff3d1243856f26cb8b2c7a3a8766d3843d1a2f2.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.nii.gz deleted file mode 100644 index da043c6ed1..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80292--632a794e7a5c36108be7e4329ba6780cefe2fee408c3397ea6d230454c2ef400.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.nii.gz deleted file mode 100644 index 90eb39a93d..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184230--1f6f026e9f8cffa1d4b080fb72b29aaf1b117cd24c068c45b84d66c5cae7f755.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 03d72a7370..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37406--0bf05445b26b57fbace295c21179b53c83e680eae9be2e0d21359a457b3d74a2.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d6ebd30cf7 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37342--71842190752057257f401a72ad25e53fe82f615a1ce832b185eb9fb083e8c3e0.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 8cf557b927..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36657--6cc30b7dca8920dcad9306103a1380fd74c0ce4d5982242d584403d6e60b8161.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a325ca1e95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36660--becfc580692bcc61dba72482ae6a40ffea05ca116d70aaee70e7e0fa977fb050.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3e46f22a8d --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355963--1f3adcce8c3415e6b80315758187e79f2e52fef0b28f9bb959dd4eced59044d8.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cd3d1a7bcb --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184199--9b8dd8b6c7ca8f038272c22cf8accb0696426b9f1703a7b65a6189bf53e50e5a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T1w_softseg.json rename to derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..34d4b8044a --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9347--0994cf0399c1de1ef0c5a8c6b8699c48d507b9ab63d3c2041eff496fe6cf6b60.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 05bebe2879..0000000000 --- a/derivatives/labels_softseg/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9387--f4e53fb22f353e29dc0ae87cefdf9d33928e51177874342caa68ef6cc6a755d9.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.nii.gz deleted file mode 100644 index 462fc567b8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353761--1caf900429a1305cf3f0202d5360fd32cfa1ab21ec8b98e2d82dab7ad710634e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.nii.gz deleted file mode 100644 index 0370baecfa..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81751--b1a74d6854bd8bb5a98b20c6ba53ff5543892c88d7cb904d669454f37e2bd961.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.nii.gz deleted file mode 100644 index d9689d6980..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199212--f932827924075526408d769dc1adf7d687c539282dba3a162e22f6f2df3261c0.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.json deleted file mode 100644 index f0730dca86..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-09-05 18:49:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.nii.gz deleted file mode 100644 index 18e47522ba..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s74042--4881b40d1fef57f6748d7b5174e907b15b1e2aca70d7d6c4d2220fd9b3947ab4.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a6a7c3d36c..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37453--40b9149b29e9dd9e33a5b7b4e614074ec7cc51729628c4b646c3e0acb8b1858c.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e2537eb318 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37466--1f92c6d8e2c0671de1e8708e9d8c25e778a7a415caecf04a54cf746425070879.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 105e1f2af1..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35685--f34c3b1162893792c50330c2ce4aa54b737206899a4ddc545a8bf996f81101dc.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1cb2dfd1b --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35662--83162c5b5f796da357c49ac20ca8c6b4928f203a551add611a222c18225d111f.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..21ecce6a49 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353735--8a1744418ad2b6992d17abf5f84aeffbd9c0d29ad760e03532c5f21c2cb5b54b.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ac890b8e5d --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81715--15b5897da34d1624eeceba39e30166582bd5d3d76fe879941841d6cd7bca5f7c.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4d4dfe0f44 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199182--b26972180a064eda4bfcd4d6afb0b8b7cf593e9bd8d08284cb227c11bcbf4694.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2star_softseg.json rename to derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..785e2463bc --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9876--4551da4b55ce8d63ae416843141d8b30630bc539e5ce306d90a6cfc371c1e2b8.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b9da7890b9..0000000000 --- a/derivatives/labels_softseg/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9916--f3cf8dcd10636c53fcde170d890e0e36d54adc2e5f1ed851a7ae294b17cf3efb.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.nii.gz deleted file mode 100644 index d87c6a9403..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352406--b776e2eb88b0d94b1ff36576cfde25170180940c61bc0fd3ae184315f5346784.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.nii.gz deleted file mode 100644 index d57d1a1d00..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81784--06962291451d885d84e5733d7845ba5ec42296c5bb05f2b47b665c96edffc1ac.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2w_softseg.nii.gz deleted file mode 100644 index a68f5a8b65..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199281--0f49298a9c6dd98ade37fbaa0e8004a681134dd7ec81a486580be9a657843b6e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 972357890f..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36501--3ba6664e3226e1c202f359527ac02ac00b510ccc33d32c905606919c469cda80.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..45d1d07141 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36472--77e798a92e428e6f72df9386eebf96003af7b69381c6abb038b85722736af821.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19fed7e193..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4ebf98eb99..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36112--5124e284630d9c261f4f52dbbd13f943bef26288246c59ac74def39ad15d0fe4.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8269c1b014 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36111--90716ca37d5bb403b36c2248f1babc815956044e6edef6435aefdb907c641d94.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..06f06edb61 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352376--27004c78bccd9b3b6401e83a4fad3345c43b84af4f6036b616dc262884b6cf9c.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..752063d52d --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81750--44a602e1d31e9718fe9ded7c472bcdf315b207c722af72aafde32704479067a2.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4a416176b9 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199252--62e72d5c1c2110fa60698f93b9bb7ba96cf2571090fc9ac51267cd09c8a51eee.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2w_softseg.json b/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist03/anat/sub-balgrist03_T2w_softseg.json rename to derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2cc375c1b1 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9447--449d80b658b38bbb46722b7e86d991c2c85ff34a6e2408197f312b5d9627231e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1a57c5a7ef..0000000000 --- a/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9489--0679bf719d20f0afa6ac447e8568b388b1b7c39d8352adb15991d3b952e77bd7.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T1w_softseg.nii.gz deleted file mode 100644 index 5663535b39..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353197--daabf2b6ca164154e6c7a32fc1a3da945e2c3a16a132ec179968c6c52cad1d76.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2star_softseg.nii.gz deleted file mode 100644 index 65351f427e..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82665--0315b738521bc2abfd42de63dc5265349a3c5b5358ea58d22eedc31498e7ce0b.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2w_softseg.nii.gz deleted file mode 100644 index 81cd2fd91f..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202807--3809694973c14ad5b0fdd3886a7aa93dbd607bb3a232214ea4f1e2b0808b93dd.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index d4b9e87f57..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38286--8cc906e280595751df9ca55d37ca5a6005378bcf53fffe7c9739f2dda8c58dff.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c185c19935 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38236--00af0f7793d98c6ee1687234a7d05c900385b052761dd368de82e0383f625419.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6f2726bd6c..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36286--11b0ea20203c2b95fea673650499a4e24219db7ffdc1602c1bf7c72a8c364885.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7dfe874f67 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36220--a106a62ae976e8ee34807a2683f618169ebec8502b4363eae145372ce54e70e7.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4aa07fc675 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353167--7309c1ab8c1c66c8a250452e26ad1881f889bf8f9d6a668f620631513f3eba09.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..188ea204a8 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82629--1e493cd47975cae4016130cb463bf8786420edbfd33ac1457458bd0dd74c77b1.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ec7f9130e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202776--299e125868f41bf59312d5a3f80680774e51269f7e9c1a90ac8e62b0c376dbb7.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f9e527575a --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9865--0a5c139859c8abc60a219542c187ec72aad574df1451c56d482f7bbae4b87b67.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a3111f25fa..0000000000 --- a/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9906--7be3f70abdf96908be6ce3dc57235b1d566cc329d8916c53dde5c47acc140f28.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.nii.gz deleted file mode 100644 index 115286ba05..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354661--1e332e7c0b23b76cb72a134aa5724d77deb2a5d1a3025b2a49ee01889ff87f02.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.nii.gz deleted file mode 100644 index 1fc1347615..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81549--72237377ad6c1a87f71dbf786a65a64de23dd389424343bf245de3c33f51d3fa.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.nii.gz deleted file mode 100644 index de29b76e80..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199323--e926a4a208c116e7e348001ba3375ce8151149b02c86c495589b812c1686693f.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 308f07d447..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36472--486f930500492adc122e970eded8eafaaa26b5d150ba3a9140e8ca1e5f88a556.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..702a3218fe --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36455--d9165cddf80301e52e1f197bb19299728814b7492a10f63dbd4ec6cb909b1aef.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 577aefbe55..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36898--17f723f642bea68faa24f7b83f059802011f28dc81a55b75bc2536c94e6cfe2c.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9fbcd1f43a --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36866--1a4080202ca1576cac26db1a1d7dd5ac0615f969033a2bb40c36afb6468cbfae.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c488b85184 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354632--6fec575edaa7904c4b6f665ffa91bbf2d44c2c7592da05a9fe4203021f9e2ad2.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bc4cb3cb71 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81517--1b3a8092bf5a03a85e069423986a493e55c04e655a5a082c37125b7a61ac834a.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..25475efaeb --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199294--64c7e6ed9ea48b453fcdf3ef5e077ad27f0ffcab862d43ec742a77efe6e5debe.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T1w_softseg.json rename to derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..707642bd5f --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9621--7c55a18563e5f6cae5d34255aa978500dd012a385d55badfa93395f4b8f6b303.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 35d9848db1..0000000000 --- a/derivatives/labels_softseg/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9662--e8b39c9df992c7456f2b9b08d827331d9eff10842f3deb75c955ab77633658b9.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.nii.gz deleted file mode 100644 index 016b9e1732..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354011--28d3c6eebd55a041f66ca2a6a13d35b6a6ae1cf2b59f730ce840dcb9d9a37da8.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.nii.gz deleted file mode 100644 index 114e76a1ae..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80880--3931bbe096cc209546d54e721dfc06a96f6753fdec8ad6a7993910f370ad4fac.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.nii.gz deleted file mode 100644 index 27a974a252..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183062--47f6a55f9dc5a30a238002ad5141b2a4864956f8d7d5211a4c2397929ba04019.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c2aaef622f..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37474--a865a7342719b726cf4a9cab6800b8f1cfafe3704e42046e9c2225e6fc39f84e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c5e89c0d68 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37441--b081cb0056b8276a1d09362fc0b8db6d2063e381ecfe4ac60020d0943582141e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b34c7bd182..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36071--995593b0ff073bc059bfc3353961f3a7d71c6ab5fca4c6a4089a0b7f13057cfe.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ccf180f5c3 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36031--4993c0249ba4307892afc9eb087b00c7c456ace3a906bfa3c34dc4f0095eb069.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0f5889571 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353981--a6b3abde62b26452847d3c5b5a5736ae091264cc9be9ba5c142ddc98da6b2fcf.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..74e0907393 --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183033--7145e2da8d7823650ca9045ca7090d0f23adf010e36530e179b20b238b185d71.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2star_softseg.json b/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2star_softseg.json rename to derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2eee31bc7a --- /dev/null +++ b/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9484--69375e3b62f1517cf06fb2f47b5d31663da4d18bcd1f5e866f4945165aecdf0d.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.json deleted file mode 100644 index 6d0515abc8..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5f96d12f26..0000000000 --- a/derivatives/labels_softseg/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9525--43c91c13efa91111da3d51c3ae44a2366581d4f3b3b26f98f1b179603c491ba6.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T1w_softseg.nii.gz deleted file mode 100644 index adee35a11d..0000000000 --- a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359155--8d0dd6c474459fe11eba35fd7b0c3d03925708bc1fae9885608725950a9b2e9b.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2star_softseg.nii.gz deleted file mode 100644 index 050850edd0..0000000000 --- a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80354--5ce11ea4011373af2e17d9d3a3cc4befce6fcf90e56aa130cc2382faeea1f1da.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2w_softseg.nii.gz deleted file mode 100644 index a938bd416b..0000000000 --- a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184734--ab8563084115cd74c3b6261f451836365c2ed0aaa0df8c5d6d89d9d9baf07761.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index eef0f9a2eb..0000000000 --- a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35680--ada3e15ecfd4e155654b4ed9ee13777383361647111c3ffe8001133f56c57f13.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cd643ffb18 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35775--49a3aebee2130c36ebd9ebf953636d1f2c3904bc0690b51370c8ac975cba6355.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..81390240d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..003dfd641a --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359124--be899a35de980976e872f888d935fe0f4643d662fc62806c7d4ac19b01fd39c7.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..aec905b363 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4bea713ea5 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80320--e0089ff3a82d197c16d7ee2ff01c43a90d9f36ddd7068fe7b93cef995718ba1c.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c5f83524c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a3318ff0ca --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184704--e3fa859f2aadd23eabb26c4ecfa533604103500ee4c3549083a43138050d3871.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T1w_softseg.json b/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T1w_softseg.json rename to derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7edf06e0ca --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9317--d733ddfb8119bf628ddb967e87ddf0bc7d8d8c961e77c56fcfa426184e588f72.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4868964418..0000000000 --- a/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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} +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9ffeaf7109 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84452--e035857c056ac184ea645693fbf79ff6caaa683a8b99b0db268109e1e948bf50.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c5f83524c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + 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No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T1w_softseg.nii.gz deleted file mode 100644 index 7a0bf77492..0000000000 --- a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s371708--b4a90fde57b2694e196a497ef05eb3b2f68494a8c9ac17e67f19179c1acfe741.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T2star_softseg.json b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T2star_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" -} \ No newline at end of file diff --git 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a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b910c4efda --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38063--0374f0cd49143754018e14f0ad38ae952607bc2acd509811d7489c1a24b886b9.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" 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"Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0a18595445 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36250--0de30b61be7d2b40f23a6d2b736d0d34e47380000e1fe81f25b89b5a8f823798.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..81390240d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0308bf305 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s371679--b1d22d5201f0ff9ce57ead0ce156d55987df0f5b7a665dbe263e4c32c5612c91.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_label-SC_softseg.json 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+/annex/objects/SHA256E-s82174--f49fca28710083989903cae672ba36d8fc310e1b0cc2df1d25ab4d5a6d05cda6.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c5f83524c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2503547d66 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s216744--eaf252af12e908046a179214486730474e0dc7e27206a9d77a0b96cf26b83c72.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2w_softseg.json b/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_T2w_softseg.json rename to derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a39ccd20ab --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9779--8b9a02eb5d33d79e3da4e068ec21ece6fbd8a1819ef99d368bb722d27b0dca1d.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d4962e77ad..0000000000 --- a/derivatives/labels_softseg/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9821--b29cc54345924aa116079a886d6503ede9f0f19de81d19c028dcbea5fccba86a.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.nii.gz deleted file mode 100644 index aacbbd29d4..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s374734--eb649225ddf416012a24c1f161b185a9b1ef15833eccff83a67cc13831ac6c31.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2star_softseg.nii.gz deleted file mode 100644 index ff6085e837..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83264--7504a17711c8dc75fd0977dc57ed7e93c7b9a5150368d1a313836bea92d15b64.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2w_softseg.nii.gz deleted file mode 100644 index 6eb1ba90bf..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s198217--cd847ecf09f6467403f6de48fa7abeb85635cf2a37856796c68347650a964db3.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 81c8abf85a..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38573--fb9d0dcf47581e89e6e1938e28305746c1f6ec45fd00e6b6099b6e0c411f35e6.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..12574626e8 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38510--d4171cf84d954f20edb288f85af2b7e3b304e10fb567fde368bc139260949cde.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b87a891800..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 098996f421..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37022--39d5182208389fbabe65996eb5b48a4235cd40a931b301f8a4327a1838df603c.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..af67db327e --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37029--e57d5a570cba7a5a9582f773b14e34bec4ff900967aad25c513bd9eb38722932.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..81390240d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..533d092b67 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s374703--7f341eeb5d8480512540d82f1e002d0385f2b4e3e5ffac3fd2b11ace7d0610f8.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2a1441fab --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc755f4010 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83232--5528349a606cbd6927f51f731baccf4f38c0f476af36587a27c041601a77907b.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6b497e79a8 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s198187--4f016f4d15d320687bd691406525e89793640e71e4c8e18baa61eb5b733661f4.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2star_softseg.json b/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2star_softseg.json rename to derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d835372079 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10187--c297385c3fed9bee779e3f4a1f469deb6a5b9a3e3fc59820679a7025ff8bcb3a.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index fe1fb43add..0000000000 --- a/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10229--1a2f87dcc45f30c2088ecc014c6885852dbaf89ce8d9e854c9730853055c0ec3.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T1w_softseg.nii.gz deleted file mode 100644 index 837376d8d9..0000000000 --- a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s372867--38e4d77c3a187cad6569e3df1b5314b22edba7b3045ccec496b9476ca37bc604.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T2star_softseg.nii.gz 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b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a2d9a53a40 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s36354--07b8c655da58e28d4246a659c4c4f9c69cad76124450979957e30dcd60f6d923.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..701a299159 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36281--63f82d3186ef6b9b11fec45af678b0cccf145db403549f3e7ccb300291e54eaf.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a2b67812c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_label-SC_softseg.nii.gz 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} +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6ddde9876f --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81212--9d88d6b3845ad10d871f1ff86d3c74a908b3d4034ed8d7839241e03f3388d017.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0509f5529d --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215754--4a1fb84d84874d843b4b8c5aed6fb80af96d870f1bdd4dc0871fe27ad1ce62ed.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2w_softseg.json b/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona04/anat/sub-barcelona04_T2w_softseg.json rename to derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..62820ef9b1 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9404--0b68bdf9add37256131560a690d15162ffbcc5fa5cc18847e45f49dad7c4f387.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - 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No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T1w_softseg.nii.gz deleted file mode 100644 index 4cd8db458a..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s376408--28b7df5f1eba0d7cd5fa529193093aba15d3a8858159afc49d8c84da831aaa27.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.nii.gz deleted file mode 100644 index bdb6fe2ba3..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83088--9a316d1c004ddf09e9dc1b52b3993bcb203723b067458b72990fd74c39a6b6e1.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.nii.gz deleted file mode 100644 index 62372c72b7..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197641--020154c1ee217b5b9670c41616b5a156fc036b2fd719c61f8b52ad2ffa5b74dd.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0c940ddb1c..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37374--cbf42a745ddbec75435367f45c8e52c418e86ee006f77d859c7a178c75448b5d.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd71f636e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37366--2dc5a77e0fa3f84688d76d9793cecdca463126a3307ae8b18be2660214cf72c8.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0ec8427434..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36196--626bc5b22a6136f129626e8a50df3bae652941b4da2e57f60be0ca60978c30c3.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..83390586fb --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36174--f00e8c58dcf4530c099488ea8cedf517ca7655b217d2d15870e0eaf0d64df247.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a2b67812c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..92f8c1f749 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s376373--3b6ceeab9c969e39220c37b6fc96b8589b4f755dfebdb87f70b0e8a54d3b4120.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2a1441fab --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7d59e42a0c --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83052--0b522cae0f3f76efc49f16db0af5d86db09607e29ddad937911e80dce376115c.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..84d4bacd1c --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s197611--e45e07b90c603411e4dcc42d38cf9897d3d7cc04c6016b34e852dea60b29552f.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5e453a6e5b --- /dev/null +++ b/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10018--387c2b19e91827ed799b79c9e1a64c2e66441c6fc1edb6c2d2dd6eae971cc8c2.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1d65437c6b..0000000000 --- a/derivatives/labels_softseg/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10061--3e2127f490da23315f72c12a68cd4375fb2c39893771b297d991803aa0d195fe.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.nii.gz deleted file mode 100644 index fc7ad40e7e..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s407065--24158b0bf8c51208de6a55733985d9296ace1a6ab230359886d090546611ef96.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.nii.gz deleted file mode 100644 index be779fb9bd..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s107652--f8e74d34664fb78576d53bc6aaed981e4f013f89ac0703b2f99cf1457f6c46f2.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.nii.gz deleted file mode 100644 index 2e56dd168c..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/anat/sub-beijingGE01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s179544--ff8ea1010606692f3e1c81bb98705c9cae664d368cfb87a2eff07c9cacc5dc42.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c4af2e0e9f..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE01/dwi/sub-beijingGE01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s72094--7c2698fe9536e0b076e94c6438118c3204ce3dfe7d210849e4d0cc9a94e99bc7.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.nii.gz deleted file mode 100644 index e22e03710b..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s402181--f04612ee8efa4aec03e54f91ba8063fbde49c79b917d8a9ae3443e5612451b06.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.nii.gz deleted file mode 100644 index b42d9cc950..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s99967--34d46d4b32482edd43fa06ac07b39cb4ab28a3f6ec68a132a65c827e3d01614e.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.json deleted file mode 100644 index d1b0b64203..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.nii.gz deleted file mode 100644 index 6b990eda6f..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/anat/sub-beijingGE02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s155536--5ff4a9e4d3f7b7e01115c60e14be366b712162aa9003e10991b772de3d6e1ecf.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b2946801e9..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s67236--54c3ff1ee7e8d8b1c1c2d6ad2a82004eb68ee0ab5b2de2e684bddcafcdfde247.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T1w_softseg.nii.gz deleted file mode 100644 index fb97d39355..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s405795--6dc4e3b915ff896fb7e90fd562fc16077dd3ea3345ec5308068d2dc2d2e794d9.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.nii.gz deleted file mode 100644 index d60ebdb33c..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s102980--0efa7b713f39110476835ea42c8054dd93805da811e04df96979d0a6f0946479.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.nii.gz deleted file mode 100644 index 2fab0be025..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s173248--c27b6a372846942c11838c1226d6ea963452727e5d3078d0d98d223e783ec907.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 617b400149..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE03/dwi/sub-beijingGE03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s71347--8f5683dcd26e0b84c38ac94d68f52566fa742fa3c43470297d419bd2fef17b93.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.nii.gz deleted file mode 100644 index 280cc56cc9..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s404327--b90ec6103c7fb7c56c3175ea3595bd70366b30b6aaa2f2d539bd6ab1ac50243b.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.nii.gz deleted file mode 100644 index f21b412cf8..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s103897--079388d98da289a740e31a8e40991d4eadbbe60ffb439a2089cda44008cf06be.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.nii.gz deleted file mode 100644 index c0ccbca5f7..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/anat/sub-beijingGE04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s178995--b88f4ec4757ebb0278d44c6a57abfe28f22331a66a179a4586ab972be0d9465d.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 33e1b04b6b..0000000000 --- a/derivatives/labels_softseg/sub-beijingGE04/dwi/sub-beijingGE04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s71699--f0ce647c621bbe5ae6c48d5cd1cd518593057b1c7fecfdde2589db19dfbc10d7.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.nii.gz deleted file mode 100644 index dac7ea783b..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s367428--782a7ea0f38854796065dac3db67a577f9052518155143262839eebf3fca932a.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.nii.gz deleted file mode 100644 index 0fa1891bad..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80833--09023e571e79ea1b2b23db33531e4562addeeb0242809723b50b4a8c1bebc1d0.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.nii.gz deleted file mode 100644 index 74c0ca7a2e..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s192340--b7b15b7698d4be41dc712a5d6cee3d509fdfb49605276d92259ea9ad01d3d978.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 218404b1f9..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37483--0baf5cb168d21e7d1f6e4d65823bc392f7b1e976a8e307ebf3f1820c2ba288be.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1bba264f65 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37438--2c48add58164c265a245e7adb4b3e6baac550ee6388fbbfb2d5ccf0d776cbfc1.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 64b3145100..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37484--76728667d4cd98e9718cd3e38d51881592d8f343426cc59736768962ace421be.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dc426d3786 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37364--51a253693cd313a58f1ab1ebf191c589327c86bf0e8c92886edbc620635cd703.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7370fccd52 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abb0c26fc6 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s367395--86dac99b5ea7e1ef006549c1c0e78e67ed13d4f03932b6a1dd6a70abbb4b0f22.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..078a8d963d --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..930f6b64f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80794--4f479739dcd641827be6dd3c5bd7ea90a8c52883917701702f56f1600e74d392.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c897218fac --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..954568c2f9 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s192307--45ab91da095c5e0866c0a7ffc159dea90c50102d9b149ad6ee7526fd76d966dc.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingGE02/dwi/sub-beijingGE02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5324f4602a --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9415--e66c26aa006c831716317d5351d19ad5598e6de185e32595d6661ecc70df81e3.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 12131e3522..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9461--71184426409ac8906bef172dd960567568359b9ea1a39669507260417fbd9ff9.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.nii.gz deleted file mode 100644 index 251495573d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s350619--bbda76e4e1e140dd5b9160422b8c8af44b16cab4589e6a96eff29ebfffc9be0c.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.nii.gz deleted file mode 100644 index 397c61364e..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79304--96c36e2b7e84cf00e161fe7d00456efb9ae1ad700ede363673bbdaad76436dc7.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.nii.gz deleted file mode 100644 index 1fccc6ef9f..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s177868--47ce14882f77ac3c3efd62daab1674b8374ba032d03d38ce86794fc59cd555bc.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 126da7e35c..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36431--fdb5d27653c5f60df29790614a122e0ed75c026a1c4fc2de94b8ef32d94ba43f.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..da90179f2d --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36408--88aefeee66755621a7382c3e9c10d28a6acc28f1b32e56e8c365810ee4404d39.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c0903d718d..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a613e0b3ac..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35659--5e775c0b5b186a0e7112d7bbae6725834578c4671f79fef7cafa58d103f4cf94.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db82965f40 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35599--5d33b1f8fe51a0977644e891d696d50392d8f2c900208a7c48ce10ab79709629.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7370fccd52 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a232384d78 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s350584--0cb8f43e48fa035cfc6b0a92884184bfa9bef9d3a5b88d34b8aa3764b4863460.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..078a8d963d --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..60a192f44d --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79267--bb20af290cb67c8331279c0c2ad57a0f9863205d4e750397c3cc0a2425d091b8.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c897218fac --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7f29571263 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s177835--ea97e52d919484880bd1c924587684729ba92a589f632071be367961d90dd1ff.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4111908a5d --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9182--095fe69e5f38ede4a214d85e03d86d839de9c93d669427c8a620384e5b25bd15.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 2862c52185..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9228--7f769d9e1c0b0c0026030450c12e19550f1f10af8984244a4ea446542edeac4d.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_softseg.nii.gz deleted file mode 100644 index e35275360e..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s370300--4337a3957b52df010f0c9551cab7de704fe1b8591cf2a0234910336ad730e407.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_softseg.nii.gz deleted file mode 100644 index 066137d19b..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s90231--ecf4d593b312b3e7ad861a37e608b298bf9c5affcbfe939ce67559d3cae3ea22.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_softseg.nii.gz deleted file mode 100644 index 3ed43f0b01..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197242--a8cdf7718ab7ac073047d9f95d573fe454da48ce783af02d524ca12a5f572ceb.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9627042f69..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40345--d66599bc8c5991c61be8a756001c4ef32988d0f0dcafce29d0c0093e4b45643e.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..276b65f34a --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40320--bc1ce3ed610eca38314b93d831d8defef74328852d039c49bfad226be880a21f.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7a1709c6c3..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39117--0228d2c0fcdf78d613819458cf23862140a4711fb1ebd39b48471b09e14df19b.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b67c6b50dc --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39087--64dd97c186d5d3a689bb698e983532e2be59e364565d5d0c1de18f79244db389.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6a96cbb4a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s370268--d34bb5b37001438bc4fa418692649a390cfc7a8182a9bdd0878c90adae113af4.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..56d8833197 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90188--d0f4226182dbf278927d1ac00920cb5851dda9dee11e81299312a7932de39b7a.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6e3c5a61ca --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s197210--6eeefece93aafe20e572f07c4a57fc8bd3e113b4f800f3c32da19b5bd47d7528.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T1w_softseg.json rename to derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c2b830d946 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7011--71d95a8ad7e87e698e1eb4402325e19163ed87b6f660ce5147fc83721e0a5208.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 217618c8f4..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s7057--a4aaec299658f48fe4142c8b244f0ca32af2f716d31637ff5c35da37df1b4d52.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_softseg.nii.gz deleted file mode 100644 index db058a08b9..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s266578--b506100f6b1c189d8a108fa31b3a642831cd4c1724369ba3a07635aeb4b83d24.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.nii.gz deleted file mode 100644 index 0d61989e4b..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79830--acd5a7d691373d381047586ed03bcc4beb4c5642452fd785d1cd9976dbfd7fe0.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.nii.gz deleted file mode 100644 index 9a2ff860d0..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s189157--32280dd9bbe252f11a64a658c1e033e8c396bd8ef0c2e80cfe522ee0f98f3576.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4aa2371368..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36721--885989d2a1b50f8fe80ecfc229964e58ee789f7bdd2aaf749c6a5f05b23a9879.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c87665d2a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36688--56ca24dd78f611a36f85668e82349826e0afd63a2aeb38ee7e466f982d50905f.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index fd0695de19..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35917--a1b3e1985191c6547153fecd1ff489cf307c6c249ae1281b6198f63f15af6063.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7931883a0 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35848--63a19f29cfcf2b517b781c4329ab1b4172b414aa4cf013e1fc57ae6558a18f98.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7ce1ced8a8 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s266544--294cef080ca68421aaacb056dd5ec52555f1555e7e0797d56adfd3ebd1095f98.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ee6cc51cb --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79793--4f2bbf1aa641ccb9b19d2a05e99a47f39d2d962986f448c0cf8b852fb9525193.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0d7907c2c --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s189124--a0b25214b52719f72685ab66aabf5cd616484359d1a45f7b3370f5e40b1f3aad.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2star_softseg.json rename to derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..44311daf18 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9070--5339ebbea2330526967bbaf2d6d6c1fa12e616cd10f745ad1582272c5983be6e.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f3a3540eb5..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9116--907ef15f3de9bee412f9d131b0dd7960e9ad8d61815a4e4da706085f3017bf44.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.nii.gz deleted file mode 100644 index 51527e0a08..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s372705--f40032c46915a4e4b13f3896821ca1375bb1aab354579b18622d169954ebf0e1.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.nii.gz deleted file mode 100644 index 6aa084375a..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81519--a5a168157d03a319c4f9a2fee9ba393cdec18da33a7e46a7334a72fdfa9d8a32.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.nii.gz deleted file mode 100644 index 783612fbc2..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213506--79e100869bac5feef790bd01ba6642b5aed987333430c7084dec9a3571bb9516.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index b926c10fd2..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37849--4bb08c807789f798e1115977f0a0aa0a3c595c1b4353b90442f0c2fe98c5e57e.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..24f53b0f80 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37838--0bc0766d7ce4b98b725cd089cefd31a4797135db246a4ec68c033d2c59f4c192.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2bd28ca38b..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36203--cc30124a0d43e9fa9e4d0aa9fbfb2a02981a904fc21964d3903d2ce5cf949ee1.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61c2f2c590 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36165--6d7f992d5b47d63a63c9a9dad95c7f9113def17248b8134b316ba6fc7a4db5e2.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0d086d3ec --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s372670--f81ad5e1cc636bd8d60fb9070e5c593ecd8fd69e73f8bc5854f0c6ede7f86361.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..479f17f487 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81477--7a1dcb9d7da1e13cf0d89d9a9d8b7d43df7e51fc67f73d07d16b6befe304af0d.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..316e7cf3d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213473--b69c0b5f4a9f2294d90e6d259d4563d599e3109803d5712eae58be478a17f30a.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_T2w_softseg.json rename to derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4055d380e8 --- /dev/null +++ b/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9477--8efcd27011f5c8ca0123a20030a439379a2af159a46577c4304b89a130de9b94.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f84f953f68..0000000000 --- a/derivatives/labels_softseg/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9525--0d4af896b0725360c0580c511bac6d234b5fb2fb27172f666fd2b9e5e2896e9e.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.nii.gz deleted file mode 100644 index 2bcb1f4634..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353483--d26a53c8393f7abe316441ac9e16c16091d027bff090ce91edc2e3f8c3e16e29.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.nii.gz deleted file mode 100644 index f175d84b64..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82554--840d7e7fdc5a34607f0c316f3bba3232da7595110bd036063a7147182758de7b.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.nii.gz deleted file mode 100644 index b0c2813d70..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/anat/sub-beijingVerio01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s195561--406d0112c9979e2400fdeddadf3e77bdc95e70c37f9b097d91f55ff517596570.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.json deleted file mode 100644 index 6846b7f869..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f18b79f194..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio01/dwi/sub-beijingVerio01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9951--6216d135e208007311b9afc694aa7e30c660bb30767ee105dac742857e45ea6c.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_softseg.nii.gz deleted file mode 100644 index 1ceef16d4f..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s343540--3b0bbb99a89597d5cdecf6d05269a6e2444b211d77fa6fd639d65945d0c302d0.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_softseg.nii.gz deleted file mode 100644 index 16e160669d..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80585--ea8439f8c29b84274689a95ba7b9057a1acba5af9bb63337eff870f5ff3063a0.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.nii.gz deleted file mode 100644 index 865c8764b5..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183099--51dfff09f38f8f92e368a4d0e1bd0aa35a45299d060ee3ad043a67f37f57348a.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 2ccc35864e..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio02/dwi/sub-beijingVerio02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9348--1f06de918b0519796a2c27571bb5573fbc9b9777bc1927f68315af6e8352c138.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.nii.gz deleted file mode 100644 index 558a3f3407..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s346246--5897f67fd7c3bb40ef230fd5efdd54cbcc05db23227d7d8a2f385228867bdfd4.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.nii.gz deleted file mode 100644 index 198d14c899..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80504--8b7cdb3a0539dc7ef1a8bcfc37be110ca2a597bf9683b01962c9dc0cffca6569.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.nii.gz deleted file mode 100644 index f33b7543b1..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/anat/sub-beijingVerio03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s187836--a4f441fe2a49405030fdf3ca59286d730ed674a5ecb58ea1e4ac4dc14fb67ef1.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 28ffdaad6d..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio03/dwi/sub-beijingVerio03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9363--aec202a1e34086d46211ca2ca5d34995d0ea5ca937ac96da8ddb9e988b3b5680.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.nii.gz deleted file mode 100644 index cab12184fd..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s348472--359a9b97c1e9ab529a7863a85027b6d851b2f0e6c53704657bac703b9c57cbc8.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.json b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.nii.gz deleted file mode 100644 index be7efa9076..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82627--206918c1a56201b0806cf73ecf3c7b17e6f937f1066f7fa91eed61fe3e953ac0.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.json b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.nii.gz deleted file mode 100644 index 9cdabb9059..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/anat/sub-beijingVerio04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s192574--d990c33dc7c1de1bfab3c49e54248a09ecde56c90e9c244a51742b4434510d42.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index aaa866ea97..0000000000 --- a/derivatives/labels_softseg/sub-beijingVerio04/dwi/sub-beijingVerio04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9924--dfcd4dcd54b4f6396a171ac7281660fc8dacf738337ca5f6fb9bbfa488432a4e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.json deleted file mode 100644 index 07a7f11ba3..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2021-09-05 18:49:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.nii.gz deleted file mode 100644 index 87ad9f092a..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s698794--d60df185a9a363748248f9b5dde7e1fc7c23beb14c0fda9be70dceba71596bbb.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.nii.gz deleted file mode 100644 index e119f9e47a..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s351634--80beb917e42393544062e9156b49db98ea4ca030472dea9124bbe427bfc4560e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.nii.gz deleted file mode 100644 index 35d8eaa50d..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80235--3f6f10f67c28d9741d41a3809af7ed3e6aa86292403a0af109ba6665cb1b3446.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.nii.gz deleted file mode 100644 index 23b197c491..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181111--9bd41e5dc5d99bd20c076dd65abd1e68a5356d8221e227716d90664f7364e025.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 65ef31d1bb..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37412--2c23fc845c6aa38ca040358a2d475cfeb5086602083a80e073c1ef5e8ff45077.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a5f1378669 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37349--e9df26587399496437c1f09207bde05fafcb57df63de041a324c768998e4c046.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e315750e9f..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36155--e41c91471c305cdb08b49df8bacb544a09620613f9b53fbc9de645ea547e7391.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b198f9e4ec --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36153--1a2b72f803d4a8c7363e5ea1b96123a99a59a92bbd99c3f74a38f71154125608.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..8037df508c --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d395c490cf --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s351604--4094266f4da3e0a33e7bc09d88c56c6a554775b070ecc6437e1bef0ccfcb3800.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..974bc14cf0 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..755ee3d82f --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80203--5a697bcb34417952dd3716940f6a6bd3d8931c242d51733154500ae29c3902ae.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..ff69d4dbdb --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fcb1d062c4 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s181079--0c8f8780f5d91e8e7ba9b4f09aef571fd49d70324536218609cc10f92ead6a34.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T1w_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..810a646b4d --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9295--ad38e31cdf076d61976567dd59260887b29a3d4994b6b00ea72ad554b9bdf672.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5f48bee1f4..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9338--a2ceed965043dc6002397814044006b6fca3491b40038601a0b3db376af24073.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.nii.gz deleted file mode 100644 index ea34000792..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366176--c1bd2e58a6084353c4e4486c4b81cc5b56af46a3068f07449b87cdc7bb00ff71.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_softseg.nii.gz deleted file mode 100644 index 87d6065027..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s88556--c7bb6ee799f927f942f68bcd8adb5aa3b5a17b46e2b06034eca7303b9a1cb6bb.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_softseg.nii.gz deleted file mode 100644 index 76d1a0ba0d..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s218280--297cffaee0a2d5e01467eea0bbad79bbcfcf7444749bbe607b5b6ba012680a3f.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9a28e9121c..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40441--c1d731095910397e088ed163984b4123b0fec3e439c0978ffe22aad7a3b5ce9e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c472269a67 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40410--c60d794d467a103c245270da7d90684ee1c0c3775bc8b9cb11e75f6d847885db.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 85b3970175..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:06" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f4e539cd2f..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39526--32e654873f426cc994bed40b4acac61aa9e8f4da80376a2e5579033f78c0d7a5.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..70ccf4c55b --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39511--503137ad9d4aa4c83bb5f5fbef75b014cec1393b3dc5c585062f752a1502df39.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..8037df508c --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..90f5c40335 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366145--9741de38debf499f36afd2a49c0c49f43262242e99bb6f1eacd810809bcaaf83.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_label-SC_softseg.json 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+/annex/objects/SHA256E-s88525--b4c64e3b2cadba1518a79579d65342e60d83f6bbeba1b634b6c1e2c3363d1d3b.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a2e761249c --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s218248--672563ad8311e4a5dff0d9b32e0d16136525aeebf9f978c648c9cb5b8532adb1.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2star_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d1b6346e8 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11356--72b427f430d3c830cfae5fba8154269c22669199a0792181e9264d0058ff80b7.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index dbb0e95231..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11399--849697a7a1632a6f25d8b443a17e9dca88eda6390c4f27ada49ce9e0936e5d48.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_softseg.nii.gz deleted file mode 100644 index 3fbf756776..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s347098--aab2bebd5070c81be1b3d5b026f0ba62166ccea77225cc4ca6efe8625a459beb.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_softseg.nii.gz deleted file mode 100644 index 84146898d7..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79117--9936dda30c1481ff01359a8f9dbb86764eaaa4e84671c94966642750f5cee862.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_softseg.nii.gz deleted file mode 100644 index cc66bb2bc6..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s179072--4d3864e56b1d467c8678e9e63d0f2edcd763de9eee89125e85eb19472823e681.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index e4f140595d..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36961--f8bf4a87bc5d7b7bde6ecf0d9654f9190a21a81bb43523b6f9f246c8d3cf08fc.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8a0cfbe71e --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36919--6abfaf418064394e9e0da77b0ca56dd533b017a190218ab54fbc4e248f6aa5e4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0ebf2f0d3f..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35858--2f270cfc53086480bd22aaa22ed89fa6645c94fbec780c6dc11a7aa4e4516b4f.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..372e381bf6 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35819--53c6e733b21dd11aa690ce6a472f437a23517f6ad541c23f3119cc09de35da11.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0ecd094409 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..80245b4a38 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s347069--5a42805f5dc7132bdfa77b52c84629a1aaf947d1e7d7bc7c182689cca9c4f7e8.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8507c1397a --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79087--a84c45ce9ca2fe6e489ba558a2204754db848be2f2568045f88fcff862c8a804.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0051f70a8 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s179041--670defa83d9004598ff7589eb76337e2c6ade493e4d69328bd5f25f9a736f2be.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec02/anat/sub-brnoCeitec02_T2w_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..127285acd9 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8903--4b773b182944fb3bf9c1bafa1e1dffdfb3027d9e1986ec20a1a2464e2e9aa560.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 0c22d3e451..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec03/dwi/sub-brnoCeitec03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8945--ea5b568120590ba7dfc62f0bd307dc22b3d3623e5db73c11976cedc9837c01ac.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.nii.gz deleted file mode 100644 index c81883b5a0..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s350283--6f1bea2a43ad4241d249bfce6f55d3b01742c1a89c98b3aca8fda959aa7d6439.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.nii.gz deleted file mode 100644 index db7aadb223..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78732--e3b024d0375475b92bf247c23580526a192bb8fd1f7cf095e629f2d3559fb809.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.nii.gz deleted file mode 100644 index 0baedd5c20..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180745--a87ed141033f1ffe3bbe6beb2a7fe4cdbc9d0dfe7911e5e4e8ad9a9780ce12ec.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4325e01c8d..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37088--6a31eae0ec580ca1212121e79f4a92741b1343ea982085f18f0e1d0f9623fe69.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e63f1e3dcc --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37057--a8424b0b062b198c5fbbfc793b0e93ff98a9abeee95135b2694543c5e7043a57.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 818c9d1b0e..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36372--52fbff8542467ddb71a35e8bcd51015c77c39bec30635b9be7258a0bf72414b4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4933669f59 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36371--1efe25819881956a4dfc4e455b2eeedc2666ddbfffa9cd6b73ccf3cceae678cc.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0ecd094409 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb87270024 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s350257--15c9df251bf10b2b491f53238fa4661f2d117a89717245e5fecd3374c45e071f.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b4de6cb9b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78697--bcec2d693bb055af2551454ab232e2c2c4d2308a5922c6d87e50f185fee84625.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..681e474edf --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180714--60166c349c0500f6881e0803f4032a3e8ceae573d2374c59cae7f7ba0a51b422.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0535695b69 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8835--1eac2d0a22a1440ee4c12b578b978ed3a5f9ded79151db0dae2a6eff363dc5a4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index beed0fc2e1..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8877--93445d1979301355b2abc0e0f0d2887ae3231dfffd3ce8395d0c67345af4b278.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.nii.gz deleted file mode 100644 index 8fb3a1cf38..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359078--eec802e938fbf6c626aa3b8d68e750a9d4f175343e156d727c8c8cbcddc2a81d.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.nii.gz deleted file mode 100644 index cfc6f127b0..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83269--fe5211af225ef0f9a4000b8481307b2b5667671bb7102293043affcebbc29b04.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.nii.gz deleted file mode 100644 index 0728bf4e34..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s189417--bd4de505659d181011ab579e488dcd947f33a850bcfb124c86b9909481f5e037.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 82143f03b4..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38735--1af70f4f848e1f6edff90fd2cd05e9aefb45245fe52a88f6c54b96507a6d3091.nii.gz diff --git 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b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38706--2afcc0dc44d3da803ff80f0508e4b04f241a4b5f8a501af614f3a8b4c33adacf.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2770d7c109..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37331--a6ceae1b35fd7f3757a336c1cc356a44883a05978153506cd344680ac1316c38.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..59ef008198 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37333--828c5a0bfc7580607bc4fdf2946ee9af82753d0f34c5994d23ddd04da3f797db.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0ecd094409 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b64ed0343f --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359045--da32edd1e03aa6a261d3a52f491fe1a570db84515358c7cde6d248bf0c47a481.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3615b7bda8 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83235--3e3bf18f4dfe374b5458248adc414212a6d502ffeec8d05737c4b8334037fa19.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2bf83de947 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s189389--ce833b599666dec11083837d82e8b2d6f4ee781c2d7466a04ce2ae29e281ddb3.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T1w_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..23719fd49f --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10216--1a701a25b112d3f1df56d9597c864cf1ea4c3ad03ad669107d64da11ce13d037.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.json deleted file mode 100644 index a4c5e74415..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:07" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4b03967768..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10259--f9101f10759dd5091b3d004a2cbc81ac279bd67d7c937de8eeba0be70e85c1b0.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_softseg.nii.gz deleted file mode 100644 index a89c4abe6a..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356809--c45b4a20a39e742d98f7d6f3ee496a15cca2d8fb3973303b106c95acceae8342.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_softseg.nii.gz deleted file mode 100644 index 258610cd6c..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83307--f351f7cbc06c4f4840241d9b5c9ca8b16371558ace8643604d24c190a8f008f0.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_softseg.nii.gz deleted file mode 100644 index 020f190773..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203472--7d9ee2cdf239e2bd49ba0097d55b9201fe2474976655706a3d3b14f0279a9924.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5552e0b5e5..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38709--a3e3043ae2be5d7f1b90f5d555dd37b3c4cf2aad16a7ecec21566e03af74e1a6.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e38c058c11 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38714--f13d0cf062c586b3d806b7282ee26b94df4b56f1bf8882d89c3b62736bf4cd94.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 53e9e5c3f0..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37508--93a1d88bb3b1076460b64f5bf9a212e60d1dae2d56b2575152ece157185f08e9.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..15d18f9303 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37439--9274918144934409629de39b4456456a1f73e72756c35fda541f00e75aa7819e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c03d83de9 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6f2aa40562 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356780--e1fc0ddb5d5ebc70fa573df3485ba5dcc7851a2f3ca096ae315add812ffaf39f.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..14365307fc --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..345361c4d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83270--c2b7fff6b84dd6563d8d443d48afd7f5a95112d60a2b62eb791f9f3bc961606f.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d1552c2ab7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..135342a325 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203440--e7120ff63d1f9db187657e3e25edaa319ddb4e5fd3ac4563045ca7c63a379429.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T1w_softseg.json rename to derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3fddf858e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10096--871e62ee048ed09e2204979b07472b15a99c65f7ddbaf93954bfae6331faeb93.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 07c3a84ef5..0000000000 --- a/derivatives/labels_softseg/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10140--e409c90a37ef7817ec33f60ddcff7cd724d6d1274b5f8f5378ef6ce7bdf9d2a6.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.nii.gz deleted file mode 100644 index 535f4412ec..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s414771--801f20b448b198ae839c279a4609a05ea4b9aeb6b001f92d2785bb162a0379b9.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.nii.gz deleted file mode 100644 index d5a9d0270d..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s105493--84f8c85d0c9c1a647ae8918ce842f0ad906aeb44f8cb7f7ef15d19bb22f5ed30.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.nii.gz deleted file mode 100644 index 0860ddd3c9..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s175488--7c9a2f3d922f543ca69cda6e920050839b21f482a454017c7a19852fdb410a92.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index ffafbd20ec..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s59965--80035d1299b9ed71660706763bc538a4716ad69b21076a8a46db8c9877a002c1.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0ee05c5546 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59879--0e9245050070d1ac358ee7aae7b07e4763fe5b63df005eac5a08850e8cf5735e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": 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+1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fe14ef0d9b --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57571--82b880675ec61345d810eded8bf556f0859412adfb860aa89db00b734655579c.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c03d83de9 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..50de7a7317 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s414742--6f257e10bd7cc60a04beac72594286e5c8a147d56f9cc612a23e7af3267d8590.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..14365307fc --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3461a69280 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105462--de1b9916f13b31fe937826579105565dfabe2bea0319634636b530c52340ce79.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d1552c2ab7 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..279eaced48 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s175461--9a47c0dda7b09bf4f2718f2cea5ac76c1785a120dcd882cd030f3f1f7dff8ea9.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2star_softseg.json rename to derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..83bbb0a226 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74007--0ef0b4ef1f5721c6a78e43f6060485badf4fffd8fffef50773213df917fdd5e1.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.json deleted file mode 100644 index b8b40fdd0c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:08" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6fa330fb6e..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s74046--aca1a9f4ff937abb437ed3f9a45e85712a89520522c567f36181ebf4acc3c2b4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_softseg.nii.gz deleted file mode 100644 index cb7c6eb63c..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s415691--d28dba9456cb40847f90c88042f3dc575743fdd7fc51877cfc5cd33151cfac2a.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_softseg.nii.gz deleted file mode 100644 index 0b9d56dde5..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s104854--a769f29197e36a4ef1d18fe03137a8d56ae0e1da8c08e57bf6c2e3e4fc3d896a.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_softseg.nii.gz deleted file mode 100644 index e0c6396ccd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s196047--d50904b7cc8c071625fcf3bcdb84eb0fc501d10297ed95da12a32f7e8169cabf.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index d8263317e0..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s63139--685dc285e4ded1040379f66653fcdc86edbd4a27f7439b9638305db46b8f89ac.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ac8003a78c --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s63093--5e41166e8de8186a7f34f7afea722cbc1e756a1faef76dac07ca9350c6b6bfae.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ae02064ade..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58801--abb77c5f4a5c46c00cb272d8f3a9cea8869f36547d5b682ede1c04891897be3b.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 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b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..89c6fc2e29 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s415660--92e76db6cede8ad9180cefb87f9e216ad1c2ecaf0c88c03b4e42f5a8aa8dd502.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4e8f14d48a --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s104823--67500c503e265e77d8e9fdb404922fe8d784b3ca2c3d7845b10dc22d4e112910.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..781e9b2906 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s196015--ff7a4be6753fcaac6a81ce55ca5b4aaa6a0497506332dec2a3a2047d4a3a5c65.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T1w_softseg.json rename to derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e68654a928 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74629--039797448d0035f42880dc2f211d517233bcef6b908ad2e6600c02615f084917.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 859fa24919..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s74669--e3aa072d2cc27da037ea9afeb1b792d6c792650dec87d5a722b6e254a9e1c7f2.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.nii.gz deleted file mode 100644 index 3b2fc02f27..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s415318--930e54be381d8eb071773a34ba590dee4190b01580a2964a2cb1ed007175c665.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.nii.gz deleted file mode 100644 index 68b372a650..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s106533--fffce53cb9ccef07ad1d008f706b7fb55ac8426dd55066b56774b811c938e845.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.nii.gz deleted file mode 100644 index f83eac5cd8..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197006--ff3f6ff106b6987f00552678f9bb971018ae56c9bfa8fa99cbe33f953d642254.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 87a41621f1..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s62160--eb6b761691738384abafddbb080554bd3b1875988e7437ed5c01cc09863b1863.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c80f83d153 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s62100--b1a84b5ff82582928347141898f9b15e277350f684bcb4942d7c6dbeb2c68937.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 29ec1df407..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58657--8ae3491b149eecb229e12f73459c668094f6a3e736c8f4d2d0d1dcf0db1a64a8.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b797fa459a --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58590--d7bc53ed47214523f83a0f4c109ae1720d51af70c269cb55b69af6a91d969a54.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eb8511f376 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s415291--9af7b3d2a1cfafc6fd61f67679a7d55fa943d27ca022ad84c6696b8695ec9396.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a134f1543 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s106501--add62b8c92a6219264938acd3f8aa190cb3f9b75523ca3a299d9781f98c005b1.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f571dfeec5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s196972--23496ee31eddc617f4aa503db5216166d2d78a37e8710232d828d262f0ba4e8a.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2star_softseg.json rename to derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9f3df32aa4 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s77789--bf7aa14231d1bbbb7c782ea2bc05e1ad0e2e2b8dac8577be4b4c1902c95f8c74.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d5df434c5b..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s77828--3b78cb9267ac6ca344624e4997671ecc989368a61d1b316392848cf53c5e7a52.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.nii.gz deleted file mode 100644 index ebf7423689..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423979--957aabbb3a543e67c44ab3f087e237610e0ead335944256c6a218fbe13c09ef1.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.nii.gz deleted file mode 100644 index e8f34a9f25..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s105807--b190c496224210641e438bb0506952770775615e69656927fa6190fe11d4ff38.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.nii.gz deleted file mode 100644 index 2c1f234210..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202857--8b63722b7c1aa20669a50eafc2529aaeca0875e643288d68230271d6201d8f77.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index b1f599e7d5..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s63061--b163d4c037e4bba61f132742d4dba45a06651bd039f7ddf0dc5f447e2af19c8e.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ff524fb478 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s63036--65bc039709d142cbfd2b8f8e155a291fd35625dd228da7d9282daa5be7942b4d.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 27d36f3827..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s61196--b2edbc36c3c3bf40c84e4491a937b8d3d75e8f0ac2443ab4ab17acbbdc8b0b6b.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1902a115ac --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s61159--b798519a181b125535d69842ebdc6fd06eeb084972c244303a481f44679517ae.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..55bf435bae --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423949--1f476899e4c7531c864e9ffacf0a99a4fb0c3771daa2ff37d26ef77971bc2819.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1638ffd0f --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s105775--ae8ea539d3e7438916e3c002ea2e848aa7c411f7c3f0b6264b19e0425643e20a.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3306cd3a10 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202829--2c9f5625594915a95aa617d0db7371c3e533eddce50711e1f85aa5d8bbf87062.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_T2w_softseg.json rename to derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8d608b3484 --- /dev/null +++ b/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76606--e4fc50f53e466794f4d2a2058efdd01d9dec22002139472194d2d48f7a26c41b.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.json deleted file mode 100644 index eaac26b8cd..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:09" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 677542b33f..0000000000 --- a/derivatives/labels_softseg/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s76646--1a71d8086e53d5ab71d7602498d09c71be68473366913be69962854799874a51.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T1w_softseg.nii.gz deleted file mode 100644 index ee596f336d..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357616--0ffda71ec75389608e437db9e52f8d59c8490297d93f759788fa353bd0fa6372.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2star_softseg.nii.gz deleted file mode 100644 index 3da9d59525..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84748--39e79dc76a4af47d7f28367b60d224f63eadbaa46858daa467acfe1a24c4cef1.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2w_softseg.nii.gz deleted file mode 100644 index 5cb213ef31..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206547--0fe26d5706dd2ce769d0b6b2d951127fa1797fc3d005efc83d10687870e1fb3e.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f6a8ee66c7..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38970--a40e23238f93559595dc22f68e1b5320d3b6a3a81f3a186d0a479e105b315f56.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fcd1117e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38964--3a867227eab5dda83891b70550bfb760d1593943ac33ba0ba909da02ff81d975.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 5c547adfb9..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37460--bb451dc53234b2300ae7592a4d8fc9c50b481f42df29addcc4155511c213c67c.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f000cf5403 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37416--b44c78d9f8b0b83738e3c30c257af75060011afeba7286a956fd2f62c02adb78.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..edfcc4321f --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..177f5bb09c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357589--8ed5cf4b8d2340a0a72494b701cd312f24a6310f7463716bd81a1217eb40df2c.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b406aa8f4c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2d4e28d5f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84715--de24c79a5cfeab70b0fc34d512cbeb38f0ffba5bd720585702024b3fa3d01a2a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b3cadb6670 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7427c12f40 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206519--8497ec8316ac60dc74a4a1141b34f1ac346f7ceb6583e7bf6487bb80672f3e1f.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T1w_softseg.json b/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T1w_softseg.json rename to derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6fc9f7977d --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10556--d2b241a3a7059ea4abc773d4ebdebc2d6c7b78aeacf78f0823f480185991972b.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d8eca7ee92..0000000000 --- a/derivatives/labels_softseg/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10596--5b7ceaace8aa929654cb8e91f32cd2c4eea2f797a439b73b84aa51426c6c4f57.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.nii.gz deleted file mode 100644 index ab308e8173..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366407--8ca2cfbcb8d3a984574c04e233a686dbe9c52741a189a0cf9f0428c140793ee3.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.nii.gz deleted file mode 100644 index 392e211b9c..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87030--b1f1d18aaa238f53015732d9cceb7577126295824c6d0b350780b552be06762e.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.nii.gz deleted file mode 100644 index 5f404ee4c0..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s215043--aa2281b0efb82a58d645a4460c237349a52154e21de00ab86bfe2f038fd80335.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index bb5fa0974f..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39852--f21ccddecdb4d34dba103e76f85c1e2d3d6fb71d05aae54cdbfdc37d5149792b.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ab8117423c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39806--5f4af6bddafb60c5556ce60cd16127d7c00c3e68d91aa5210d08b33f136304a5.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a3945ae4e3..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38378--dfb8fa638908dc40707cfd66912b008ce436edde7cf5ab1865c243e3859154bc.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e2e4b714c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38369--d3edfa0fd3482da0675fa6ac683b5a287416da5cf95a8be52c46cc1066791e2a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..edfcc4321f --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de80d680fa --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366388--dc5cb2b064f7eb506a1b99d5f80f9af4152305643a1477730cb6f8b372380a61.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b406aa8f4c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0bde3e3257 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87001--b8319845ff0643e60cb28abdd50ed55b138045e508f97ccfaf0510feee43dd15.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b3cadb6670 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0cc3adde38 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215014--84645b4518b298e7c364e81c918aa770438e5e9c61edef0dd37245749c5090a8.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2star_softseg.json b/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2star_softseg.json rename to derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d91b4adb54 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11197--c7f56a4a4e6ee1e581a4bac118b823327d56259e9adf02681b264dd37765fa7b.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1975b5b13e..0000000000 --- a/derivatives/labels_softseg/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11238--48e74522772145a0785d643f1b36537700531088e67a3113f45c7a74ab9561b5.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T1w_softseg.nii.gz deleted file mode 100644 index ad43e8360d..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360990--239c702c0d7f29517efc4cd4a99541b95eed775ded887a845935a5b2fa7ea976.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2star_softseg.nii.gz deleted file mode 100644 index 9ec68332c6..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83539--9300bf48cd34bec96716006e492409860c3806a822f80dddd8c131c9f40df6ce.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2w_softseg.nii.gz deleted file mode 100644 index 3cc74647fd..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s187288--1468a03da5acfda643b83814ab65dcfb75d3fcd21bfab48ee4e8c85761675282.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 5c91cc4892..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:10" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 7739be61ab..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38421--834f690cccde480da3e0383c8f496f78ecc5cf026bcda55d229e029a28f81699.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1bc0611c3c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38420--78666b045598aec2d3d1640af828db0ba6c36732489b798e31a878bfb53dc321.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 5b76096ec5..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37285--9734a05251685e9199a1331e8b66d4fb0657975b370a965cba0773e5c9a2256c.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0cf8979dac --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37271--afed38cc56f4db6008a179cd1e9012235b1cb408a2cb5bd2bd12d8bbfc0820e3.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3fe7122bf4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360953--0c208e0207a7273f1faff175b0896e556605d245c34aa12e8e3e4b0ad98e7105.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..acb88cf3ff --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83509--83e884b5061fac8d116afdf310dc56c96dd86c1ad45677e291380657a189805f.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d13bee2f60 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s187261--728fe1318513aef5eb72cca55b77d54c6c79d53cbb1a9ce759a2f5384e94a30c.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T1w_softseg.json b/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T1w_softseg.json rename to derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a403c2ee7a --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10199--e439507a7aa8ce3ddeb01f14b749f1ad8f26c7abcf961edf43c4fc62aa902a38.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b615583c7c..0000000000 --- a/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10239--2d832d8061510257c490fe45d2fec420dde3743f60f821e608a7aad6c8ddc8e8.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T1w_softseg.nii.gz deleted file mode 100644 index 84973b9a69..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368932--4346fee625deb41fba108f6f19d938caee842455f62aed56f1e0a1cbda243634.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2star_softseg.nii.gz deleted file mode 100644 index 5cfdf046f8..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87285--b89184fbfe42325904e71d23a7eef8f828538830c020561195b4814770d69834.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2w_softseg.nii.gz deleted file mode 100644 index f1dbca1ead..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220671--3f375e77769d5e6fa59e3d467484e931602380c527b80fc8697b28cd6740953d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c9400b3410..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40701--8934d54733aa8b1f2706555608b72de35cf8f85492908109b96a78a7495b9ac4.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8f152f612d --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40685--7349acf1ed7f59e449c4264a2b67e310c0216655d6a3e97eed25535c5d8ff45e.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4922ab9774..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38693--c4d6aa5d1b5f0529f8ca4f41beaa41c66431477a7af3ad3cc9c5389918a8b391.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e341871d40 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38616--f9e333372af8bbcda76d01b781ad1e6e764a38639819e445de8ae6bb51ca708a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc8493ad6f --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368904--0a888d0d307c9081277e01cbf4c6c677655e8cad95a4320981002fc74edc1e4d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..129782bc8e --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87255--e6ea6286fb5e926784edc27ecfb8efdb8bd42e850709e8a635cf96c406fb7256.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0d201c1b0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220645--9755451a75abe1c63a61c137d9826311d26b3dead09ae48d527ae8454396a05a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2star_softseg.json b/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2star_softseg.json rename to derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8a8ede31d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11025--ea259c0fe9a8ad414e29c18c9651c21c1d7232bbd3d92244fe0db1c79ab4d32f.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce5b0ac13d..0000000000 --- a/derivatives/labels_softseg/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11065--361889d1864c671500db64f243eb56d0989326718f90cb2d84a1a3fb3f4cd048.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.nii.gz deleted file mode 100644 index f52b4fb37e..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357491--240161b4c3e422abb096828a6677327025cf89b74ed8359a0ca0a40730395036.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.nii.gz deleted file mode 100644 index 6c91542fab..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81559--6a9e967c358f89c204bd1086587ac98082b823e70614e9e64f758d6176694741.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.nii.gz deleted file mode 100644 index cf80ef8640..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203183--a00a99f39360b563c17544136355eb88e16d17c64134a70ddd000cc4925cbecd.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 94ce102d6e..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37685--71c61cb1d420c19c1c6e2a60999794c164c04265f7eea8aded64088c2787b6d4.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b126de0fc1 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37704--9ce4a4bc40442110bc8bba7f9706f18d46d08895286e89723919541338d71baf.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 90dfcea3fb..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36425--02a48b038ae576c34f7cd49a7991315363625bda13a0b548af3118ddf56adbcb.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2b988931c3 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36344--8caa9679205f5f88606315aecd3e431f705fa98ecf08d6106037f59865fab1e1.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8c5f378c77 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357462--92e4e8a95a9ad794fe0999022816ada30df69e8381661f1b85af8bbc9fed3506.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..87d475c3bf --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81527--adbbbf1d9cf3864b643702a72a21e8a5d4346c8405763e476c7e60490145a44e.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..68d1344b70 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203153--58d97f4c1cd2b852bd027fb59101a2a531a39d7038ac052e3c497560ab5f1fbe.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2w_softseg.json b/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_T2w_softseg.json rename to derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb0dc13a18 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9603--ed9790ca525e87b9e6bb1a439e7d6defa6d395c1476ad8f54a16663b93ebbefe.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 580794b2ea..0000000000 --- a/derivatives/labels_softseg/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9643--ef08a23f681c1e5df9d8e40445c885a07a85345d489eb5ea5c54c4ff0e8c881a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.nii.gz deleted file mode 100644 index 5e69d09f15..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361653--a3d44741be7345794c1d8c57e6506d68a7b2bcdf5e2d37ce811c90e2418dbc0b.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.nii.gz deleted file mode 100644 index a3de98ad7c..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84987--bd9d5def3b7e33567b6e852943b0473cab980ef8d88458d37a03cf94aa752e7d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.nii.gz deleted file mode 100644 index 79c94eeebb..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s210925--35b75c4a9e60508d31fc6bff17a8c0b78fa237b9e3f01ef36680273056cc2fae.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 41ac8e10e4..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39107--2da3c251279f5d00cd7ed3eccb39de2b38ee6d18b3bb594b17bcac12e5aa9a7d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..14696bcff6 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39064--b7e324a4bde4670885c01b4278bea3f3da24074d39c814a6330acb6cfba40ad4.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index cbd4de441d..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37236--07f8fcf19f51f7b01eaaf978679611db04a7a4e4a8905646faf3a5931e858930.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f18a0809ef --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37232--cfc638eca1b7d4bb17684d229fbbc6d1d03d6be25a68cea94925e7524013d7b0.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fb2f9fc6ce --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361627--b46cf882a43bcbd6368ab33ac77e198df7ed37a010a174751a51d8180d362c8d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bbf52b0473 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84954--9e8ff306b13f073eee67c5dca6e8d7eb8bafabb9d1ebcbff2d847e0f4efa13ec.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6e4c39d390 --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s210897--eab49ab75a6fd1c65dc287eb9698d6f5e1ec5a78228444d05a58633775dc9574.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bba5cf59ff --- /dev/null +++ b/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10610--b7b0e0f8391908902b434456f60c52538a3560a6886ea63d4dee2711f02b0a8a.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index eb4b2b2de4..0000000000 --- a/derivatives/labels_softseg/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10651--63dc127a6062b3c3bea65954b65fc3668c78be12cb255ed375e1f84150d2cb3c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.nii.gz deleted file mode 100644 index f1cf2d35b3..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356387--3fb865fb89915673f6d6802f5a481e0b52839a01a2e5fcfc9b2207df2b332e0d.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2star_softseg.nii.gz deleted file mode 100644 index d61b6e0451..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81620--e2d345c8930e284cf6a8335c6ad8b28a00d7616e618c83e2d29ed656757c1d4d.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2w_softseg.nii.gz deleted file mode 100644 index 1e79f5c86f..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202062--0fa1d2be3fdb7fc234182c8881b2f986ab05b8c0cffda9bd3dfabecfb757f5df.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 7bc4540966..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37874--45345dfbc3ad2c84498617575b517a25f65566aebcd4b1c86bbf31d658419251.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9f95df578e --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37832--1832f91c19d64f2682a9b5cc18d29e200de39c2c74e930e065df85611749b8ad.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 1bcf4e0cb1..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:11" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 42a752cb97..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37539--e79098d16c01d7fe5ff2b04d537d789c8b614256beb2c0aee3d242661fa56017.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e6113b894 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37482--9375b752fb6b5464b5172a8f68228e67aa7f788a1db58fd4910d5c2718ccd1cf.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aea34323cf --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356361--bf418cf1a96b92bb9b66ce27d5a25c23d620310433edc6386876028cac299eee.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7536e0dba --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81589--05d1bcf29707da46873d92658191620bdf538f7817734821f8b336e83d325dc1.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b4fd43f7d --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0fc52bd2ab --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202033--6738509af6a3f1b46e0d8828af2cc8efbaecbcdd722de9e3004b2e55015948a4.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2star_softseg.json rename to derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b49dfe4cfa --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9726--4d57ac6a5d5c4cc39903175c3ef902dea780c70af6b9c383d212f4bba2868237.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 286f095b61..0000000000 --- a/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9762--91b0b869d817bf6322e4518170a36fbc6c00640e4873e757f72c5f9b4d15381c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T1w_softseg.nii.gz deleted file mode 100644 index e3d00caae8..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365692--084ced15810fd7988055a7c44e8f074752db4bcd33cd5b1d63fd5ce140dc46a8.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2star_softseg.nii.gz deleted file mode 100644 index 0d91ef9cf2..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87365--091e581c32baa5efc4a0b73fffc71d1b96f5c858db963666efd6f9eadec4eafa.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2w_softseg.nii.gz deleted file mode 100644 index 33d9b3d511..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216967--b8e15ea081b881711f8a6603cc2864332af820cf9c78120eb277269ae64c5437.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 63f3c2badd..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40352--213b2e39db00197d1cf1ea5ec62fbde6040a73ecf8da27186b98273f9755e992.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..78e44ef898 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40331--472f6d3294e7074e0eca127789793222527b1e369d43dcf9c39c4bc5d1617440.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index cbef546b9a..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38352--149be4ebd20972f7b87590dc58b47d815c655e2d85268187ebe44e5eb40ab79a.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ea88c828d0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365666--a4ae83c74b8e3a99d099111594499e7b7acf5258ae1743f851396735d465aa97.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f6c4000c86 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87337--0ca1a3eca71186216b57618c9ab8f61d93aab96fadbdb8bb5553fddfb58fac0b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b4fd43f7d --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5de3ce9c56 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/anat/sub-cmrra02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s216943--4e8618b03a6092b8c6bf2c3005c8df00388c9b8c9f5eea14a1674448e27d96dd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra01/anat/sub-cmrra01_T2w_softseg.json rename to derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0a4751474 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11360--5c3beb537f45e004c402bd3ef7d2e138333961cca9880214057700a44cef7318.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 97e84c0192..0000000000 --- a/derivatives/labels_softseg/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11399--c5c2512ce7a141d9ac3d7bca5d1bef931df133981214519a3974aebf6a07ce6e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.nii.gz deleted file mode 100644 index 805cde48e5..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s347070--286147228387d16ae97403ce3566a4e7590de4795e88a0224166f77385c6824d.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.nii.gz deleted file mode 100644 index 6ba6eb19fd..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83797--676cff78796ecfa9e897d9d63b816fc8b06d496eb1dfe9ede04adf78e521946e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.nii.gz deleted file mode 100644 index 01a1dec793..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209582--ec7576d3646ae40ef390061e4cef66939713d7c94ada752ed68e9fd6a49c4441.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index fae719c262..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38830--a4e51b15c4f610329fa01698bdfd7890d9ae3c10f70355dada1909037b312ddb.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..468f0927e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38793--86beae6a6cff2753ebcd1618e6b006b518645eb746eb8ff01964703d66caa80c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 12f968e7bd..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37743--0ddfe9cbae505b655c190e6965d42067ebb5858dbbc067493c79ad3fc414c465.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc424ae35e --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37685--a19f605d8a0f67c8ec2670756480a1f8cbdda8041a62a654e53c448b8dc9665c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..fd5f1cfe1b --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66c793aa7f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s347042--8bc19adf6ee9ef93698f09ee2ccbf3a0c0357ec0f7c5d7e80a3ac84572f39779.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9e05e31847 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83769--b6098e304738fcd4c6a138b3d6b9e760900ded709ff054aa9fa2b182d879ae98.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b4fd43f7d --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..34afa43475 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209558--38a6eecb5ac039c939ca15a80115787f8b3918649b0a93cdc68e4524a0b8b028.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae9f2f4b4d --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10142--f11526d30a29063f39c383ff2105fb537c6ba3ee6d6310e0bc26a6061a776bc2.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d0a3004c6d..0000000000 --- a/derivatives/labels_softseg/sub-cmrra03/dwi/sub-cmrra03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10180--abfb95c0fc161e6d2496119f7cf6ed9e665fe034b797f2ba464347d5afa5d793.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.nii.gz deleted file mode 100644 index 3b44fbdc08..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361042--10a8c4813c3658b78fd4d9ea41f175329ea2ea86d2376f10513dcfec27dc8246.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.nii.gz deleted file mode 100644 index 9d949e527a..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81553--e6fc0942e410a2ff31d3aeeb4f5ec4ec96765f7037c185fc771d73d25878eeb9.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2w_softseg.nii.gz deleted file mode 100644 index e076560507..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206647--f6ca0233e4681ed5f512269428f116fc92dbb9a724d5df7c81004b6d70c6281e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index e4cbed1a19..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37552--ce9b3f29a5b94f9980b8d1a56d0a6729c39b1e641d84c23b5c5fd1d3d108cee7.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0c824cb197 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37470--cde7878cc5e94f16b6158aa35ad43c9e6665e17242909c73ed5038cd3d223a55.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 908d970611..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:12" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 99ecd0ea01..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36643--e1d601dce478ea2ec25df78e89cb3d489e283bda895ef8a24c3fe2a466d818c1.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..18741a9b19 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36563--d004881d053b9a69b9657dc4bc70dad3ef8059216299150cd103d02e2ca74aaa.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..fd5f1cfe1b --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..81851f4e87 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361015--ac13f9185b0dd2294f7b3464a97ec823df7d90a9fcb096ee835fc5490890e020.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f44c77ec9b --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81524--22d3bab7be512b88aa7b10f2ab36670890cd5a21d3c69e553fd4f55dbf66ee18.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db7c3a49f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206621--3a5d38fbe86098cf3e3ddf24fab5666839f391b37a00b01b1e57af5ab03081e4.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra04/anat/sub-cmrra04_T2w_softseg.json rename to derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27f0d74bb9 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9600--f50c4b0ac03013e891ce7129ffa180958a8fe54af4a72eb55e91f695e99bbbbe.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1f27f2f52a..0000000000 --- a/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9637--e9a92c10f998908b90c1b055b603a00715b8728a33663600aa04aea66bfce716.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T1w_softseg.nii.gz deleted file mode 100644 index cd9b59638f..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362580--64c059578e18ef3057075a726510ceb68abb19c2ec776b5548d37328832a1e65.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2star_softseg.nii.gz deleted file mode 100644 index ecf7c71408..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84163--443148c46b12d63dd8190f0812d4714ca377258452897cbd890fc666a110af00.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2w_softseg.nii.gz deleted file mode 100644 index 1e67b909a0..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s210539--b4aeda02e7f6ebb4c02cb089199aa6f1d72d194a9166077f3384076a9a9ae196.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 874854bb05..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38714--a0f9034a700d2bd72ef802023324402829f05b28ad2b37e71f2a1949023f4d21.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..44ea87c5b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38746--343af8fa664e86f21a56f32507c6ac39186984082c9792df11fc061276943d56.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 5dc41c3d22..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37003--1d003f781cde6b996bbe89c77559e32b26ef3d03a005e7e97815046737be47fb.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..53dabb83e0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s362558--9b697479c346da4f2a329dd54e51a8f85c2a6ffa09f0ca7c8ebba61e76e5d59b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..5f5b22f2e4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7b98d2ae3 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84135--2cd216fea1538fc812a8a2a2090ca67fe5c8c7ef155d9c92f534e36961339141.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bff2bec6d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s210512--679e29057da8eab48123960d9dbb6a187076eee58abe3ac71707cfd32fa3e053.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a9ecded956 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10329--a6bc13d5bc3cb23520eb51fc04ca72909cc0dc52f29c7151393e8603e7e9ff73.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b786a603ef..0000000000 --- a/derivatives/labels_softseg/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10367--4a5d453643536591d6253f47d01fcd7867c620408bb5cd697298b0a167bfed6d.nii.gz diff --git 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b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_T2w_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_T2w_softseg.nii.gz deleted file mode 100644 index 98860b98e0..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184053--1a8d970c4582955393b93ff7b1a68ac4d5f9e51a25c36e258acf688fe86296f3.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 18e0fde61c..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36820--f082d809d4fdf21230103de2deba622208350dfeeb24c0ed6c617250d48bc36e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..055e04dc68 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36831--82884fc5be61f593722f3721f97ab15c43f24c3d3bf5c146c1618903336399a6.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a68154cf6c..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36040--a7d35559e8b418045a62e81eda0ed91804d09e1b15f15ba7ae42b979e490c112.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0da04b9b9 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36003--386eba81e9565623ef85eddefaf374ca38f277da5805e3c447b956f21a8588b6.nii.gz diff --git 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b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79500--57c453057ef992a77126c618a220f3213bbac177c781f6eb06a622c79ad7f696.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3b83bd77a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/anat/sub-cmrra06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184026--bf5392bc8c1dd10d40be886cea0db079ba27c08dfed638787d82d9c08c5d9f58.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T1w_softseg.json rename to derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0a36630443 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9194--22a0cab6e7c68b59e9f73c9e23395b8a1f1f8450f49f0382d0834e925853fbcd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 0f494203b8..0000000000 --- a/derivatives/labels_softseg/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9232--feb47cc77d4e450acd2118aeeec36e31f9a71909ac76e2b6fc6f0d59866108a5.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.nii.gz deleted file mode 100644 index 6e50033dd9..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s350770--2fc9ea7651be3f36fd988f8c06d6c98fdac5a06954848022d35fb3a25743aada.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.nii.gz deleted file mode 100644 index 41abbb3ba0..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81339--ee0e49306f9f640824e987e47c614fa33d3abf1b7b10aecef42bd8c8578fc74f.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.nii.gz deleted file mode 100644 index 1be4ee249d..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s198130--0955828431dfcf3b15d25f3213effda5e499b23a9b6375b39c92fc63b8764754.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 87deb42bdf..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37682--4bee7b0f5e9db70de7345659682b106b56dc34322e233ec492a172f250a15838.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aed141ec2a --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37632--8e7d77060146efe7887ba04b4f06fab178f019ae0432cfe0ed478b37fbf884cd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 230252a921..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36609--d2d8638a8a4b636c3af41188ffb7638dd4cae6397a74cf67885a392a7fab36bb.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81310--ec51a9a232a0536a2edd449f70abc55583946b6195bcc3e946f679e576863748.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ca7fb5910b --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s198103--f5224592c75c8af5e037b5392df2a1790693a6c81aeef92c05c94f25efeaddb7.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2star_softseg.json rename to derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1add29ddd9 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9614--9c3779d2e24c729d16f8ae5da2bf4f40f3519240a109de40f432b8f1fbe6ba62.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e8c950f06b..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb01/dwi/sub-cmrrb01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9652--fbe84231fe10ddadbbea093362436b39dc14e7af51eae1a2df7943bd93528c9b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.nii.gz deleted file mode 100644 index 65a259f8d1..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363328--c29a360de20422effb2aec0bb6f80c1824437c58b987825adca9908dccaabe62.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.nii.gz deleted file mode 100644 index d9a225ae5e..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83934--139b493a845d75c04b155b484a2cf22b736824fc3eb2903e93b3709aa583851e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.nii.gz deleted file mode 100644 index 556e93a89e..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211709--75347068655b385c69478273ebcb88786e8bea7836fc6d0a9016cc17259596d5.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 18b2831eba..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38926--de436c21f63e3d92a67d4de5e1bb315900262ad59b015a4bce7b736511accb0f.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..92e4f5a8ff --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38926--3426e9644ed076e5abf8230f2e6afc0b8daf7cdfdfe2af778654944c73c025e1.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 09f0b1cc59..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38088--76c949fb3e6cd645afcc954072794bdf4d690e594c0a2ebc4f282093d86e6579.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1f875c969d --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38043--3a88ad86f52e8fab6ac239da4500f48fa1a5e6b49edb1ca0e6c49a11f376aa9f.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6de4af4e61 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb3c251fdd --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363303--6ee5da2db5acdc46c043363fe376d55e754cdbed718c7d2e6bb28694df0d2f8f.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..5f5b22f2e4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0b314129b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83907--1faea7fce1d2cc204c31888ce081f4b9b52add1e5259d73a8aae848539258ee6.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fe2d1921ac --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211682--2bf7f19203a1fd27b18895dd0aa6f72e560627ff90b7f7c58d126712c006d00b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrra05/anat/sub-cmrra05_T2w_softseg.json rename to derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fab7018707 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10444--f1b9c9bb434203da27ef943115223d913b382a2410808bfb0d115e42f0ed59e6.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b03bb9a5e6..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10482--137f3fc114c1616f4067e308c820cca932ab69b331b8aee6857939ef2ae16950.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T1w_softseg.nii.gz deleted file mode 100644 index 6c1268a026..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359031--f725e9220020cc8d527b4d52e199ecb3a25b204e5ac46f51294f4c0f336bcc3f.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2star_softseg.nii.gz deleted file mode 100644 index a8fd5f0a64..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83367--531e53f67a69e5c266db332ed2cdc3d5953bfd5e3f50ae63ae9ee50b91aa0171.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2w_softseg.nii.gz deleted file mode 100644 index c548b95bb0..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s205332--a71184ed9d3e1dda1723498a89e65abe73c09ad9b3c1f58665ff9f2f012db0f0.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:13" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c8a6846e48..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38293--7fb97b621da08aa0e937ed3c2f37df479d436757f9ce97cf34ddda7f9aee044e.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6944a4d761 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38242--cc8e03b2c2d22ca7a0214a7386a9772b23a10a17a11b0ddfbcdc8e19287f51fc.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 97c8d1f4b5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": 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"2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3bea955d36 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36972--c4d08f502a57f3b0ab27e7fa4b7151c9a13a06500153301955e235e80acfb4d3.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5728fa1a2a --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359003--6705a7bdb782100f38fa4a1ade264aac9c656953d1acf290c34d98fa56231396.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ca75e9dbca --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83340--b21227b84bad26a85ba976e34858e5753fe890579d56bc84eefa5d7e1ddf98ea.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..a527f4caa7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..925e9d17c2 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s205305--2a5fd8f832e6aa61719cba69f2e9e00b5465a389ec52903d47b28616d32cb646.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T1w_softseg.json rename to derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..67fd5fa9ec --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10061--1dc193f9c3265e298b8c171be726db55ab60922748729ca6e0710eb33494dcf7.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce11d0e969..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10099--a0568fc000dc2d532eb4559ba46e1aa494272b93164d1d4dbf5d4b5c2883e40c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T1w_softseg.nii.gz deleted file mode 100644 index 1678db7d7d..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365895--447bb7db88773048112263be4817ece9a85ab302eceb2b19584fea2a909e4ae7.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2star_softseg.nii.gz deleted file mode 100644 index 576e6a1b3d..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86849--530f88ea98e40c0c4da793db933e60466ff4879b43f32558ef10e9b273792763.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2w_softseg.nii.gz deleted file mode 100644 index d9f706a70f..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213973--87852766c867d6f9ccca9ea50f5e6de95e76505bf54e6c72345ae90b2e2897fd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5b5b41aec4..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39133--fbe28cb69834c5feec009133523178ffdcbb4091fbcbc17ac31a09a7d27ccca0.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db4780a7e0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39093--47d520f1bc2898b429c9d582c88b22b8616081c3aeeac39722ef6a5f4a2328a7.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b1b56af6a3..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37982--934b43e04e7bb2922f7cc944010e95d23b5013147e4198f5ae5ecde029b30732.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3e6feb54a0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37940--b3cd11af6c3806107635f1eebb836529dee22330f35103216ba8b9a767c6ba67.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1b64d1ab2f --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365863--290af53da364db68ccd84607d1a742edee5ec5b2a86d8050a1ff2ae3aecf41d2.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1b57657fd6 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86820--0181c8dc4e25356e81558f56605a7b6a68d2868998dd7a781ebd6358994e0ef1.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..a527f4caa7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..95fb8ec965 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213947--94c1601542671e57e2354de8ce67b7288059c782aa18b4045b93bc79d10461b8.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2star_softseg.json rename to derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..82afe85d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10897--b34b206926cbbdd9fe0d0740aa3923047a948bea9cb799aeec8c2d7b45734383.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a14771b226..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb04/dwi/sub-cmrrb04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10935--8b006c4c24f44c0a7f7e3916bf0bea2ca52cde216907ea6e70c892d121e27724.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.nii.gz deleted file mode 100644 index 8f32480c43..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363997--32cc56bcdae120e4e6fd41f0658551096aa61ac2e42b8f1efcf2674890d1677c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.nii.gz deleted file mode 100644 index 157aa11b10..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83703--f1b7aa939c279a2da02bd6210c493b7d902cd3dbe08d6253b22648a67648171a.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.nii.gz deleted file mode 100644 index 9df6fa793d..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s189316--c419c87822e6043caa28e66333f6fe1a5f9bfa7f103bbe9622ade80357d18712.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9cfb59f186..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37985--54028bd34bbd1461f2b54bb7448f308306a2bfa85d3e7cf838456ec64487445b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a56aeb576 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37953--756c915f516ef76a78fdfea95213382122cea6e48a5f2aaa6aea69048d817994.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 390ba6c01d..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36536--573d82949bd1f50a76129ebddc381cb57b15d10e46c1f22a2345ccb9085ce46c.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..63e47c1895 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36508--bc7b0c2f0440b94c2145847f8e1bbb67ac348df3ede34716adfe2bba83c43aaf.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d0665f8c32 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363970--c0781fb440cfcfd630f9a1235fd75f4aa994e6fb584b77a4a5f0b336ba04a994.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d6dae2aa7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83679--b4483813cf97ab2f82c1af423f00c5c6b8cec3b5f977b7ea7390d53d503180dd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..a527f4caa7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0bd8170f22 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s189291--70277648cf85c9987309eedfb9a768d4d06255e6c1a728d08ec92cf4d33ac92d.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb03/anat/sub-cmrrb03_T2w_softseg.json rename to derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2b3bbec14c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10197--0a02477242f07d9dbee44230946fce4f30672df0fe6f0ab76fdb709fa1f555ba.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f0c83418e5..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10235--0d3e5e8f44d05c042e11f81f3e07e405f9e77b1dcdaebf9118ba3b4f4379d6c9.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.nii.gz deleted file mode 100644 index 27c359545a..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368485--fe8bbfa73f8f7311e0352c3f8e0992c636c945f8e3096fa57343f49c51f8ca47.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.nii.gz deleted file mode 100644 index 884f7c14d9..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85310--559778499d29ab0e7e6e3890ca79291778047a3e9fa84568ec822c17c597f279.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.nii.gz deleted file mode 100644 index 4b8f3d2c53..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s217168--97db59a114d85c4877bcfdb5821d1c077907422efba3e1667083f84bd9504bc0.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3630f28ed7..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40208--b6420a9d8ac37b11a928aa83cabdf0dcb9687a56aa5b4aa98003367263bc185a.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6bda6282c9..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38294--2b63dca28e6038f3cc541a968807c6b3a9015cadae1897d59c8da5510c3ced29.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..24bb4c66a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38253--d7d8a37fcbd56c9d2d73bd1ee7042a2f1209ce3814e8908d68bb380853d1a257.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc280f1ca4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368458--f0e530ef28fe71725bb15fbd95a2357f0dd52397d4ed9628619e8a9558ea4700.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e94ed322e4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85282--c0b0148bbcccb3a3f17cb5fd5875438eacb320007f63a20e6c5744ce4eafcfdc.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..a527f4caa7 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..64bfceaea4 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s217141--92623d5e81b7572fbfc8b14065f03127959518cc079f616c1f3877060c028d59.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c031213433 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10591--3a203907d1f4883d61a1a89f059a8a3f5686f8d34537fac05ad56c5602a68291.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 08810c54f8..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10629--99bc0397b36e8e6ce6eeb5f74c6d33e346be28d8ad1ce1caa1b60c0a7b273458.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T1w_softseg.nii.gz deleted file mode 100644 index 8878b2561e..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T1w_softseg.nii.gz +++ /dev/null @@ -1 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a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4cf888965f..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39284--13fb2eacc78a937e178ea5628d06db0fed1c90dbdb88041d20b48e0c6d881fb2.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1c1276db5c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39229--47a3b4e83206a5b8f7316f0225ef2e282d317bf681145b2388d0c0ac3b9571cd.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6676a57b56..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:14" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 5926e240b3..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38675--127710cadddff944437665fb21236e2d36bad13759dc8886165ca0c3634adc37.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..52c1aed675 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38611--ed5796549b208670f952b6b6ad29c6adda235f77742074434eb2c24522595c0d.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3f2993aa57 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365862--96ae01d855e8c74c9cf8a854280273b0d2e66382a1c5af844ab0f76cd348e657.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..75a2fb24d0 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84569--751c18370342b8f03206a1c0ae7abb23f6567b918638c1afe92c4c577f276c2a.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..11c6de13b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f5e870d916 --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213965--314ebe685b51eeb368509e6ec5ec0678efc51d274f343a78ede3848f665db83b.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T1w_softseg.json b/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T1w_softseg.json rename to derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..109909935c --- /dev/null +++ b/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10231--d9e202bf22e1c3311ddec9ce0337c7dd2fb253a477213344d1d2821298293ab3.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 18dea47e50..0000000000 --- a/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10269--6007ab51fa15f9623408b07a045e46dca8e3a482122ef2de08088ae2077fbeac.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T1w_softseg.nii.gz deleted file mode 100644 index 2ff856c1f2..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366213--7c760ebf762e3d3b5344ed62257c00ce9a0df911c88a4a210f22ea457a0ef9d8.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2star_softseg.nii.gz deleted file mode 100644 index af99b4ec37..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83228--90c17f129348d98d68c09cfaa78b9ad5ecb758528f37d574722cc14f84966304.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2w_softseg.nii.gz deleted file mode 100644 index 102d66a1e8..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216001--3a4c2738d0ebff95592263861647ec7746712b09ac23b5563036f1abdbf26e50.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 95f2fa0490..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38917--76e761a2d34d01fffe3bf2e2d60cc3ec449180aa30a31b30019b6fc13bedbee1.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1fbf16a482 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38887--44322fd24103d7daa6509170061c7daafce0f7d83f956161516d819cd23b0e75.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4742f3552e..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38112--c8c6686852ee0a10e97c6e9c26dbf78cc1dc42a99ce853beeed8a8a32336dadf.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3fafb3729e --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38068--dbdf126bca594af71c05084029469b36b4c667e9d0a05894ef35fd964dc2ef49.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..96b3ae45a5 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366187--95e28cc7b339b6e3e1387597664d03ee6da6586433ca6051d88882c01fe7a5f8.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5ab1fb57d5 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83199--761db45a48820e8f40e9615a22107751f5639acf1a0a31f0796a382445d16eed.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..11c6de13b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a88c19dace --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215969--68edc202035bae7dc108d99027201581bb70bf58994cb9d494aa318f401bb459.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T2star_softseg.json b/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T2star_softseg.json rename to derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..80f7f91247 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9957--253057e306fe5baa389af924aa1e200529f38ce52f82ea4f62c6c5e7e737a587.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a1e225a9c9..0000000000 --- a/derivatives/labels_softseg/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9997--b219c6d537eca033ec7eed0b579b4e22073c5899dba5b86a2f3e1601a90961ff.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.nii.gz deleted file mode 100644 index cbe49aa501..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364049--6a364c21e48b28e5e465be601af322eb9ae70223adc4d9a877d59db697677b97.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.nii.gz deleted file mode 100644 index bc8ce63b98..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81696--9b50456c1ab6fdcc1c0b1a64b45f1ca4f9db9419b3f9d599fc09f224942213b5.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.nii.gz deleted file mode 100644 index 46bff85ded..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s214925--fda52e73942c00e602466105de7ec6a0bd8af15366e4745dc7d7492ab784d860.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9a7e82bd11..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37784--8ebc36bd1679e5dbe33c8b40a7de946721333f7b951a8cb51e3833d2465fd3dd.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aa4631162d --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37765--1b1e6960bab2efd712c79ddf0cc683e79f4194dc3096720f28daaa935f850808.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7a68c15e6f..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36998--23cd0197005b607e33f6ab97e2ed454821261259c535d831eddddaf77e6f1951.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0332ac2a24 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36990--86c912348b156262ff0ca1474d0c90dc5b52ea20f9b731f52d12ce02bceaf0ab.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..64b43c7139 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364022--8d25f1d5ffcbd6ab3bb60277bd5f52b584ce7aa2383213a5312cb20336daa8b8.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a094f92a8 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81662--2fe1815e033b9f5bf29d0a0524a64a71cdc4a8df5a15904f17f4cc83d105e3fc.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..11c6de13b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..355729526d --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/anat/sub-dresden02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s214897--3538ed9664c8cd3512ca275b801787a1b3df0a44c7f77721a77143929f1c5a02.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T2w_softseg.json b/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb07/anat/sub-cmrrb07_T2w_softseg.json rename to derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d32f48cd10 --- /dev/null +++ b/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9602--6c5f557849caf60d044a5d3833a50f5a42ec74b2908e32c88560ed7a6a52a9eb.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index baea8ed7c8..0000000000 --- a/derivatives/labels_softseg/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9642--f3dfd0de7b3507d8419a11f051985c29342d003725f96147f4c28abd70641df3.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.nii.gz deleted file mode 100644 index d6a405a7e5..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s418010--bbc6219d83da580a4c97d511f6917b7833ceb91f7ed4cd2d16bae6d223f1b79f.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.nii.gz deleted file mode 100644 index c6f4c7bc3a..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57038--d885ce6257122abca3b6654d4face46a0b7b74a73ca882953903b0137c9036b5.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.nii.gz deleted file mode 100644 index 34f9ab05e8..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s205471--0f144f96e8687908fba825855e9a48b7501d2fdfdc902ef1370bc1b4586e6905.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 7c0ef6eff2..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39473--d5467f79dddc587a4951fad7806dc64829c69f956fd6e7f56b6dfda63df97b3c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..22639d8624 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39432--0a7c1bd19d300380286f077d8c6cf617934920bee7805b8b7f7cfe74aded4f45.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index fd518a8187..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35769--5a0f228b02452fb466fe10bab7e60bcc52bd6e71e095c6022af14ed42b1b6159.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..625974b914 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35738--f2975e0c80fdf9bde60d49be9d0f7791ff1ee628ea584090708caa6d37cb7960.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..96661ca3e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s417977--bc91fa267820a1d1ef5d6c015f1708e4d60bbdcdf051c386796288a267676632.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d68160d994 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57004--dded3e901197c6435e4a3865a6025aba35e0ebea4b3e51a83c7738578041f011.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..11c6de13b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..647d32a6e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s205440--3b5f4d9498c1a79aa2f18363e7c5901fd7b745db4bdd8fd43abc8e461bbe1e23.nii.gz diff --git a/derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cdd200451e --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10353--45bffc106fc1610af486b4a87db447dd0546a9e5e7a58a10ee7397d848b239a7.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4a45a6f5cd..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva01/dwi/sub-fslAchieva01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10396--3b575f21cfdb08364a757075d1c2a7b03b4df8b6a7d5a368850433f7c65b54ea.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_softseg.nii.gz deleted file mode 100644 index 384c2e8af6..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s425888--d3df88fc422736243546428e72ee784600b70bdb75fefd4d7d2517fbf2dd302d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_softseg.nii.gz deleted file mode 100644 index 5a509927e9..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58663--b637bd53dace979e4825b73deca937bddffcb1b342c253f1fcf99ab48e8c4252.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_softseg.nii.gz deleted file mode 100644 index d8cf47355a..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s205795--8e07176b41f42a28ba90ee3ab09456e8218b629989b81562daa7004484b5b85d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 666cf0065a..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39196--f059eb8e1fd5ce52299253e0f4bd08f3e02cec19f03cbf5c6021e1ad03065777.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bc713b14ca --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39156--c705a4491606d3fb1b14c63dcfa64cd055330577be8775c1204cb48a949d8c35.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a5005f8c01..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:15" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index df2885bd5f..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39384--7174ed6276bcb5355483cf5b0e9189febcd6bae99a860527319c0d65e6a82b4b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8548b23a39 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39380--c3d36c4848d15bc8e49e6690a62c1f52837201e7726892270c3153cf556ee35f.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a9135cad30 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s425856--cf52cc3334d7ce4051b60988745c95ff3c05ee0c8e487eb1aaa1e3f1834b7b0b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db183a8c72 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58630--bad525ca45f18ea29df580234901074ade7d2b89761e37708bdad0434ddcdd9b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8c2a7d9927 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s205764--df2ac8fe4d1b7acb538ae07ffcb89c7ac3bd1d85905036833cf9c271dc657801.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T1w_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..930b2aa598 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10982--093c70aa3b9766acfc901652b79e6e6f1a2b07232d1a69c6233b90d793e56160.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a8044f0373..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11025--7456a5a839476d82c6c8c0a2bfd1f0a1a6e97072dd66e206610a3587f399493b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_softseg.nii.gz deleted file mode 100644 index 7bc06a0402..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s416943--09458d4306a91a766ea3561b567d3fe121f6e20b12944631fd10f7980b5392d6.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_softseg.nii.gz deleted file mode 100644 index e78a727911..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s56104--2befa2a443d9f6569e44687c77b5d5ad26e0474b62f39c1f641d0f710d37c088.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_softseg.nii.gz deleted file mode 100644 index 4364a09f76..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s177430--7a9a2a2c46aa26d451ba1e901b469561cf7ab68eb9e672575314e33415397684.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 26b4456502..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37995--a3ae67c81b01106af9b47e7e7f590193d8444d2f6ec4251039413487d8177343.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4f774ae2d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37955--9049dacdde22124d99c3a2c0de17e0f058fcb701b7eb34b4cabb3b5a8ed00018.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b822e6d897..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36151--33a8efdc8a7de3057a0242a81601528a656fb405bd88dd1ebaf36e962217773f.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7d457abb93 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36080--05ae32346a3f35c00c39c0c2f39bf701d4c81c5c0e4561a2bbdb5d155c843e79.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..774bf573c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s416911--f817b72dea7c687ceaf3bfa34b267e721b815804c604c603983ad6287d020175.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0c3a04318 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s56070--1375801835bc159fc3d6cf87a4e4267960f106982b6167c67e68ef75ec53e16b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e5bf9bd965 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s177402--4827c830a33e9567f3c57c7e600042d027e9bcf64a5a3908bbb4b5b24ad4d0a5.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2star_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..520e3988df --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10150--a1e2db93d7ed1a3e268393b23ca8bb8ca81a1e0f30ef96cfa2b5ece971150ee8.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1a8b954c3f..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10193--7959460cb2745d05c71da2ba6cb21ba563d99ae5935ac8307075511669917a20.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.nii.gz deleted file mode 100644 index 6636b46eac..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s432453--48ece089b79d96c77cd1844d96856b87b390aa8a79129d3319e05b569c10b2db.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.nii.gz deleted file mode 100644 index 1afaa28bab..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s61706--e5288b4fff54eda558b00409f3243dc83ec1021a5242d7d2d8f68a017521cc5e.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.nii.gz deleted file mode 100644 index 6480249825..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216029--715889bf3bde9a4d4e32221c4009c8ecfb17df348ef8cbab495077a269bc36d6.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8db1eb4b42..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40985--90b746d5a50a3c6dff4d893dc2f9aaa42675bceef060955dd13ee978b6426f39.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..65db2d63aa --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40945--46dca4181e201a6588f2c7d0692160aef2a4f222a4a171e9d4cc9027e9538a98.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 25d3c636f3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36630--c34cf7c938659f2c0cdb88819fe5eb0f643dc6d431d9bca644f82eae4b9d392d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e9cdcddd51 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36610--cea4fca55c631f5f4a7fdbaede36392581b338e121cac0014255f249b6d98748.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0a933b9f7a --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s432421--3f4d91e6c62a3a25ad30af026035dfde3dd2bb0c4bd903b87bec9beb7625dbbf.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc22f0c7e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s61672--ee12d45e103475d65866c941dcd0c3a04f9fda976d59f857000849c7571bd312.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7a87009dc --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215996--0514ee6d9c6e414f7a3bab0504d09d6d8b5b7ebd7e9e6f1397b229e700a5d99a.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva02/anat/sub-fslAchieva02_T2w_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0acdd6447f --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11831--10f2d7c0161273cfca1e4bfbf26fa1e366ba471ae416a5dfd0eaba4e14e61024.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1f917ccded..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11874--7fac6e8478d563b77f9fba1557165e4dcf0e89734ac7991effac09ce66e0ae6c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.nii.gz deleted file mode 100644 index 647c6ce3fc..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s408383--2874831dfadbcab604128cbd506a862f70b4cfbf86ec75a626a1938997bc1499.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.nii.gz deleted file mode 100644 index 4937c20c2e..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s59703--4fb85e7b8c713af793a9ead0787592caee9f0ed94fb2612b7e7fc932f6e05903.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.nii.gz deleted file mode 100644 index e033d15659..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s178966--2660a179c96fdf43981a47a270319f951f3553f1ad963d13230ebc8fa192e56d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index d1ad497116..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40392--f6929d394360cd32ed7c57791390154a125dd0fa267bfc377e500b592b2ef3a3.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..99f42f311f --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40352--64ef1760524de0f9114e5f49c1c6d92d4f32926545ee56631e3372406653375d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4773086642..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37503--9df9499ce95da0576cd6c840e60018a5f13e16908b79415ab55ecbafa1b57361.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3336e7d9d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37411--eacc8ab9528b378e570148963b00fe81469b8651a6a0c4a92500bf2db3dfa4ca.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7098563aa8 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s408352--1478e918ce3ec785b8efd8884d13f104b1ac28f9217b1fb3867657dc2e5aaecb.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..31571a6247 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59670--a1742b959cc07ed26c98e29f8372f7b1fceba8748514a4f8d0bd14e641ceb6fc.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5afedc13d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s178935--f527c6d9563073ea69a90fb7b91e6c5f5b7811402ff33475e13ac5e72d732fab.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66e35fdfe7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11140--b5f86efbc1e0209a8b81c70ca18ea05fcadb6310fd04010071a69d15108a130b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce58f7bd17..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11184--01f15614060ea6b6638cd2fc0a52218fc798b133a1b3111ef4ace1d5d800cc36.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.nii.gz deleted file mode 100644 index 0984897f6b..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s427404--dbe7c796d122ab2b168acb4f60e6d0d08a00df4648d04858e136483cb8d252ef.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_softseg.nii.gz deleted file mode 100644 index e7ed82fed8..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55390--2c2581760e295151616fb22ad69c6c6ed53f3902d2adc13762dc695ee4ac0605.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_softseg.nii.gz deleted file mode 100644 index 4632c2a32a..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184292--d511861253ba0a70e0a48e435d04333a2b8ce3225589d4d20001a75454f5d5f5.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1cb30dcd67..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39191--1ac3ea65a9a568fc90ab5d096eba452d50e9bac04c02e51801ef26b54c85630f.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1aabc78317 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39150--77339784b2f22c74531785e61ea16f4a03eabaa10952b43180361bccb17e2000.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0ca96228a3..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:16" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 217d4ed9a8..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s33082--d3cc6a141a46b95e4793b793698738e27fdcd0925454d54590a45406c77ff53d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..afd31acddf --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33051--31d47771c7f05b6d4f7a9f08f3023d918948729c3a02c3d1d88dd7b7ecf2aa70.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a0d89c74b --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s427370--2a54766916188160afc9f0e948ccc5c8a1b662b902d95360e5273d690510fdb2.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4172daedc7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55357--dea99c54f38ebb57f053216ce1e30fa6449ba0a15986f0ce1f68de0c2f212900.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..97cda2fa98 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184262--02ea025596211402b973812da57321b5b0dca9d403f639de726678acdf1f4904.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_softseg.json b/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2star_softseg.json rename to derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..898175b4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10320--cc757c3578b9bb6359a75112801804d1a12940123c24c960d77f5318049440dc.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index baf1bd1393..0000000000 --- a/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10363--b8c64cdb404d70b91a4364bc2f3c930632886e8d078d7eb7469220ef444c142b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_softseg.nii.gz deleted file mode 100644 index c97109731f..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361897--532d1fd3c13b7134de745d5d5f8d91ea49562b11dde53247446086903f748960.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_softseg.nii.gz deleted file mode 100644 index 0e4a107694..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84413--bbb2c9b5593bc94e69b3438e41b2483fbdc551e6acdc8114be6b36d35f8ef5f8.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_softseg.nii.gz deleted file mode 100644 index 2f03dcab44..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s191379--603491fbda5a547bc0993332350646ebc384a5c26b685284deee9fa04d69d7c1.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 45fb387d9e..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39263--7ae1782479da00f7fc3f4e307ba3464fc8f2167d7d9ac65b25bd16c1541253a9.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e5168f759d --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39281--d3dd5228985f451e3bed0903ea24f7b7f8bbf9f168b16c27d698e7756c11fcd0.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ed5b796c48..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38206--30c8b3ba28bc0ac58bb0b2fccb6afc54c096dbdb8fe92c441efec9fbc3cd7210.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..75ecc79732 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38162--6951927ef7075f4330c1dbc3d812c34c5d8f8ec032c20f12287417a2c6e969d0.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d1505b1102 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361868--6b3a46cf7dcd0bbe17d15a1c2a0922506f4bdd3abdd263ea2391cad669ec6542.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e68d714d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84365--793e3bbde8853fc5cb314925e621c7364f2f20ddc7639656bd88f1b893edbe06.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..54b440da60 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s191349--e6dda95827c8f3d992f6032015d818ed34dc7e9fa3533ac122369fe5904f4a65.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva06/anat/sub-fslAchieva06_T2w_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..56a37a182c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10216--8439644488ce3e969b7775ab2b42e590580c3e15ccd9314a986a5042626bb19d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c707c7f79b..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10257--2c18254fb8894f382026d7b148be11c91e158224e7d9f994f4294efd82cfc6ef.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.nii.gz deleted file mode 100644 index d27811e29f..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s367668--135256e36f43614ca2bea1b807e968be67e14df9e981808e506e45a93c1efed6.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.nii.gz deleted file mode 100644 index 04a8473b8b..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s88676--04e063e5b99b920ad0472891723c85006c2a389716754ab3cc381c1a0e872c0e.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.nii.gz deleted file mode 100644 index 7fdd6c2195..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220720--b3f9a602beafcdabac8af9241e93528efb283024745cdf646cffbe4069042786.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index cd370d62d3..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s41392--7ea64a306fd7977602ca2e8c8f0fb3a14ac2914d783bc124356c4b1c67ca99be.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d3a380e821 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s41409--d2f5192aa7142c7bd0f47133bef842cdeba4239365c99f2c16468b39e659b97e.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index debbf18ada..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39273--ad6c69f1704659e9dd215505cdc709c759439c63f4c6b1b44c5805f7a8ca1dda.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3eccb3be92 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39186--1bbff8159f257b30e82534d7023727af4198c2c4c715140f8ae92ca096615e9c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4e23118276 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s367642--6d22510e0dcdaccc44d0f6b2144c6e1849a6af7ab8dfa9c79838ce97254415d9.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f29da6a93c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88643--8359c268ee945d01f7c2e1f378b0b05b9d6758623e65eefe77eb7fc7e8bf2648.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0c345cafea --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220688--da989ff41e4bfdcb71df71ac19517d7a4b1fc92931f573cc523dd7c3f90b3d6f.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5548080630 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11409--9c25ccd41d3e22df9846d33ee25eb443c6669a26090a988c74ea71e81f1e35c3.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 185c9c855f..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11451--401fa66df2f4fc1fb58c38ac13ed5914e968a33a8cca510f2d713d19c40bebde.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.nii.gz deleted file mode 100644 index 86baa45363..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368503--c2dc31d69adf725288b3a8c5588e04e6da325cbd7818c228fbf0e5a021f4cb1c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.nii.gz deleted file mode 100644 index a3385e206e..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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--- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39751--816be7accb73f00033a01b5950cb8f33bfca73aca5232bee16ffe8760ca51d16.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 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of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..77e6fa780c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368471--d14776a56e3ae362d7ad01f864006490ec3ffb74123c7109fa33eebd1460d543.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ee9a45e423 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85840--f1ae79de2e07e95029f20907ad55d1579ea5d493db326c6f911c1ca2c8aa9944.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6a1ad9905e --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s217385--789ab77343c138409a0efb8f9b0816772248433d4ce65f72bf66a28905d751b1.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T1w_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0230392ebb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10914--87505042899031beba97f248224ab91b97da6b756fc2da6f9e4c3cc1d845e0dd.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 34c2bf71a4..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10956--bae9cc49da49f2fa8a09ad609389a8899ea9e530b4b1bcc2295e3f020c61a0b7.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.nii.gz deleted file mode 100644 index fdefe9cf2e..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363436--b414e2fc774069f917a7384f205f1ff048caee81af3d7e63ac90c86e6ba9e883.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_softseg.nii.gz deleted file mode 100644 index 2190365ed8..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84644--e30bc9fa30eac5d16b91a71a4dde7671dd304f0735a55b984507cb91439792ec.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_softseg.nii.gz deleted file mode 100644 index 3114f17810..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s187416--230e5fb5ee5ea664a6ade90cd87646eb12d9c1d7d083da9299694947c7f83c6d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 03709edece..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39481--31544b5d1debc5ab6ac2fafc887d1473eb48ecd12d00f4a59d368ebdaf186013.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..455abb618c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39422--876761904c850a8bfd7e4e54c3534c6b5af1413cbb19dd0e88d53a81a31660e5.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c53db7f5dd..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:17" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c4a4be9786..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38374--363811e7df42cce689c5a4af01dcbd0abcda0ac01a5d845336278e12151b610d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9ee026debb --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38297--37b5f309a4bf4f1fb28833177c874851c9217085a5e7321844bc8b0dae4ebe5c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..507c55f340 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363402--1d25307b4530b0b17423c738a76a7b4cf28701f153bb1fff07b7435805215ded.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8fb9d4be01 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84612--1d2afa21f4ba5e628d04802b739fe267031df18ddcaf18a17fdb43219e2a5d60.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f64c9c61ca --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s187386--4952db1f6c91211a1f688b3c7534d77347609e0367f5f99fde0ac7a681b3e6f2.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_softseg.json b/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2star_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c24371f5af --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10580--ca567338497e40ffd266ce038c824455b7f1e921676e7809324980e4564c5cb4.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 274e997bc6..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10622--ee50d94e3cb68a0e5242886710762bea0912ee59202c56667c40efbe6d0e626d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_softseg.nii.gz deleted file mode 100644 index 06ebd2b162..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356649--0b95f480ba6bdd12064edf81ea178c565cb776e58b90226b077812e2482a4bdc.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_softseg.nii.gz deleted file mode 100644 index f32a90f40e..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80023--8abb232dc2388ee3b97d748ed8afac3c0825b6238f50e55e7dd2ec6477fe7ef9.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_softseg.nii.gz deleted file mode 100644 index ca49467bfb..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s185789--c4cc09ed00df11bf81e29f3965c1af595161ac700437650103c623386d6f14c5.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5e70efecae..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37060--ff2c51dc3ddc333352b3aa1069dd41ad6d2dc783961380ad6a6c18718052ed36.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b6e7f784c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37048--301c1032e30cc870728621cb3bf05a2008993fd9b4d15bf668e76c6e126d6bb6.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 8eef06d232..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35719--88cc7116f1333be3614a5f38571d73d25297da28d307a35e4480002852d27103.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c00edec4a1 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35662--f182da99854fe6bf163e457fc3b55d433946dd39d0391d7decb1b1243f846031.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ecf6fe8e2e --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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0000000000..92b4b83522 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79992--ac72ea657005e155e91895f8969a4d9f165c55660537947b7eb31e7927c94078.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..180bbd126f --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s185760--73a561dbd3409204423d21cf0a4374d5caab13975eb0f10583cf647bb0ffdeae.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma04/anat/sub-fslPrisma04_T2w_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0cb975004f --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9038--ae3e55bc3568be092d02a036e4a7dfa593960fa6d4fd8602d7aedbc1c6f403c6.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index bb606ab7a4..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9080--58bb6a997ba6a5e9588307a97800e117962a41085df28db1636beb3adafcc96c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.nii.gz deleted file mode 100644 index 052ac22c65..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354427--740a8c7136c3d2300683c886c75694801e6873837d586f9dfecab9abb310038e.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.nii.gz deleted file mode 100644 index 3e68cee8c0..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80871--b9e3147ccbc8d31a01a448f003845d8679eab2a9148274247cdc2020981caa9b.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.nii.gz deleted file mode 100644 index 79327c6473..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184979--ce088493e01e2df2957058f5a4e5a98d69dc10265962c6d9135be59d6185bcdb.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 82111e4364..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37820--3780b88b3cc5a82cfcce7e4a70e55a9cd1e6baab0491f490c3d8b181293ffd4d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a02afa3f4 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37801--68d4f59cd617af1cce9a1d8c03a9269e49a559567bfbfa94ec9ded33cb461113.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3a815eff82..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36820--0466789f9dbedeacbe2aa9967bb730c1f528187f4759c2e7d34de9f8c3fdc86d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d42cbf39d9 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36821--aaf07f762fc8b2913fa9e4f95a326c2cb7c7a3e5c548867f467ca77704017a35.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a8a7ae0b6 --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354402--d44394f703598b04a6a2776679cffeea6aec4e3801d4a521ade130f0bfb40447.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184949--bbfa8950a1b6db2e42dc49a64fb14f21f0679dcc338c215d6010c60e38d93d59.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2df714967a --- /dev/null +++ b/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9393--fbe13d234ee51a43e0e909f5deb4c187f275271cc86bdb360a03f618348c1dbb.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6effaeaa58..0000000000 --- a/derivatives/labels_softseg/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9435--11b6a46ffdb9dc5b948f3581cdad7bda435ceb96e7b97219f51fac6b4d20c60d.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.nii.gz deleted file mode 100644 index 0c168a74df..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368608--35cea85f25138fdecc8d77644aa06e41216a844613078655c109f869213c7d03.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.nii.gz deleted file mode 100644 index 3d164391f1..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84582--08c69075ea7c4280ab27d46ce70022df3e63db2b1ae0484d127c257d95a07bb3.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.nii.gz deleted file mode 100644 index 04c87efa88..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s215070--d028aba27c3a81b54597e408a7154b514f236aba1dbad0179b48206751f6d530.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9261217358..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39085--b3b90e855d18466f56eb29d3783928910b8f18ef0ac2d5942e576f84fba24857.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7268088a3d --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39103--13bd67f0d9cd77a880e03a196f75c52ab100ede5de85a41778fbf5c4a5e9bb45.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 62e5034067..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37151--d47a50d5d897e54171327c8689d92aaa7c3ab2a9768181cb827aab807742348a.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..727b7af09d --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37127--9153615f8a02692adc7038dc533dc1c3208b84139e5aeab22112156f19330578.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8bf6be18cb --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368584--a9f56f429689148113dae2dd2c37e9b0d5c49819ae78e4d736dc060d44e90af4.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dfc3a09f4d --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84550--91e9b04339ff60cbbab9992620536cd0d861ac204fd8089f0aec598d6b1ed3c1.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b7a8b41710 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/anat/sub-geneva01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215042--6dfacb130fa68c1aae66f4ae3e6c0628d1f29060963ef086986730f55a0b29b7.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_softseg.json b/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T1w_softseg.json rename to derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae11f6eeb9 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11102--0c61a532bc33a5c1f949d2db08f299324ebc904e29cf52990388276f7ed1dc46.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 27a9afb509..0000000000 --- a/derivatives/labels_softseg/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11142--ed4e45d6b7b48d2b5fbbb138226de63bb302c5556552efb92e5460e0aa93e3c2.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T1w_softseg.nii.gz deleted file mode 100644 index 7b6249d9f3..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s367659--97e19fb5da5aa77e7b6bd4d871b0c72942cdf3baca166b48bdc2788aa55eb8c5.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2star_softseg.nii.gz deleted file mode 100644 index 74de8c7e69..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85635--e8e6c26c07a172197a9318c31ca67e96b64719156f420fcf108b01ae6425b78e.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2w_softseg.nii.gz deleted file mode 100644 index ca973a81a4..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216591--b4917141fadc048973718b6013a757888bd08ce1630d07360e252fbeeb430fe9.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 48ee2db585..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39271--f46263ad3a048f2ab8b773f27535f420257c33b90c5c392a99b30b1f898e0f9d.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb44befb4b --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39270--4bf8245984306e2f41a602f169036de3be95e18f5679c53c1e7005d37b922785.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6424c14179..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:18" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c795fb3901..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37822--caf1ee45307ff4943c222c78d8cadd18de8fc9f572d083b2d89009dfdc99eec0.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json 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diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cb58c7da48 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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/dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85606--55a5d34c178444d65af1dae2c29346cfe4a59ee5fccddbffd68f42db796e1a11.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..7e28c4cda8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8018a1a5fc --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s216565--866344e375289979ebcf2a44bbd2e008e590ef58af9c4a9061c660cb9457a17a.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T1w_softseg.json b/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T1w_softseg.json rename to derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e373b295e --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10703--9bd2579e86987b031a63478b64d34231cfef7ba469a364a3a1c4edc15f23f5c3.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6f0482bd33..0000000000 --- a/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10742--e50604d1887a68b7a771ab93e7d9b4978480ba5f2bfc42fbfa1905515c83ede4.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T1w_softseg.nii.gz deleted file mode 100644 index 0f82059566..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362226--760a1cf8817bb270a4b3f84cd45b9b430487de8a1742e7dbd02f5985baf0c5a7.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2star_softseg.nii.gz deleted file mode 100644 index 1f27e38d06..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84795--b387c1254e0f506ee57bbdc51298a30130884cefb442111c1ccdb7ea52e3a5b1.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2w_softseg.nii.gz deleted file mode 100644 index d1fe66b857..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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-0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9df46fa529 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38406--0b81c7f89591a5e6d046279d209a8781739be26f29972a1d6c02a57f9849c98c.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3e5b866ecc..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37067--529a2829d839f899c1fc554ff9fb2b8ca143b520804a153703c5a449d5e6713a.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..92eddda862 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36987--e17a7b014f4df059ed934513a00d4d40bbed7913d119ebb22cf8af309d17b349.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_space-other_T1w_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206600--c877898990c55dad95d5ac4d82a0643c4eb451a104ba1a6beffbacff793d0895.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2star_softseg.json b/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2star_softseg.json rename to derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e8b811504 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10289--c4bd1a1f2e801a447de6ec8d5c27ca0c72cdbed9ab9f2a12820b40fbafdab2c4.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 65116274b6..0000000000 --- a/derivatives/labels_softseg/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 76d1977053..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39270--95a62e4a68f924545cbbdcc1edcf3f300a48bdcf76433decc17a002b590f3414.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aa4671ae63 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39267--442efe278b39777342113597db26430381a0593728484ab5abc3711f2dad6a80.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3f117bd89a..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39061--daa47ef9c1d0b69fdc40e9d5b342085897a82edfb6b314e17cfae711c63890c2.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json 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diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cc7bc0a22a --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f9fbc4223e --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/anat/sub-geneva04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213967--059012f0aaab2bcad0255edd5edd15bf03f19befe6226d0c8facc21633f84cf8.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2w_softseg.json b/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva02/anat/sub-geneva02_T2w_softseg.json rename to derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..81e83f3e33 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11035--85cde8bd980cd0c116734d1fd15761c8f55f32f346dfb3e47298dcea55a3ce31.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4bbb84d721..0000000000 --- a/derivatives/labels_softseg/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11072--24d37baed2a1e5a8eba1b101952dcc911e9c8ccf070807c94aa20ca05a1edaf4.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.nii.gz deleted file mode 100644 index cfa77f8a07..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361313--1097b38683bb2373d4ddca942fa74f91b50c6580b72996024f1e402f5cb4526e.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.nii.gz deleted file mode 100644 index 9a9be8b7ef..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83290--c66846d0e52af5d0a35be264717c05bb1214b7b19f348cc440ab8a48ea56d313.nii.gz diff --git 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b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9e4ebb0406..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38059--590a1bb716316059b59f51c915bfedcdd9df6f3f7febbe8acec944b0e4d7e853.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..73779ea994 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38025--fb693c874a71c65c9443b7bcecd598426ba0c443b26f4d433092c214fe31e716.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6b83bcb56c..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36918--f4b86ef47fe983350bedfbd6d6e48c644547b04d06936ea1d357506fc2ac75d5.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..544ed01b63 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 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b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361286--e262a57f547117af635be79ccc8f44f39e1ffc5ca79221fa24c7b47f40993854.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a318198c78 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ca59ca3406 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83260--5013d97f0152a603d5590299742dd409b79ab3e1fa6803c454a89b2ee5530b4c.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..7e28c4cda8 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9bdc037d16 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/anat/sub-geneva05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186136--ab625061b04eee03660547c99a1da7a898677cff44dcc4319b52eae78db720a5.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae35d9dd3b --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10174--c14da8591af3e13f856cbb1e522bb2c930ccdf0fafb1fca3a1cffbe29f2198d1.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.json deleted file mode 100644 index 0342cc4364..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:19" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4a25d645af..0000000000 --- a/derivatives/labels_softseg/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10213--ced18fa0d0c8a21479cdb77be64c79a58364d6ae9a2ef51d8b2777ce0953b845.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T1w_softseg.nii.gz deleted file mode 100644 index f7948f0636..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366550--640aada9f30725c81caf7398a17c9f7fb33ab2fae520df3a20da0c9d07d9c3a4.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2star_softseg.nii.gz deleted file mode 100644 index f5212134e6..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87536--32c38f9671c4e8fda753d925dd7277f8cdd86c4ad71e78b35a91405a391f40ba.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2w_softseg.nii.gz deleted file mode 100644 index 29215eaf98..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s212955--147a2c470d6487578fee5e6148ef8f31a094956cf9ddb69d37ff9ac11f83dd27.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8987a9286b..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38687--50ee6723af4ccb8f4d536c2cd003b038858e0ab230c95103b69d880dcbe3dc55.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b24b25c598 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38669--496e7ecb7e8db49a82a92b19ba0e8c4fe38b81a6c86289f662ca90abb790691c.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 9b2317c0f3..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37690--c4d4c0e501fbf1c4dc839e9959b8e7ba59c8d32256e94d4689035331bbcf6026.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bd016cc044 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37668--4d5f12406a6f7fa0e6c91dd6ed4aab25c1bece023e6322dd4c7765835c3f6e92.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b2410d0e00 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366524--e4c80abc341969ab375699ee0e13db65c8402d1e61015f2ba71d758ca16ab47a.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..86e9b9044d --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87506--394b73da64e6529fd3a83e5053499e5643f336fc6c256fb3f05023a2ec3bc2dd.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..468fcc1c83 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e5dd272020 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212929--3736fea88e2771f4d48403057243fa3f8743190955902bd3ebd07c9c37202d6d.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T1w_softseg.json b/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T1w_softseg.json rename to derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0055a9aa29 --- /dev/null +++ b/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11242--2ed185d633e1650275679fa83f9ec26331819d36a484f29cd3cb3b2f507d1829.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 92b70cdf5d..0000000000 --- a/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11284--672ee709c314fb7f593027e02cfb9c6075ece61e7218c78f901fb8cbf8f179c7.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.nii.gz deleted file mode 100644 index 3b0608b919..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s351474--74630e0fdbe21ce2fc3e50edaedf2f4742e14926671d2796f2bb6c6c74460ea1.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.nii.gz deleted file mode 100644 index 6f68fc71dc..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82591--246f9389b010da5ce635acd23f3a056a762b033ca442e1b1ebc14c3428af0c8b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.nii.gz deleted file mode 100644 index 81001fca14..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s198632--1698c4d634d40fdcd22c9984536c978a099ad6cc7fd83c4def4e7085936282a5.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 68157d23bb..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38305--f95f97a84acb4a7dd08b800b51e9a0fa9b8d5f59fcac85bb893b97b202b2852b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a6f30e52bd --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38275--a0501e2a0b21dbc5cbbaccad32e1987009907fb8bf3af6093e84eba45f73a06a.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0b08e65c50..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36566--a75cc0939ac862d9281dc95574d14005b63f932fa28374cace60d8c45c7743bf.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..76b1a540ed --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36554--921430c3d0dabe1ff2a32f8f07e4fcce5a4bd4a32bad54e10857b58765e07129.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7a5906830 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s351449--9090b44e9803287e3d4b0c0ad15bf2c99c976010b1a0b3b70bc46e2f009272b3.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e51ab3b45 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82559--7e6744d39399b59d6f667b252920f60681e45d7cfba70d90a483aeee6478de2b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..468fcc1c83 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c940469dbe --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s198603--d256397368a2c74cc2e5de8e48d7cdb76d51b70a32ffe4f8771ed8b1b45407aa.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2star_softseg.json rename to derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..17edc9e25c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10018--4db7a8d8356ceba646edc439fe9878d4bb3e1ddac0245164d40f0271211019c0.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4dc4dc1584..0000000000 --- a/derivatives/labels_softseg/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10057--520ca1fc2b497510d2d232e58fdf7867bf457a5c9e55de3b2beb8ba8b272c028.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.nii.gz deleted file mode 100644 index 2929496d31..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359236--285bbed5f4239eaaec894d1ffeaf713ef22c322dc360aa4af5b367ea02f7f0a9.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.nii.gz deleted file mode 100644 index ae7d63a690..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84131--3212e47d677bcc337b3cd903935b9d61bb3cc94ed956814317326e1e5451a073.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.nii.gz deleted file mode 100644 index 5ae0caff7c..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209064--6286949cbe58ec184118007d5c032f4e7dd28c841e9921945438fc133124641d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f9d79a4685..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39159--86a1740ca7e1c57067f3ceb43db682a8215a16100dbc3f47a8cdc71c399d5cf9.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0fdb90783 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39139--534bfcd9a3265246862e430219e0c9d0707125da6bfe53cde32a706af15d6f68.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3aa390114e..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38128--28e499b36ae8628246c3e250d7abada49067502cf8f207e7429ee97babc28853.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..94b1b6450b --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38083--40ff6407bf41fe12ca8f0237deede2b431bbc1d9046a59f2fefd1783fdabab9d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9c10789755 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359208--b3ff90834bdef208896713ebfb3fa2e0fa0cee2ef7aa62b7d619ded1f46cd4ae.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc8341e1ac --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84101--9bc5cfcd7c8b9881302a64ba696fc8f9e217ccfab725df99e8270a3c4a6a4807.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..468fcc1c83 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e2149c3189 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209037--64db51c9257d69747e9aa299ee60beb284b8211ca6a0db2c9d4e1b5ed708bd81.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_T2w_softseg.json rename to derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ecec6e13a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10212--e949e3c84a529cf7849e314ab48b3c5c25307c3af01c426883b24f1af66eecee.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 0f00634069..0000000000 --- a/derivatives/labels_softseg/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10252--14cc73887f2e8f338bfc493c68a79b7cd653a8ee909b27287900ac414e12bddc.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.nii.gz deleted file mode 100644 index b05db39474..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362787--7df312736b707db594b9ccfd7c9437ad8063619ecb2aa045c4141203e45e8932.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.nii.gz deleted file mode 100644 index 49338fb776..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84039--2032a0b2bf5de8d9d204b5841ec94a3406bc8cbdb6d1da21f80ad48b5d015381.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.nii.gz deleted file mode 100644 index adcd4dec26..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s188373--d3db0cfa3d4abc76f2df3e85c97f26fa92dfbabe3e737ba520be5f3619f54aa9.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8d7b71b3dc..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39091--ec5c5e737c14e3ab00d22f6cde2efa6a1a66bdf19001902b11028c5eb26179f4.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2bcf28d18d --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39061--b491ca7961bf4672b1d4d83eafb15931c0159d6ff91df6b8e6f5a8a43b5edf5b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7427cbcb5a..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:20" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index aea62d2c27..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37906--3f548458ccfc5596eef9856f539b8212fc261e11af5e32bec7f8cee99f9195ff.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1a3ba59d95 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37889--f97e51a323ed7cc72a039cec9042fa2cc86760f5290ea94ac976a367e51f43db.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e7fe64e0a5 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s362760--17c2a3ef069dd883a8edc17ef9cd0233d31b97db79c52ceee0586f5ce7612ff2.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f89848d0d2 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s188345--c34c33983ca98014c1e9413148daea64d5c827f8c217f138ad89af504b3f8915.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..633d10752d --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10214--f7e0066ed8c3973fb38170df77be47bc9c9a09636613cc422d37ad8d5ff5b208.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 97f23d2065..0000000000 --- a/derivatives/labels_softseg/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10254--8323c811d1c4168ed247bf0700b81c9caf00eadca38e9b2d53492bd85f57704e.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T1w_softseg.nii.gz deleted file mode 100644 index 21fcde9859..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357361--47db86939d83b549e9e0e02d68eeadc9399b6d1005e736ef68df5d9a3afadb0b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2star_softseg.nii.gz deleted file mode 100644 index 51ad631070..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80246--08e2e698820ae9ecf45a497bd97b95f7a75007ce1e6b1d50facb14a53c411726.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2w_softseg.nii.gz deleted file mode 100644 index 1289cad1ea..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184049--54c22544b5f315799a8d2530b4b4a5cbbabd908467e86210dacc1c4671257ef4.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4e3d9f3c4c..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37687--4fa344315a8a191f22e17ddb44ca9b5d57f8f2ca5e07b758a3912770707959cd.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..21656d05cc --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37661--375cda1a8cd316073ee6878487ee57535849cbfb6bf07e3ccb3503536cd52135.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 47c01f5b02..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36491--5f8be21f70c5d942b8b88697958076fb99bcc0d23f4b18570d99433bb3e12890.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c3d312d410 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36448--966f630dd6d625c155e70a8a9a4eb4590af0535a09488e9bce6df0eb5ad2dd12.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..918da74a22 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357333--d60cd7eb975ec292e390d7f3de38ccd268906b93fe5902abe3557809c8dd75de.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6ac605073a --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80215--3bc44dec2a40ed9c808633710301c8a377929330149488cd8aa699dcfcaf07f6.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..50bf61f893 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184023--ecb592328935c1fe1bf05ca8bdec4014631b491f1d266084aa73c7a94143763d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T1w_softseg.json b/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T1w_softseg.json rename to derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2301a79fdb --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9294--8f37d0c717c34728c09123bf082cf53c73faba2b581323a397c5df2e84715812.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e7a1251f8c..0000000000 --- a/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9334--d414f9bf6299ac72cd41f26f688979be48acf2fe61724e9f1d2774a627803bc2.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T1w_softseg.nii.gz deleted file mode 100644 index 1683ac10e7..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363940--15c0232e3b5aa3d7db82f1f4f7fc20c8ce1d1d00a7f864f779623c6fac5a24de.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2star_softseg.nii.gz deleted file mode 100644 index abeba0adbc..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85063--6b079b88fb483ae750863ddb21714ec2e048ea838fc486d89a5f2433cc4ca442.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2w_softseg.nii.gz deleted file mode 100644 index 04f482717e..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211646--c87d32b0388e8b73257c46410c1e2663a23d71fe2fcfd26db93ef9330e0dc080.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6e031122f4..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39162--74c347094469db1a4076c0550bba6d6e8b3acc95d8b3e00bc7a27a5d1d61ba2c.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fd61f1a89a --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39141--be233ea3260cb077ed0ec98f7774d63993b3fbcf84b3b200e231d018dfec28b1.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e0546731f8..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38148--2ccda5ec5bb77b16f46deff3cc54d64cdf480bede96f4c9b3fd386dc05811d8a.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b4efbc8c68 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38121--3c53b9d2ff157518ce0cdfe508c10ef85f5102f609391ac13f3b24eb1cc49810.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4db4cae91e --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363913--fac73ef81768d8c46bbe3f3213bff53628f52de2ac35babfd19c7ae5e2ba2fea.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de3ec53133 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85032--6ea5a7b3dd21deb279d786b280b1ceedd9fbf25cceae9400a346bb8875b2449d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ec339220c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211618--30d5187502c2ce2dd21932ffd21d002b309ff26e8468dd6e7e0429d651cc3494.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2star_softseg.json rename to derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bc243f0aa4 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10480--7b3d7bc9d1fd666d16e9ac4626ac363494b4c3388e7098594ad2b89d7a9030c5.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 13ead1b3b0..0000000000 --- a/derivatives/labels_softseg/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10520--57bb2ebf02586e763c0f8de4a57223b36ceafac50dca391c06a79be3cfc6da3f.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.nii.gz deleted file mode 100644 index db5d907487..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355269--8a3887c6334bd61d33f752ab70a41c2e42eac9e8eace71ff0d6a650383ffbb6e.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.nii.gz deleted file mode 100644 index 54e79603ec..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82157--2765338c7ac96d5925e67f8cc368dcbb7176bd3dba798dd62911e0eb9605f90d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.nii.gz deleted file mode 100644 index 23ede934a4..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s200397--d5b2812568d9b541a31513a925bf7f6dbd19a7f4d01a40ea1da2f911178bf1fe.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c2976d8217..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38080--1bb34a07fb5b0fc22525a98ab929eceab1855d2264ca5992212b908670aa089b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..acc52fa578 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38059--238bd6839d5a4c23be4e6f4f26cc139601900c989f2ecf4464aef972753c8691.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index de640ac995..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36290--da0040bced5daac4ac4e20f9458c335c43a00e2c8ee228a9dbcbee21d6c4231b.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..900ddabf9a --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36242--0f2e8d06992adb2ea61e9c176841451f4d22e41bc8dc9b7a0170dddc574a5668.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a2a9ddb2a0 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355240--5970c25c4769d175bb091c597c34adf8b48bcf19bc2e2a82d02894f995a09655.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f1f622b63a --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82125--468aabe82957c981a08a7972f5d601fec386b51bc049de69c0e2bb7a168cd4cc.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..76edf39ff3 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s200369--e5a74beb7722ed3bf1e99abba7a8d2c5879bb5a0b3b35080a86da59251a6a873.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2w_softseg.json b/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_T2w_softseg.json rename to derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b0dc51b1f4 --- /dev/null +++ b/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9763--2ceaf79cba85530e35a0a8a2d894d2610bdec2f09a127daf4389561087175223.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b87e950f6c..0000000000 --- a/derivatives/labels_softseg/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9804--dc8e5c92aa4277d8b425497315e08c418cd978d6e6341b8722b85834f2a6d4aa.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.nii.gz deleted file mode 100644 index 35c59285d1..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s421857--70d65283d13e95a822b64db9aa985771033620eae665fbcbb1cc1d4a7032540a.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.nii.gz deleted file mode 100644 index 6bf698d75c..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83257--f60bbf980a2f44953eeffcc60c2b5948ab5cab2f1c39ee9b0664144b5d30d7ad.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.nii.gz deleted file mode 100644 index a36043289e..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s205160--c25bb32e5b74d013784a670652cf7cf976ff187afb7cfe329e843004c0e933a9.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1a7f4ec564..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35815--48dee992a04b138267ae747727ae76f6ae1409b9bbed7a5f765d20ee8c8ad933.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8827d477f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35781--8879ad15e9fb8e034d24f788f237723e100b9c12874427ffe2564f7387af35bc.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f337fd45f6..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s34975--395a633fcb3cbb855d857e06d8ab75efb76b3ad9dfc4a562a4b2e50d3355d37c.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f4ac51382c --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34868--fdb075b52c5d55b163e905291571bbbaa5d1160b9af8e6faeecaebf79a1b46ab.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4ccf8cfadc --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s421827--2dbbc57277ebc43379b6678308bb73574b7af5f2593e289fcc565087c0b5c6fd.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5bf73f68ae --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83223--37e3d3d7974c4d10c2072c8b53cf5f6d8bddd6b8d7ac1c521c26b004943b94b9.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8360e3bcc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s205128--ecf5e1d6480e396659373f3515d1c50491aae26e6078722101e19930f4bef999.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ba91ebef2d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11927--9c3a67328475b6fe04647429d71e82863065d0500ed826f9d449df62d5252c58.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.json deleted file mode 100644 index 6b43fe629f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:21" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 723fe6f0e7..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11974--c2ef622a04332ef8b3a4d7bb1d5c85dbd8d3fb020170d117b68ef301d02e6c87.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_softseg.nii.gz deleted file mode 100644 index 2f9ef185fc..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s420111--4fb4f51a92a6349f085d14df2a0da6b83d53fc29f6801f8e9e6e1bd5195a9547.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_softseg.nii.gz deleted file mode 100644 index 535ec34bd2..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84223--8314cbf5246f91d0d60f9d5eefd9e36b761f6da5724bb9c66a086c822c18facf.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_softseg.nii.gz deleted file mode 100644 index 575bc51c04..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206702--9f813894ee82af1b3c0ff94cd8aff7359e4b29b8567a8a3dc5526a527c5ff1d1.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index fae7a76919..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35832--7f50b8eee470ca609fd6dd25970f9da8459b0dc0bb49a2e52237110e9fb2af74.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..75b97f8b6c --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35883--7b4d9d55ce72429fd10bfb8acdda2af53abf9382c0a25e706a7809f9e12279fb.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 34089bec31..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s33701--7e39021ca8bd6b078aef260779cff80bab1ff7f81d109285ecbf6218bafc0b21.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de1417fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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/dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s420076--109334e31a6248cb185876875d4bddf15c58f7c9ebf1269d9f07ab9b407ec827.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..51a5ab8478 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84186--0cf80f303e24b3e4106d8547e1ebc158d19f92a26020aa80eaf1d317d69bfe8b.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..6af37c5def --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7c0d8dbf3a --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206669--896c69c616d1395945c5a4e0e61664c27ed0bfd41c62a293f4e2ce5ab9b9ed75.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T1w_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..888ea66e90 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12323--4c0b261f5f8ac9dbae1c1a5dd526cd7cb969362c8f693598c4d2b88bb1d190b1.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 11d2f49a4d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12368--0a6cdb6f68b732b619092fb208c242e87e8f62424ba14330f7d71afd23407b8e.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.nii.gz deleted file mode 100644 index 4d95468b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s424339--de94e62182fa7f08b82a8e40c9334ff1c1413da725a9d19d6a10ed6a30f2320a.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.nii.gz deleted file mode 100644 index 09bc3a2bd0..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84119--e8c5c911a3f09c2f9d633c3a033a79e52a281e8ad51ee6a43e27428d75b0cf36.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.nii.gz deleted file mode 100644 index eae28014a8..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207627--0843e791dbff65dcc3ee3ddaca0898a7395dd8552482cbb1b163f94e13bd64e5.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a414f15f24..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37955--a7f69e0a87a5bde7f5265db8de362da52227d77aa3df8fedc3b032f5f218a0a3.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6e27113c21 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38018--bf1aabdde57477d2d35e01ce292f7bde978c77ea77e8616603d33c61aea2045c.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index bca3e5474f..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35748--7ddd4c15b72a2a8efeb2ce4230c8e692bb586c69dbf6a7c5d826975bdb64c607.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db89ea79a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35610--3ba4844ba3bc7f8e5b3b0e9530496b7dfc3307e681d106b9caebd48157c3d8b7.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..397c5f402f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2fac953b6e --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s424306--5bb8ab17c3314ee3493de9c1408d4f28c0dad2957916cc80313f0fcf67b36822.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5ea037fd89 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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/dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207595--a2422c1c01f69224efb43786efbc9e630348d7525c8ddf5773d4691b81ebbc26.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2star_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3803af0c31 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12200--8ff1889187fb19d1a65b9967546357d352f38957b52a4e9c71b52f8f9773d878.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a60a7b1318..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12245--5c01bcda5b6b3d64de6b2e8f4e91ae73c9903748925346fe7dd61c0b5e20836d.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.nii.gz deleted file mode 100644 index deac618b45..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419803--dbad5204ca9c410c42192b8bad3d7487be2be83f43f4a8fe550b2ca70a192ad1.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.nii.gz deleted file mode 100644 index 3776e69688..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83561--f02d5c5ae3a68d4ae23561c9246b0091f236ffbf73f722acf0964312f3789257.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.nii.gz deleted file mode 100644 index fef046a9c5..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206912--ad3c3472d56c2ebcfeb0801a75a26a80c66f1e21bab79fe57ed1a4022ba94345.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 47edef434a..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36830--1ac069d05950f34fa011c7c5f5bc49a659ba416eb335b17818e29d6bee8c7632.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..688a9b87db --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36762--2bb1ac904687a612d2628a2861bcc7d13070893e6819bafe5b3cb39b3add407d.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 47a1813dce..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35398--7629cd3282d73f2484a1449ab41937c4738cf9d3680bc6f90a51be8d49630db9.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..899133fab1 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35325--15d0eaf43cb82b26519631d1118da95388f367d8b796fceeb0b0b543b9c0a8da.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..397c5f402f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3fa35e5586 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419769--81f4aa9c483b2cb47f12c35fe07b287cc182e5a04535e5cdb227fe1cf7eed66b.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a824dc695 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83524--988e148f857d4c9032acb625e89e216386d7e87d05a682bc59834b09f00a478d.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..6af37c5def --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..81c1ec0253 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206879--ebb8e8a4aab60e36a96d92b61500a42de2e5306edfad5ca38fc76a8a0f4b8ea2.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_T2w_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..91166ca963 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12052--bb7844fd49be82a1f84f1edfa2ba054c90381670a1c2c9f7a4ba898076aba5ec.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4b0d20ce64..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12097--773b0326a7bb6aed5e3303c621035f758630fcef56679223f55abb5b90a9dffd.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_softseg.nii.gz deleted file mode 100644 index f1d2695fb0..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419752--7915540981ec99221ab2b53100877631b6d46d4803934fd6440b14f904487cad.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_softseg.nii.gz deleted file mode 100644 index 0207943df1..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81894--84a578845442b5c1868eadf2eba9ef5f303c326276ea76a7dc5d83adda3e8918.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_softseg.nii.gz deleted file mode 100644 index c91a80263b..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s179321--d023c1dfb3d38e6285b3711076a51504327b179e6f158fb5f24d3f078a1cd97e.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 2cf89acaf4..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s63074--724b4aef75bb5ffe6d5ffb42a26bbc175f59c8c1377545836a0dfc07034d5372.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..77db4de6fe --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s63006--c72dfda114710ad2bb73548935e9b26a86dfdc668c98ed54e89284ea7f40ce14.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index c05b2a0b2d..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:22" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0fd26ddf77..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s47127--b23df8bbed02e67d899872fc7887708c648ff9c92a45cb66d48ebc01d826b419.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..751b8b0d30 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s47078--478bf2fb30c38a5fa43d3af2936bc299556e5918abbb2b114c0fb9ffd9239c4b.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e91bf8a03f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419717--3cb651c83492ddc151e295a6ed2c240d15c837f4e219b558294de4934d8a5696.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9a3aefd83f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81857--54ccf8ab05c71b86fab7c1af6a483bd166fd3d31682ecc86678e54f22a3a0072.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1d7754269e --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s179287--6f90b4d089efaad8aa2bb0caabe4eeba7e343465d4d1460017b4666ecd250c69.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_softseg.json b/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T1w_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..78d09b624e --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11573--60d1fd081b03e9e1f580663e59cd4517521a43ecc1401450c2fd15e2f29339c6.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f761883ee3..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11618--4168a3908106666ae360155fdbe774a1c0f33e74e9478ace9539ce6b1d98fa39.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_softseg.nii.gz deleted file mode 100644 index 9146e653ca..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s416153--0252aa42ae540e241561bc59371a297cb7c3ef65f0fd6ffa78dc6b7b12945e5f.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_softseg.nii.gz deleted file mode 100644 index 100d2413d3..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82953--34662e310581613118a117e15a3ebf1e3e11031e5cc8a6c8f741bec9eaddf570.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_softseg.nii.gz deleted file mode 100644 index 640b8af328..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197581--af49c6eca1634ee79578200dcc31befc4d2a9576c594c9f05db7c7cba5138a00.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 73513d9315..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s60852--cff923f074463570feed19558ff9b80f010377a46d822a1080d6e74a81de9611.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..83280105be --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s60804--ac592302853045345eaa7b04de83317067f15a1427258f41b89a6352c03b4b34.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 579dfc0d48..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s48354--9b1269085cacdfe0d244eb0f1518d32fbcaf392e48c88f68d2224df1d7a1603b.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c6a467f94f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s48279--a3fefa7e60782e0e742677057d2e84566d40bdc22ded4d6b5349b8b03613d76b.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7472fd014a --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s416120--64d9da305d1afc9330b5bdf649b3d8987cb2fc2d64df000b9b20ec88a74ceb61.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..34eb5c1b9a --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82918--77d680a2c247740f238105ae2c54e08ae86caf11865715deb121f026740d9f7d.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..14b4bbc189 --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s197547--11f11a1d403ed8c0f78e37472a940962de37bddbbb42876d4bf499d8d4721cfb.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2star_softseg.json rename to derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f256c6d14d --- /dev/null +++ b/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11804--770c7c685af4e624fb39b75ae0a5f22e91a1f80cfab4685a9498cf7bf8add8fe.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index bb1942e715..0000000000 --- a/derivatives/labels_softseg/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11849--9b7f436f75cdf75d292b50e3b8f42209f2fddee7b81903190f3f2e5a9011c637.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.nii.gz deleted file mode 100644 index 1bbd3fae10..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359299--c5d988b6abd9d29bd51333fd56aaf3e972f754dddc4ae96527a85797c5f4fafe.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.nii.gz deleted file mode 100644 index 375969e356..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83429--059cfcee57b63ffe2fd33be61ecc1b8d662eb47181a120f2debd1684b5f57a77.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.nii.gz deleted file mode 100644 index f52f4bd422..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s186138--69587f3ec9789eb4373aa93c2c472685db005055f393bc0ff24f3830a98114ed.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6df4c61b19..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38525--5fbb813eed3e36abc526db34012289d731383e832027a711cb4b875689754eba.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8b795dcaa6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38494--76cf05738943a6e20791bc74284f66f2907c07cb38c172a14b27021aa18efddf.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 79eef79a06..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37665--a84a77f810df0da033695cd328a2a278b0c96502fbeecdeb48716c1da19248c9.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..21c10631cf --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37587--399a598df99fe7e56a686ff90303882f4c82908d1ac9225a460bf99b9c69154e.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..887106e1eb --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359276--779dd9fe58254f1fb043d1087399b1067550c9fa38d067f8028fd1e2c7eece0b.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3ddf2c6bd9 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83409--658f23a07a88ecfe8808f0106733944670e3fab663861c928ae67bc29cd5b8d2.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5f2a467e09 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/anat/sub-mgh01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186114--dfe401ca62f5727c3570c9478a39c1469c149c4876e7e157aac69b9e5497df2e.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w05/anat/sub-juntendo750w05_T2w_softseg.json rename to derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..31909341b5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10159--6c478169fd38015599b4c4988330c3d3cae62af0fc6cf8eef50b75c4f2e8015c.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7620d14445..0000000000 --- a/derivatives/labels_softseg/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10193--b60ce840a1a1361f3c58a5fa378909b7ab1979155376635e75a60ec696ef4f21.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.nii.gz deleted file mode 100644 index 50afd8241f..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s349599--8fa945b454b53bcda516e3682add4513b7a63ba4b9646f876b45dab40ff41eb2.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.nii.gz deleted file mode 100644 index 2950ed090b..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80571--04659fd3053748072606bd4534204b36f6a8ccb95f97bedf44a36258b3e46405.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.nii.gz deleted file mode 100644 index 327f9537c5..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s176980--7cf1879eeaca50043182c1720354d7eb2043824e0ae24a08545f30f315cbcd1f.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c3ff1c54ff..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37976--8f536a35fc6588f641b4b677ef435b622ef8b190a9abf376da7df01ed303df52.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d21c4a0c33 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38014--69e4cb59d749cf5b4c95dcc5db955fa6baf3e9f41a94b3ad3323f7cf9108f689.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c374806ea8..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37046--eedc26130411518a7186b995c6fc1570e5a655735eb6e217d08bb950cf8a9636.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c1e923c985 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37055--437cf41252c7ae2a96c75a6b5475cf6e4c5c82abc5585dbb42b48cae95455ca4.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e761f1a237 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s349575--86f7cfb2909cf796ba598f9a5c399da35cfa4f3c386eabcba2575fb90696cf36.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8e284c7d69 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80542--6e41384f3ccca1595317774181c57517434542961654886d151c88d2f0e4af45.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..90c9837f41 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/anat/sub-mgh02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s176955--762025e147f1adb39b8f02b6f26bae3df426d63c8a96d239a324f0356ea54b13.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1674cbb5e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9467--2e75135aa7ab3b0b782fbc92c2b2a8e99bab402acef17ddeecd85ff80fccc766.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.json deleted file mode 100644 index f2a78131a0..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:23" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b43b8413f5..0000000000 --- a/derivatives/labels_softseg/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9503--8bc351151e706d33e26336b00597097bb7381e6045ef8550184c5cfcc67bb731.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T1w_softseg.nii.gz deleted file mode 100644 index 4e29c232d3..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356082--7736510db42c7d3b00abb1efab51976115098df971725a963f8798f195f40211.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2star_softseg.nii.gz deleted file mode 100644 index 6d97816de0..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82043--1ef478e65b3bdd5f02a9a5e40dd312e754b428eaa1951f77f374f898dfac7599.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2w_softseg.nii.gz deleted file mode 100644 index 4b80e8632a..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183137--e8e6e3212042ea311fb64e00cde4d6cf35f6b53b03850db54d9cc79271a934ac.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5d21cb8aca..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37904--104ae94507afe373c6cc69bab9729662ea5d86a6a966323f4515c89b7387e78a.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e03f3e6fc4 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37839--5e38076e3abc1a9a285cb55dd92c9b0efb0d1050b24e4be97bc0ba823e0e8a5f.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1a3e78761a..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36596--d014c63b905132c6084c100f273cb963181a8709b2fce8ad87f1c0f0d69bf866.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1228850601 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36567--0e688df6260668b7c261c03f2874f1aaaa98f9d063e6176e1a15753fa1386eaf.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f5ad4a4d71 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356054--3b5f7ff3db71f0d5450541afc77f70a6e0b8ae9eff9927e29cd552c0b1e10cc6.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61bc5ebb16 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82014--82b51ebc40a4eede2f3553cb8ca9ce067ce4682dabf10727570b8f1f00f6e1ed.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..44e3ec2e58 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183113--9302ce0e391d0aad81994af136a316f2def05ac8fa3a23c6d52223975dc6bab5.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T1w_softseg.json rename to derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abc4eec23b --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9962--16c11433ba58020d2d2c0f120d7294872ed30a98b8acee72a1cd26dc445215bb.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5204e14041..0000000000 --- a/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9998--80a349dd14ced811a9e8372ee7f871eabe76177b66b1b56d674f5618164a100b.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.nii.gz deleted file mode 100644 index 020e92f0f7..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357181--d519e304e8b7531735e3ea99fe6579a4b8f42318d43be4de1e6f572093145345.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.nii.gz deleted file mode 100644 index e5c3aa6322..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86003--5550a5e8f079cb821b72daba7660c643a4f411eac1b032ceed5be4b8cf99afeb.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.nii.gz deleted file mode 100644 index 59ad53e5ab..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206853--0947c3bdf44b1e885003c823f2576a7ae7b770a29c6e0e8aba0d24466a8fc1de.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a545c49060..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38822--2fc8deb33a084e03ac3b5f363759e15c437441656d6940f76f226cba1f18fdc3.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3cea66ac8c --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38853--8af27dcddfc78db1ab5e04ba6f8ec5ecd61f1e0f41ae69614e425ff309f0c9a3.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6ee9a0e964..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38667--7de8361ec72ddb8c0af73e03e7baf2bb1a5114e690d728715466cfbb9a19dea1.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d69ffa70a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38636--421b4a885b54b888c4bb9e69c0de360c297415a90840896919d320b9711df793.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..44c688b823 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357155--2803b4ca571df8d2524efd16ff605d3386719554254edd7147423e2fbf7f38b6.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4d88815e44 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85979--458252cba67b35283215bc52c3b5fee67515fc8d5dbb886158c6f38b86fcb104.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f38b027aeb --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/anat/sub-mgh04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206828--871c775cd46e14582e3e643625ad6a294dffa2d60692868129a3543d77cc77f8.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2star_softseg.json rename to derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..04a5552ab7 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10800--e663dba06232905818c2b25bba9eae3dc34986418de60d12551e8b8253454af1.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 201206a0e2..0000000000 --- a/derivatives/labels_softseg/sub-mgh04/dwi/sub-mgh04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10837--4c926694f9780fda641fdabac72135f98ec645039e40fb9bb7d621d7747ee2e2.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.nii.gz deleted file mode 100644 index 3a7c9edc18..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355466--10485c7094f8e0da31d14fe6ddbe4074cab9935a6b5affb6bdf3f04d7956eb53.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.nii.gz deleted file mode 100644 index a4923fbf4c..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86326--365d18beb46220ac4e20c774d7155b14c56b17a629f8f6d62a5a1082d11c9643.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.nii.gz deleted file mode 100644 index f30c4b1da2..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207303--23f67cd7fd58271b8a4f4f8187f3a2d5d9dde86f831c393f50058f9485f053fc.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 18b6501a8a..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39486--5e090a423f09daedaaeb49ce54510c9e83d9390ca9bbb9b9129ce4290d1c40d9.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..731d017f84 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39457--d4ad03cc846adb5d980e60fe533a3cf557b88cac526254687b2760346cd3ab97.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7243aec6ab..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38341--3185c8b50d45f1defadaf4d41fbc3f686d5f8dcebe1ed55df91a42a0589ac761.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e58e56b64e --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38324--f364fea74e975fa874b0dc3e86fa58ca3df0841d83147059177b345e344caa94.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7e40ec68ff --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355444--5204f332659c48ebf082048c5f15f2f3fac096b2c1a9a5a5ad543da2cb4e3d4e.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d25adbcdf --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86301--289c506aefee4bcb31284ac60d9eb6c8ff59838ca72f206cec303899b6231ac2.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bba0086906 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/anat/sub-mgh05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207281--0ceb64864ddacc25e46006d05f8185e2f4080173514d48773b3dc9b1ed2c71dd.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_T2w_softseg.json rename to derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b1b1890738 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11107--7bf1cdff0055a25cff8c67c2b89564ce3e59249e6de7abaf9e1a4e76e69bb981.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6e63c48e6f..0000000000 --- a/derivatives/labels_softseg/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11143--d9898553231f14c23183fd4aab6f623d73827ec8d8ba0ecc704c9bc6cc3feb8e.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.nii.gz deleted file mode 100644 index 74f21609b6..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s350824--07df935c95cbfca6046f556d4c3eb1c2b6ea7311ccdb6f5ee02ba3246ea182db.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.nii.gz deleted file mode 100644 index d090ffb9f0..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81613--4c06f6759b0223d806511dc9737550b1cb02509e3fefbfe5c2377ebf6f9e2870.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.nii.gz deleted file mode 100644 index ccebd5bdeb..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180035--4237fe0415592d2bf53c1c635f19519c791e1ec042cf0ff18dc280c75336ab16.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 644fd41594..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37896--9f5f0ceb6905f9d7bb4061320ea90e3e92735f7083c90e8d7f6803f462031204.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cc0fce9f96 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37876--ba6bd7d76fb3608736012451e3ae7ce64fa5e000aa8a87a353e2510f537170ec.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0a66c7c0c3..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:24" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c66f3d3d99..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36434--04ccb73f25b8ab1b940a0f9b0eda7be76cfdd37370a01a24d8c20613401d1b1e.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3bea3ae678 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36478--5b98798ff40d4b06ff6c0f0b406ba4222b026769a77514523f595c58acdee4f4.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1b4140cdbb --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s350805--37204a7e563d4dd36f142026489b6cf5dac8df3ba312c328dcaf8e09760600bd.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e93e3f03a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81575--c8fb24ad8c191cd0d4d0eec313a8e7b76c94989f66eb293eb23661ab0684df2e.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a3bd8b4e15 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/anat/sub-mgh06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180010--928f0a164f3259aae19b991985fc1b112c2ed0f5e802a9b2dab4805af9d09856.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..870ff96243 --- /dev/null +++ b/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9818--09a30b5745fbc83c4f3e29a8405de69384a3cee69a6b1bb2893108c2c8e565b3.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7bef222a00..0000000000 --- a/derivatives/labels_softseg/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9858--317a6e9c07505820ad9b63305ef947012799721154e30ddf3dd0f74f422b9411.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T1w_softseg.nii.gz deleted file mode 100644 index fd0531dbb9..0000000000 --- a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s381084--de9565400568757aa747af066ce65ca761f7528fdb1c106a5557cde693a3de68.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2star_softseg.nii.gz deleted file mode 100644 index c18b91125c..0000000000 --- a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87555--b95514f214402488c1fa219b62d670ecc7fb845f98a0f7560eb1a6c5d75098c7.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2w_softseg.nii.gz deleted file mode 100644 index 7c7deab323..0000000000 --- a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s226395--0ba62599a014aaf0357d5673749357c9848d488287b65d6256e17bd0d47c6ac1.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 57a3db1160..0000000000 --- a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39021--5ce7298085f184aab59ac19b5b40161f4abd46ee432555cccace7faf10d838e7.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4a3260e411 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38980--e48bda5f04f370aca33e8f37a4f1bca6c8fa01ce794330da7442148f9f416384.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index daab33cb36..0000000000 --- a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38672--9d89529b3da2f0f1ea307477e49c8b3d437c58724be74877ea8168797461846b.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..576de5ad74 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38652--a5b49a1cbbc585ae31037de91f2415cb0de08c215adb6adaaf34559c2324058c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de8f797e89 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s381059--2ee33cc1b140bde076aa6092301900265aca95447d8aceb71a4b90ae6ce83b2e.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..961d81bf7a --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87523--4b9772a2369d54a2b363c706e789ca871a73ac8a2798182cd866286548bef72d.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..df667fd6ad --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s226370--da026ce8beada79cba30a2b90769bd7841b167b18f0d52a51df7a912f84308e8.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T1w_softseg.json b/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T1w_softseg.json rename to derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..10855e100c --- /dev/null +++ b/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11604--e6b322dfe44b622b7ec46892108e82a044cda1ba83b63a033b123185680d0399.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 41a6b7f91f..0000000000 --- a/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11642--ba2ac62d6320401d031609d2568384ad6c39ee54a8526ca7d95e6382d22ce84f.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T1w_softseg.nii.gz deleted file mode 100644 index b3222c9758..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356809--6ad55999ed8f7617849129afde10765938a4fd170030563fae3ce80a0e84fbcc.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2star_softseg.nii.gz deleted file mode 100644 index bbdb8fe466..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79379--38d94203331fa653cb54656f3aeccea0af1c80466c2610d0d84d9e2ed0e210a0.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2w_softseg.nii.gz deleted file mode 100644 index 4415feb4dc..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184161--5a5f9cc8610332f7b5f3c49b483ecc3ec791d5de6ac9381ba326c9b63fb533d7.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3a6b3243fe..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36876--04ea0b6d0af725cd58146fd1b5b5639b7a83e2c98936280ee40aa90ee75536d0.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3928a0cf5e --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36835--39b703289a8864c32565368db088dc0cb92dce0a515f74e45ada1f54a2db1202.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 66e11a5ae5..0000000000 --- a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35789--04fd05c7c1eb89745a051c4a84c4497113446c56024cc9f8cc1b12ecbf7d65b3.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..170af09f0d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35768--a92fbf20fd785f0078cdc422a6a65320ca17b6a26171cfff38998905924e2c33.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b5b9478f99 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356783--a16953af273a443bcdeb477427d15985ed2654047f49672d97c2daeb004a49af.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9174f9292d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79349--4388707ee52444785d7d255a191b05d8fe02afd81e8b483a07ceb5479a182cb7.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0fdae87da --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184135--881ad87da4fc835563fd9e545f300f6d6c3fd491c5197da12bc252e157909032.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2star_softseg.json b/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2star_softseg.json rename to derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de05f0ee02 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8942--6bb5bbc6f3a97208a2371b73609f5094d92d388926de23a0086cb8d298cdd418.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 2c29c4a265..0000000000 --- a/derivatives/labels_softseg/sub-milan02/dwi/sub-milan02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8981--236e90a169b24c6b269f73595c89fa7f6157c4afd9f6b89988c80184bede3c44.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.nii.gz deleted file mode 100644 index 42f1de5a23..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s376597--e877f18993c4c342cfd90a25facefa5e4bd08e89acc0085ec42274c2eb456f69.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.nii.gz deleted file mode 100644 index e3de01e185..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86524--8c93e48eb6b514dffa9f42f56d1da7f0ade08ca11600b978c16d4bd2653647c4.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.nii.gz deleted file mode 100644 index 38602caa32..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s224469--b31606fae2a8688877a8affb643b69896298ba11916c4da657d285d08f2ace71.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 22fb508b72..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39680--126d72175ed928306d9f29e9f71ff0748b6cbfd1371ab163af4a3bd64b42a427.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..26f2c393bf --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39642--031a9aadeca7132418e0f9cef401c4cf030b0bd419c12ed82a1a29b58cd1f1bd.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3cc61df612..0000000000 --- a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38390--d077ec93f727a5a08bd57bc005c9b54375765c03358a5f406723b29935ab0fe5.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ab70983d1e --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38369--82d815ce3bd4222591cf150d56b2784e1871c02251ae5384ccf09dc3b2b5d543.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9f84fe9afe --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s376569--149c0a6cb2ec5ed18b04b83589fb48da51e7d3811d9676ef7b19d6baa9e3930d.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5fdfe34bfd --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86493--25925c2f7a439f53ca010eda9e252a6f8a855de9f4e8e8ff7b829054fa69b471.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b996156c81 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/anat/sub-milan03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s224443--5ba2e259584ba462d3a20fdea09397a4f505313a7dee3cfc68c32e77b3b74373.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2w_softseg.json b/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/anat/sub-milan01_T2w_softseg.json rename to derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..79e8cb5264 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10857--88209ea8291e3ccce6e471b27f7bb5e97b16a489ea95236677c38450670cf718.nii.gz diff --git a/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 8ee3cb84c5..0000000000 --- a/derivatives/labels_softseg/sub-milan03/dwi/sub-milan03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10895--cdb1f65b7a2fd3cbb012bdb4f4e49ba80294aa29123e7cdea29d49f0febd4626.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.nii.gz deleted file mode 100644 index 55531c0fbf..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368524--14de6d7c78180f5c879a29ec375d1daa2c506db7a37595e0740651524cbfa1c4.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.nii.gz deleted file mode 100644 index c2ed7853d1..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83793--8a095bf0d8beda860e823028f2aac9c5efecfb77e51608bbf9e750004903e533.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.nii.gz deleted file mode 100644 index 2b55a95286..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s212204--37fbf3a7e6f2128276fd2b1ca8f9d4aa954d808d4ac2dddcccafa93783c20a47.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 2621729324..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38517--17c8167010ed1124cab8913075455d0ccb60bc3424bf0a280bc30d9364ee13bd.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5ee80a1231 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38518--818b224dddda26b1860dcaf4c7c7405f600b2dc7d25ef5ec13c38fd186ee0143.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f70fa82a25..0000000000 --- a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37338--426c6635647e6e3f485bdd3f2b2edbbd30913ccacc934df05cb9892d0ee27c41.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9d0f5b46ba --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37277--565032268cf81b0d33e4e69807c1b2e2258eac6b2c3f12628538bac0204177ff.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abf33796bd --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368495--de3476924dbe77e6c82900a7f1c387c411db6e7592df65c5cf9eb96380c00ee3.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..041a426d24 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83764--003f1ab716fa4fab6490817da9a27045c7d78255b72d71460e0e8c3c710e2eae.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eb1a333ceb --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/anat/sub-milan04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212178--5316b559dda8eda284ff6e106599ba1ffa7315ba75738017a41ab97293ec92be.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..00cd5fb519 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9936--d6010ad82a3638d58c7f1086c909ad6f750cc71fa48c25aa35a8a6972f51169c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.json deleted file mode 100644 index d1cc059831..0000000000 --- a/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:25" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7549013a81..0000000000 --- a/derivatives/labels_softseg/sub-milan04/dwi/sub-milan04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9976--0b285fc157eb3d877f9622a7586c8b6675c8c41ae1ec181c6a7a74507389df6c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T1w_softseg.nii.gz deleted file mode 100644 index e6e7043198..0000000000 --- a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T1w_softseg.nii.gz +++ /dev/null @@ -1 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a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 18a617bfc0..0000000000 --- a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39831--1b9912d9fa12a453a5aec53bf2557f875cdea69580c723d5eb188cab9d9535c0.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6ec71fa46d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39785--ac4dacb55423bd9195a6f4aa63bd336993e4d94ded70e3c84406991bf8efae43.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6b0a807296..0000000000 --- a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39316--eadf34802e539c55b3bf53dc10b32af71b7bb7c66c349510d207391f16f5a502.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e963a65d3f --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39257--b0d90e8b1d834c29de3f3d51d14ea8c2215fd38a01126ce2acafe522e81f143c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0579009803 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368474--d7f56fc9a8caa42307a15209a32c2c3bda651708e3f2e4355a7705adf974ac5a.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a5995673c0 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85500--51e5ee2c5110dd415b8e1d6834aa4ae34301525981034cff867e344d6a726529.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3487f3b8e4 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215851--09bcc9aff29046b3c306f85e84ee5b828ef07115eea6dee6d15fc91509b5950d.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T1w_softseg.json b/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T1w_softseg.json rename to derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aa830f0c41 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10817--f510bd29d13285f0b12b2c49eafcef9ed739888429a803d1e4eecda8f66c0644.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 87ce526d12..0000000000 --- a/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10856--e8b439f263c290dc511ba2c3718e07a62af1a3cc83a1e977fc417e8f48c4aaa1.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.nii.gz deleted file mode 100644 index 1e6a2711ea..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s370365--93fb2909ef87f137e522a2062f6005c31dde23292cf3ad3e1f152b2ed6f66c7b.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.nii.gz deleted file mode 100644 index 83560b14f9..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86179--808e462388362fada14c2c1070b12d6203b4d34a69fcd459c00930614a526804.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.nii.gz deleted file mode 100644 index 7364edaf73..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s219376--82ceb2f502a249da3a9b9c6f2f6239bbad341310551c217aa94704902362ad99.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3bcf44d10f..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39600--81922eb4c1b211400395b1693fc8e6b5f5d729f06171d1ac0934a2ab5f282979.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1e46657a2c --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39493--ac51b65775f61f545660d8bf4caad9a41569f021d63e2940e70d87c2311f8031.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 781d74a274..0000000000 --- a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38018--1ea059cfb61f71a5bdd22fbcca415abf99d8b71a04bac8a2ae8c301f5b415156.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c29ed5220e --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38016--31b293a229f4bce4083d1eecaddb77c825261364b636c8906de612c79d083085.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7735e2536f --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s370337--fa7cd9f2e96fa42a82ffc772b026856e98a5de0ea659ebd71dda94bf4a02151c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c04f5f2f23 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86150--8552269219cd0f200891020ca19c5aafac72c0dcaff6025fd90ec212343a63ac.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..52fa7371bb --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/anat/sub-milan06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s219349--47d00c5ac78c2a2a81bc86785cca7150c545e8c9312fa486be4c685bb50f5d03.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T2star_softseg.json b/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T2star_softseg.json rename to derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..04ba6f6eb0 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10966--ee5ec15117c9cbe70d53f00de7115487155584fe1c86b964dd2e0e6305a098dc.nii.gz diff --git a/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a2b57fdf79..0000000000 --- a/derivatives/labels_softseg/sub-milan06/dwi/sub-milan06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11004--7a691985a9a142f3202b05e0aedcfb4b25c95a993e572de850625ff7db3f94b9.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.nii.gz deleted file mode 100644 index a563478c59..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352466--ff5b45eef86b822cdd87c40cb6d3adf073bdc983ac037255f502f8b4541bf96b.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.nii.gz deleted file mode 100644 index 2f2b307896..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81177--445968cd43f6af4221688b28643e3a3b7d2f9b4b706f6b409425db4165bff60f.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.nii.gz deleted file mode 100644 index 52503d0684..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180043--3b1f1dbbdb312881b243a0560ad6f78fec770a0d3de1a36688c06ee5547b2f70.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 92802ae0d7..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36819--c4ca2a68d145cba69f386b3900063d1d9d44a5e48973d6c7a8b4cb31cee03b2a.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ed265a44d2 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36826--3e7fbc2b0d5dfaf5772720a3d168b4246f0107f79ca019f91154e54d21d89d94.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 064d51f31f..0000000000 --- a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35646--abfc257af09528b2465b2f745b039bfc92efcb102147e58619b447f988313c5c.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5061890ca5 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35620--62fea2a27d223f520456c921b806feb7614468d1035d3ed45fb96a49c3923519.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f45df40084 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352440--59236ae8dd418d0dd601d146383898075e14d4b22333c7a7dbaa00122be4cbdf.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a6cc26e57e --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81144--ac4a8cc83895288c3c0a7a5c32cd605192e4b8787360b73646145d0fdff02c96.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0135581e8e --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/anat/sub-milan07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180018--48e06854231b70c6184fb1764ffc683f9c75b9c7dd228178c3c9fa767934d412.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T2w_softseg.json b/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/anat/sub-milan05_T2w_softseg.json rename to derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0f0164f5f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9594--8793dfa0f45a9ad731a47c777c483c303944e61e73e5f1145f91f02dc402b586.nii.gz diff --git a/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 54c727f767..0000000000 --- a/derivatives/labels_softseg/sub-milan07/dwi/sub-milan07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9632--32d9dbcfaf97132f12cddef95c454154e577dffe7bc5133ce00e436206c76129.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.nii.gz deleted file mode 100644 index 3af39529e0..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352461--07b9918a9bd307c6d285954f5beadd304d305f3b4fb5b6ae567926f7aeaed5c9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2star_softseg.nii.gz deleted file mode 100644 index eacab84eed..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79037--e1d9451052d7fcc77a0f4508541400e03008ac17f3cb24eaeed86a2da0f0f8c4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2w_softseg.nii.gz deleted file mode 100644 index 498fc49dab..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181879--9b98de2e7cdfffe681fcba73b6f313d961b64d3654957f90e9ff70528f59417f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a75e4ef312..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36875--a3e33b9e63b3bb591ffc88173d9817e01470bc937bf56756969d80eb056e81dc.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e4cd3b0b88 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36815--d518fa6134137369a84e6b8160af77995575e63a1a3e80ede23ddfa9ed3dd06c.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index f2e1189bfc..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:26" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 258b75a1f1..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35888--fc755bdb64dcb097c9664586e1f91bbb2189572bf3f2934589ec0dd027c2b29f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9893ea7825 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35854--0e97c8a0c018346b35b359fb882e657f56fe17006a259fd5c25d9f2da0c93a03.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ee23d2debe --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352433--20b043da0d70d74218f4f3386add3009d69e1bcfdde17ab90fd6e91cf16a5002.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c5e2584ee7 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79000--2bf81a906779c38fa76f4891bb4254f6f98afb042ca36b12723281b8f81d592f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7998ccd614 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s181851--7bdb8666d425b93a2ea431137dd4a70267b8f921ccf71139dec34dba658ec104.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2star_softseg.json b/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2star_softseg.json rename to derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e9ebc76579 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8989--f8863bad8f9da12a7f20d0abbcbcf1d0154fbce3a7ee270966a5de2ec25898cf.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 25d4ece7be..0000000000 --- a/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9029--dadc82b359a67d609e58fc2e7287541274722561c6f1ae68bc32010a369a04a5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T1w_softseg.nii.gz deleted file mode 100644 index 55fe14e70e..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356291--3a26a5da0717953e35b8868137f9ec7993a8332c48bca53b20169cc2347084e2.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2star_softseg.nii.gz deleted file mode 100644 index 361e0ff7bd..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83976--3a51ae7ce7120e4915717d3bad1c5d2c02d98eeabd0c7e93801178fa322f6840.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2w_softseg.nii.gz deleted file mode 100644 index d95508a3b7..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s185945--7641a3bd470f1be56622135bcaca4d5150ad297bd218750ae194ec181821074e.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8f6bdc8479..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39082--0126037e4c78bf43f0462d82308e7dd68d92ec07facbdcd9db8e9b043813e5b4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b63f490665 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39079--6abc3823bee611eda7807b04468d329d05bd90138d703a3fd5cfcf2d9ef402a5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3aaa9d912e..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37853--bbfe9ab8794f5b6b9473e8a0ca1d010d770edf7afc09c5c830993f4cb270b5cf.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..25aa18202d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37851--59ecbe06d8ff6ae0dfb4c23b57d1db8cca35e2e7b478795cbc49a956260d6d0e.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..86812d65fc --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9a25fb278b --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356264--0bf2c79de108d4611497aec47dac88547b26cc8825f042b02a04e121b04936e1.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..293fff526d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83948--f7ca4046d08c315f14234bb71621b273fd7b026a5d41af10be6425ae19d2aebb.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..013f34bbc6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s185920--fd92726ce400c0e4f7ce17eb5fc263f4a37f1c5501580f4f43b796104a269b7a.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniPilot1/anat/sub-mniPilot1_T2w_softseg.json rename to derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae6d3de14d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10340--5edafa289189878b82027eeb63d6be4142e0b6095827a4fef1e91e0e041f1a12.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7ccc11bce1..0000000000 --- a/derivatives/labels_softseg/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10377--9590c4a3ab15e3bb725f85de38a00ec5ac4f0f943e11bbc418838fbd44f7637e.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.nii.gz deleted file mode 100644 index 90d7660d27..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s349654--1c9aa75e912d3cdbc70971e7ca3d420a285df75112818320ccd2c0e8fcdca4be.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.nii.gz deleted file mode 100644 index cc96db3b63..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78767--793751d5dc059e69b71f8e2608fa871e94b67fb50f98499309639ca37cc79a58.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.nii.gz deleted file mode 100644 index 31070c6bfd..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180090--a8d8798aa12b649c57d751d8bec7ddba5b61859463262cafd73a7941013592e6.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index dee5ca05f7..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36764--28abb4935b9062b915bcc7fd8c82f9483963cf58b29d1dbad6a4b92e5c0aa895.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..95858608af --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36746--8f66244e41717497cd63967d233b2a06f7f327041d1e26a7c5e47dd029145863.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a6cc4f287e..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35314--51659bf43f7e9018833a01626aa12b3656db2f12b0f5fae14e016e191e341b14.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..82d5bc3b9b --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35311--07bcd6339bd8e6fd40b82bad8975731f0e063f185948a1a7640d44a4899726c3.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..86812d65fc --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a7e1ad2abc --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s349630--7414d1104a4806ff17589fe1a7d910a5075b32f6e868374b89f25a6a47cbfcb7.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3881a8a3b0 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78740--7a4dabe856940ef39d2ac35098f0f133b902c62fbe64c9ae52934e1e0c4781bf.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db74aee016 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/anat/sub-mniS02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180064--7ccc45f2250ce3dfa7a8403cfdfb47d465fc652445d5b691765e336351f5d631.nii.gz diff --git a/derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d806f04e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9060--bb4f23f2a54e834a54f2874f78bc048074bf2cc530c0f7fa97971213546b5d6d.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c3ed0f1358..0000000000 --- a/derivatives/labels_softseg/sub-mniS02/dwi/sub-mniS02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9097--96d433b3f0e6adb51e4f6d0bf23b318f14fba398339a81f6a947fc4a7939caed.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.nii.gz deleted file mode 100644 index 6aa9e24bea..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s348855--9b50d3925dffebeeefad69c225ccbd9709e7f018409e983e9b7885a2b4fc548f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.nii.gz deleted file mode 100644 index 07584a9c3a..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78395--80d9d25d07a43fb7e0694840bb6789a893015fbd8cb970b799f4ecd5876701ad.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.nii.gz deleted file mode 100644 index 6f8c183c73..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s178314--9c921ef08e2905029d884b7b81490f88f65eee92819d7b47dc32622e73518afe.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5d3600eb17..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36297--17361f8e3b46c63c1df18c5621a8dc8d618fa0e74e5cb5fc17bf7cdce9b62aa8.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cd9454e6d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36228--39e4870c2b8522cb755e3570ada1b39d2ea712866a424daeb674d1778d8f56b5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e65ff46777..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35616--4c223ef83aa21a93f8289ef380709c13c96fb902cacc6527123aea6a5085dfa6.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bdfd21bc04 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35581--6fe83ad115f344b1a8ccb4484616ac7406d48aa9f4da447c07f9d7a2c352e695.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..86812d65fc --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..509cf88894 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s348831--434e7c68bd47318a582b9299a7e7e4b06103663d62ffd3d7b8c16df1f980d1f3.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eeb2a453e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78365--50138b65cf47e30f90b29751a071a90d41a04c7c1c5a929dd7050faa2c3b43fb.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61722b0d91 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/anat/sub-mniS03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s178289--ebf0a1eea9f3c5e8c43626a925816f6574adaab0552acb5bb07df8c485e7ad63.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T1w_softseg.json rename to derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5f3c6569dd --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8687--b64053badeccf68b10c0803fabd842c14bbc717b30694e5dcb9533e3c9e62456.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b8e647ee8a..0000000000 --- a/derivatives/labels_softseg/sub-mniS03/dwi/sub-mniS03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8724--43006d46c54036b6720e1db92afe60046fb467db17a8fbfbe0307bd79d8d3cd4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T1w_softseg.nii.gz deleted file mode 100644 index 98c7286249..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364886--6a97167c0a86be5a357b337f93a4cc0c50677fa8cc184c6f0d8ac32f404e2717.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2star_softseg.nii.gz deleted file mode 100644 index 37d600488c..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84996--062f2e733350e08863da833f496b5cc3f49bd814360aefadf7322deffadefaaa.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2w_softseg.nii.gz deleted file mode 100644 index 4ea74f8d32..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213197--7011ecd7c26643ab0e25d7680c63e126d849942f491e8eda3ce187c0b55092d3.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index de134f74b2..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39652--b7d7459b7eb0ca93c7f65f5ad72dccb1a1a04f2906ebca044e3334a1822ef7db.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d5f34a8fea --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39640--295594e090c941d8eb2befa6d7b55c297cdc1ba550f570704806b294362d127b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 6517718c41..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:27" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index da17c16bbc..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38606--ac2c6bbddbf44c7d3f2573d70bb6267ba77c16d0b4faae7e705a86a0a0564d37.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..47870b4b47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38602--b69ed46af8ea634def988fae914deaa64ad52b6fd05536919b47e3995e387872.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..627cee1e00 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364860--c8e5dfbbd567f4795fe5976af699ab4c4bda5ffd0b7549a5a50f765a90982412.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f4d2f5286 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d323fd2c2c --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84969--a0ebdb99bd95fb239d0a860b4197a2c0bf516e0b0dd811926eefeadf35d56a58.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..df8d690ea4 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213173--2da4061862d7eab4dfef19392337d0cd034ec35fb659d1b4b1b57c964f7a220f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T1w_softseg.json rename to derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27e0b23549 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10646--5d0557d5990ac094cd3b9339a52ece5ae5f79b4b297ebbf888d28310691a1eae.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 05a22c7517..0000000000 --- a/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10683--559667a576c92ab12fc5d316316b4ff0c586c213decc2f75ddcde17016173a5c.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T1w_softseg.nii.gz deleted file mode 100644 index b13c114e90..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352982--7ef314a6864a906767cf8cf74aaa3dcefd49d86d6460c7a4719463408c3ca5d7.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2star_softseg.nii.gz deleted file mode 100644 index 8f56c4a0d7..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80529--ad9d0e10ed52a979aad315de2d181c928d5678e2fb49f34ab26d66479cd27f8b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2w_softseg.nii.gz deleted file mode 100644 index 7cfcb57e82..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197670--e0b73d425679665452a3e967570dca8186649b62418babdf9aab68bf605713db.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9f3179bca2..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37344--cd2786fa2090143de11eeeff2ff6daedac8bcf5a3cc4ae82e95604dea7e7f9a5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..41cc936adf --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37320--ca6506e08d0c4897c5bf297e3c35c62ca379794603eacffe0e6e70d7529befdc.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 920e2698df..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36295--d71421120e8c2d06aa3bd279430b083f6ae01690fdfa9f131fd7b96904e1ad72.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d28fffac9c --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36246--edb7363d7724ba8eb0d0e8119320a447be904f36eb6b7c8395db523386a39ae6.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a66f72ca47 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352957--abd9b19c8c899239dc781ca9d86d85ba40c10c488964ec44db28474361eda162.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f4d2f5286 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e387abe130 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80500--972115e33ea6c1dda4a22b5bc4fab4b4f6e60d4b3f9a032358b299b6b6dbc1d5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8ef9dea5aa --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s197643--e2d94396599531a38689e323feaaebc4cd0a6d2c6493dca9977bc788511fcd9f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2star_softseg.json rename to derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..89f4d9a543 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9270--4c398f3409ec60d5717d1643c175a92f72e4e6272830cd8f6983af5ec031b8f6.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3b6f7fec17..0000000000 --- a/derivatives/labels_softseg/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9307--c0dcd5cac8ee76ab3a07f08fc1b2dba83d0c26efaa2af4ed0cbf56abe5764abc.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.nii.gz deleted file mode 100644 index c6d73d5c04..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357704--dd02a5099251e69dbee7e8cf06795760c20edba9af27ff7e01df8ed6c470c32c.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.nii.gz deleted file mode 100644 index 26c74f84fe..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83420--74bfb43c235ccb9d5dc10f93e3cc1755bf17c2db5ad35876f9871b711d00f1dc.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.nii.gz deleted file mode 100644 index 8a668027c8..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s188034--33ae3e20463cae62ca698830d2ff3c45f1dd4eed288b710c8668ae7f6e660f0e.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 772c962012..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38834--858d57788b35b8420818e3f9656ee0da685cc98270f33fd74fc473d4fc29c487.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dabde78f64 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38777--3d177c3208b73a2a505268a2df5d87f7225f1d964903483505562571f875dc93.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1ed90931f7..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37029--355a5c673c4e6edaca11a1d87539d60d6e6dbb8de50668143e438ab72c52fff9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..68dc31538d --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37015--c5cb69330b42e52348ea3ee4c87750b7824950db31d4c20b7819e9e0120fc492.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4432fcc391 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357679--d3659ea64c73f065ea0467ef9bc304d6e1564c35a6c5e6dc08cef80f97b395f9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f4d2f5286 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b5f431a37a --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83390--b40dddb9ce355c31185f0e22cc077da4cf8f414f3aebe3e11125bde5781232cd.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0868ff2b4c --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/anat/sub-mniS06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s188009--b26cdcacc6d4799797fbb475404d44ef6b131840ff18956a7dcbf19295cea7f4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS04/anat/sub-mniS04_T2w_softseg.json rename to derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3314c9248e --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10016--75b4ce57feddf308516c80ffee649395248b9336de8e04924eae4be85d2ba085.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index acfd0e4adb..0000000000 --- a/derivatives/labels_softseg/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10053--924925da7d0ad2d2b34b4a04e447452dd675de9d9fc27c64e5add99806c2c222.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.nii.gz deleted file mode 100644 index b33c134cf0..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360615--af3a0d838d89b6c1d8a784036257cb047a8b948f18d5df7b495829118df6fc0b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.nii.gz deleted file mode 100644 index 4eb0969661..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84204--c930249cb5a3c1e47adc3c27f4041f6b66a89a984e32d1c98ca08fe729e28eff.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.nii.gz deleted file mode 100644 index 3126fabf5b..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206478--c2821ffff7fa245e88dc85895efa765c83b734ef3ae3002bb9a58c62b710d45b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1af731455a..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39002--4ea094bd9488569a87592baff74b43433275164ca4520586dcf0f59896b9f95b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9227b30122 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38968--4a654a93aa0d7e877d75410a82af4096737dbffef7238a638b10d579e08143e0.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 360260fadb..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38149--f15d2b57e3f34e9eb19171df7d50b9b93de16701566b505993f3151b559d5411.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0a77d6adb --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38120--09814dfe25a14b43ae405522d8fa03d3efd885b2e6e97ad4f04299cfee64cf16.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..45c07694ae --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360589--72de735ce67e0ebe8fa0db4483ba24541b87ff2f7b52a0097eab09e24b0a793d.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f4d2f5286 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9eed72fead --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84173--5188b331793aa887a6881c97ae99185b7c6d1d81c89121c3afa2dc62f592fa58.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..449a8c6c1f --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/anat/sub-mniS07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206452--c906b6ed0cabaeceeeb4e058a171204dfbf59fe0a09b52f56c59dcf8ca1140ca.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c873ab3f6b --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10402--0b4aee62cd58f13906f795d451d91b5764352c78e91269a343cd2035dfea125b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6c5b0806dd..0000000000 --- a/derivatives/labels_softseg/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10439--44957d375027d2baff29c052f81282b7b13542a069e3a738ee02ed9c49b1ad62.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T1w_softseg.nii.gz deleted file mode 100644 index e1eca1248c..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355381--6700fba08fddb5af52c25813904821e056623d45a26b4b4933b718c26acf301c.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2star_softseg.nii.gz deleted file mode 100644 index bd2239e307..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80214--f410d0734773544d443048e2b1423ab68b3a4ed0174afc23be12ed8190d250d9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2w_softseg.nii.gz deleted file mode 100644 index 6d9ee04304..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184660--d51cf72bc606f9e3a6eb10c448e033cb9696441b31064ef105b1fcc8c29f2e82.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e74ad52ef6..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:28" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9a740c8872..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39102--830aae8933218b7f23d030ef16f8db9bd1f668a727e8b2a3cebc70d57c5a77e5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8088bfefa4 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39046--2b9bad5b465c5323f2d3425921220c55ca00fab49030cc394516ee85cb8180e9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 81de6e80e9..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37437--b418a30ce9d675280e11025b4a3c96252c0997094851c2003e414447418789f2.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8307ba2dcf --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37392--1e98875a5ba14a798d5fa8cc3aec6667bf7f7686c8d7c333bca1843a94ea627b.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a37deb86dd --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355355--9f6b5c17d36bb33c26b8b3ca663c05a7c13f00a83635e9f237ea00b91c71df06.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..14ad4e8dc1 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80184--8d34b313553590224211bd787eaac0928a3fcccfc077f33946b8529530fc9ad4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e36f54c4b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184636--b5c8e4c672e56ef863068c34e5c572f63b8d51bd6826dc76b87f76e99de799b5.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T1w_softseg.json b/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T1w_softseg.json rename to derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..542d625259 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9247--ccfa071fbc6ec7f7c244d9961b10d280514e6e301a9c15eb575115bff9d00aa9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 9749341c1e..0000000000 --- a/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9284--51367d8b5e3e3012ccdde2b3dbc9a115c61f44bedfe2388ca9e8f8e01063b039.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T1w_softseg.nii.gz deleted file mode 100644 index 8ffbccfdcc..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357968--dd269d8dc5ef167c1b50a96947b0f0d33560d3efd6504993540b0f5742a5ba6c.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2star_softseg.nii.gz deleted file mode 100644 index 94d6c3ed48..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82327--88d8105f16281a742b2e70e0ab0c4a64e04e7a198dcc780ecc7c39361ec569dc.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2w_softseg.nii.gz deleted file mode 100644 index c5ced9a3d7..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202993--fd9efd38c8601f44a1bfaba5f2dcefb5df2bd8f09f78d9a05799a3ae4a9bf411.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c9ba683b70..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38173--034d7338d0a07f9034143c84cf36587c6f025c1faef3fc1236894eb2cb750111.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b97a854518 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38193--42947a737f11ea882d52b84009b4b7ce48d8717946542307147869b53a1ca554.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 58e56c323c..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36646--39d4b90d30e62f6f6c3eb538972508cb8b41ce0f93ff64e50600525b60261624.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2f66d127c3 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36687--751bcf394d9f91dbb096fdcfe6fcadfde22b9afc7add66011f6e7bdcbf4df95f.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..46453ef0fe --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357943--daff583faae6a236350fe0409fa9a545e6d0d752b03a6e9ac4726612223585c0.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..30ebb29eda --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82294--7be3350ebad651add500040cff11cc5e9411bf153a0e4c772ec43b570a798b5d.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3c8d929d3f --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202971--9fd373f5dfbbd247d8fd1537bd709e49badee679ca16959bcf99cfbe8dab68d9.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2star_softseg.json b/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2star_softseg.json rename to derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2fbd7446bb --- /dev/null +++ b/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9786--1e54e70427765a5ca4b44bb8a442f84f31a471e7fa70c07e3b0e448194cfa868.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 745575b324..0000000000 --- a/derivatives/labels_softseg/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9822--27a87a9a203e80c65f7164adc73c1d989d944db042560498a79ee5b397a9869b.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.nii.gz deleted file mode 100644 index 72588a2573..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s351684--dd6d0975eba84feb5b37b59776cc58757074aafcf96f9d8379183114d9e09895.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.nii.gz deleted file mode 100644 index a86de83c13..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80066--f723cbd037f85881957b38ac7950293ece1db24a2b64ec2f4dfdbad33cba3633.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.nii.gz deleted file mode 100644 index 7f183924f5..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197028--7e889172a39d230d46303a3929277f433e377d2e04910d781d6509263ef7d982.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4a07f1c357..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37146--d3c299f69e1e0442e3c52a657aafd7b5126509fb62874c452b3985301fba4056.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f36523eeea --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37164--d6464b1bcd361359aa1a957a614f8940a4a35dbd390071d8b8be02e220bf3a48.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 184cd40afb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36141--b5daac59582d447cec69b475bcd0c5416f9c7e416c84f387a7657a8761dd1668.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..93e2549702 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36067--bff2cd64965ecae34237547915a7286d12183512d5abb469e00d95ade0b780dc.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5dee5aa9b9 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s351653--ef54fa682492de34a885e3a693b3e70dbed644c6b7357147bb11a30bece643ea.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5e4cb2d957 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80033--e6fcd52751e45a57a3c0d455e3f4074620b69235629791945342a267b3fcbc4b.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..20a6f9dfb8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s196996--ef0b5223b2c69d99c6b94d95d5ad4d23d1e633f36e1cd1e178224c1a66cbd3c8.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_T2w_softseg.json rename to derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb92bdcab5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9422--f37aa26321337f398fcfcef722b7bbd50e75a88efdd05a81066817d37f107f23.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3a8f1e3ea0..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9464--95a8c20c8e39ea67b04a8ea604a6c492c9519b2ae2129c3522390eef84c9e307.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.nii.gz deleted file mode 100644 index 56f47ac7e6..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s351766--25cb4da42b3a7c47ae2c99109ee92279c697e20f54d82226332c9f43cbe3a8f4.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.nii.gz deleted file mode 100644 index e89c478828..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s79833--120b9f87b1a3228159f7676b448f08269f905152611915f09e34cda54258709b.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.nii.gz deleted file mode 100644 index 25c05ee0fc..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180934--56748216b7c96b5865ca15af59d9f9fcccc2b6dcd2de6faaa2d4d4c53829f84e.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5a7d2d87b5..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36870--f689e1935b27248c12d74733ac22f164c94a5281ea81d854fd912f11d5b3a51d.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..758000e378 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36879--fdd077036046bf39b151cfb1fb076edbb0a126e8fdb1317d5c8e854782302e20.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ab145f08f9..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36008--756dee35993b8ea55eea37d62b2987a76de9258ad98d2f88681def30028b228d.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..550fd8a82d --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36019--2f7dab32eab7e350e5c8cdf7fde802cadb1929857bb3fc742e83aabc4dcd4606.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9f314aa333 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s351733--861987c274c6b63c57a6c945f46bef125491ca6246dfbda12efa4d7457f8c7bc.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27edc10fe4 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s79801--d4f5c67ab8c9bf4d30d73106e77bc68c1aca6b122faa3aa17339e0344019424c.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6802bd4413 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180897--164ad20fadcea2865527c08c5f553a7a5499737d67fb88eef25c00cf2fdc22df.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..786c5f5f75 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9212--9e73b68f1b2b8a86f4866e64970d11faf77ac67e781273f64313de2b08c07461.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.json deleted file mode 100644 index ffe50aeddb..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:29" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 66bacdaa67..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9255--a0424d432436531f593241e4a5e168d6ffcc7363ff986848d22d54def24447b9.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T1w_softseg.nii.gz deleted file mode 100644 index 7ce6c45b97..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361361--e3ea34bc1a32fd5b7428ea219bd13488e56aad0dad079fc1972cc8226c9110cc.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2star_softseg.nii.gz deleted file mode 100644 index e4ed565a83..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85376--75aecb06438e11dbf3461a9a64986505f1c07610db6e01f965178f73745acd64.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2w_softseg.nii.gz deleted file mode 100644 index 1329197f60..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s210618--25f33cef5ae34acadbb95bbb3b6e4a8c097cd6cb509badff08f85051223e0571.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 16f358720e..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38400--8e84cebb54a61e8ef4830488a2f95c79869f690bed70c744645875c1cc6d81be.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4302e66420 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38346--094770bbc3fc2706804c0129e10bf422a889e527ecc4448c4845a6d7053e391d.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 333ca821a6..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37692--407c863f918a1fef9df4c67af90951fcf8551b6cc1a2ae9670385e778206b6c9.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..73a6372a80 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37644--60799fb32d7df46687154b6af406066191879bd881d8ab3c3c7f5ec50aea825d.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..214e5d975a --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361332--caab8303c15938a2c53c566c5d9968897476f0f312681e6156d4a063a2f17b1c.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..23098e915b --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85345--1ff7501d359dae8ad62291fd30094d6ca2beadc9a9bc5c7c7148ccde3e09d9f4.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d407aee4c9 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s210582--d00be6ed8024d463a3fdc40baedd493c8e46c4ce0638cf8d540851683b748e28.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T1w_softseg.json b/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T1w_softseg.json rename to derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c3b70c5fef --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10895--407f489193143dc4761281dad0116a90559c4efd307faecc554aa90e36804781.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c0f62dc84e..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10939--cf1a6114ac1f209c1bb861a4be69878104b4d4093a7b2fdbdf460b6c8cdea3e7.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.nii.gz deleted file mode 100644 index 9e1fb9d3a3..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s351658--e6548966d83db10a6616bff6d0b30a7b8d45ef8ec74640d73ddcd0ff467f9e1a.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.nii.gz deleted file mode 100644 index 4f94b92da5..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81839--12478918ff086d1478fadeecc7f1a90ed86cb202842e455bfb6742e00a1dadb3.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.nii.gz deleted file mode 100644 index ba81da5622..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s182921--8e39143d418677dc3a9a71313398f92e4b57e2380f98a8151f7c722dda969c51.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 205abd5e09..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37383--2ec0d0591a0e6e261efca667380984d1eb07de038e94963881bf5be0c40cbdfd.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a97acb35c --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37279--6401858ce63f74904c8e107b12623c2bedf92273609afc429e67eaad5ce2ff33.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6bdb95a0cd..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36904--c3b2d4e5cd99110f65f148ea9861f90edfd056174bb9ab973ddf24e53e4d00c7.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1e0e4ffb7c --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36841--4eb2b84d76f70adc4540dc88ebfe140f33cd40f2f07a338371bd17d5f02009e7.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..54bbbd9736 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s351629--5ad4ef2c325224f53295766b21f991a3c15b59ea5e67d8ebb371b85e52317d82.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ebab6f764 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81806--3cbbc4e69bf68e908f6133daea6372ee501a06fddcac02605772f7fb16d2d504.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4dea6ceccc --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s182890--87b3630c39a310143d8e451c610fa8dff17250bd4844918352db17ec40caad59.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2star_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2star_softseg.json rename to derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3f9b4570f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9770--a5f49587d95fd1ecbc9e3abadf5b693f1cd38a5299566befffcdebc107725f93.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index fda567809e..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9813--d603a1a127bea5e34ee95cf1fcde55e2f80f82ba3a8ea9e3a26fe4d019c3860e.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.nii.gz deleted file mode 100644 index 8b29a47464..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354730--1b3220855f7a053c5e45a1baaa3c2faceb9a909f18c493b022e29082c981803f.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.nii.gz deleted file mode 100644 index 91e867e345..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83496--6b6783772081708f0685565b0adc37303cee2a8c7155b6c90e75624706dc2864.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.nii.gz deleted file mode 100644 index a5bb63f620..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203735--bc3ecb3735f36d0f4e0483c4cb12945a0b11a9b1ced980ac0be5ba3101daec88.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index e69a24eb68..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37711--f886fce1645fa9217efdc8edef539f746f1e0edb2d2130f04ebd2e1f249fe493.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..33256eb1ab --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37638--ac3aeb49de39f056b2878659316407ac8320e0f91cd1faadc62b69ff1f6ffccc.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0735d223f0..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36687--453acb22c0814e56e7cb89a2beeec4f1c01d1e7a95996205c7e4122ec91ee7ea.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..888b84e0dc --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36623--f167c53ca20c6e4ab04fa79a1a7a2cc4fe9f1a5ff62d46cfae57e8ffea386d64.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7124804ddd --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354700--ce688cab5ead494b81395bf9bbd03116aa40fb4dc8cb79d204c62dd4edc5a87a.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ac88c9069e --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83460--880725bd5888ec019e814ce8f11c6d0cb53dad9dc3693a5356fd8334147ab713.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2ce7a9856a --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203709--f184a8fc32356d9333611eb0102ce380f46ce5e983300169229c18e192c3bca7.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2w_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_T2w_softseg.json rename to derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7ac5697613 --- /dev/null +++ b/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10248--158832a53d541a0a1e3b57e97e544669fb7a471345697df362b980a072d41f44.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f76d9536fc..0000000000 --- a/derivatives/labels_softseg/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10290--f4ac993f07b6f373de748a1d069bce7b884656b8e0a9702024d08e5e47ca0427.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.nii.gz deleted file mode 100644 index 6764c51752..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356087--c6418a15530a8488aecfa35d696941b4402769b3cc4a38dc95a6fa3d2e9f4392.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.nii.gz deleted file mode 100644 index f3f2d3c9b2..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81224--d72fd808b6bc451bc6ff629644514c989cb74719bf7f7fed528260be7a39b364.nii.gz diff --git 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b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 48481e7812..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:30" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f7a6c3274a..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37705--da83109076eb9e47733e4bcad9d02f2b88122bed82d52d0df514bb807ce70e7e.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7ee7bd2c28 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37659--63548df62f7059b32a068ab3a5c0b86bbe20c898a8af7c9ed691f05ffd83d6d3.nii.gz diff 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+1 @@ +/annex/objects/SHA256E-s36997--8032ebca2c71360c371b02725d238b5f537b78a8dc36cdd39af6b4b9353669fb.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9066a29a51 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356060--d5ebc44d7327e5ca0d9b8bf3892f4b68991508fca8ac9d47943cc1a1bd902778.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..92946dd9a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81195--db99495caf703e470203496fa1317b3e53aed6edcc702bd8757221aff3478c4d.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ef4359bdd --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183024--91841c38385471590d90be7ba58904ee1bdf7e8754de3a79a40b3762b49bd578.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..35245a4fba --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9504--fc3bc969b11cd4c446633b63f2b70e8efd2f7e62d55534d067e47b1449a2fba8.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d5c1f33079..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9543--6b3dc02b4e848e0f3ec16e29c24e127edf170fd1a863bbb5583f366937d2ef78.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T1w_softseg.nii.gz deleted file mode 100644 index 3e028f3ec3..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364146--fa299f23f0ead6c865a07cacdb1c7ec30384a52e5bf649f28cf8781dd302dc09.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2star_softseg.nii.gz deleted file mode 100644 index f7836968b2..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84399--f753754a70f46d901c47af16ada3386576fc8b562289e988bf270c9979f30939.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2w_softseg.nii.gz deleted file mode 100644 index 5fe1882e13..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213245--44791cad3c12894e927b4ebb65602b9f141a8c22f9204c562152bb138cc14954.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 44e3c5b97b..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39542--fc135f5052401cf8522edbcb14c20e23a65e07d16928f2e6351eacc9f9cca89f.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json 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--git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e32caa1162..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38101--e5801833155d30eb1948c8d97a7c869ce968c15cc14d46ad75742d626b46cce2.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..685b146812 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38091--eeb4cf1c4b57566821e6b9de3e52b91568c0001abd606c88cefe9b389141eb7f.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a8c249e94d --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364117--416f96982bd7684390155052d05637f50100674cf73428cf9199fc84bcf4f257.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cf5cdeaef7 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3ec9055a24 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84371--126f15ef35fa4264aac85424de14058e30b10c18c3c00b3ba31d3d50e4e6316c.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..f5f4093ec6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d3d1a69394 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213215--695aa52b795cd6af84463449470527b6abe7437a3d621f1ba71d1b82b00434d6.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T1w_softseg.json b/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T1w_softseg.json rename to derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a88da50e98 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10494--436f524b2b3ce0b83e613d7c4e9e36f09a8c3e2272759f9d9ac3d871118ca189.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a29de63f3c..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10533--600d16c4880cbea79c00fea696a47ebd351484e41a5a7da1c2cf26127667c618.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T1w_softseg.nii.gz deleted file mode 100644 index b166b370d0..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361685--53e167eae683a52f436df1f659376ea183658c6bbaec370597d4626f7e5943e7.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.json deleted file mode 100644 index ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:31" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.nii.gz deleted file mode 100644 index 49f88afbf5..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85787--ac8a06b0a3f6f6b7e458d3f38424da46bb023df81b3f0f9fff078c9fe0f1e380.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.json deleted file mode 100644 index ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:31" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.nii.gz deleted file mode 100644 index 55c04b9702..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209237--4a9269fe5fc615bbf5606fa0e0eee7f4e89ce3fcc3cc0f938180708115dc7ac7.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:31" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index eae2b8ef6d..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39947--7f2856ad5a54d1af94063ab006b02a9140db45c8e40c841742e63aeb47e41b5d.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..20421e320a --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39967--d9a4218f526e3cabaa98a4a95ef28d2c501a2ed2dde73b674e366bd1a87bec0a.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - 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@@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2310f364af --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37357--2edab6ff66cb2328bbd39a03cbbf98dbc38f2213c62b8f8d50f096bc5f60507e.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4e888980ef --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361658--6ce474de2454b08f629535aaa9595cc30115b3c977c5414e95c722b5786d33ba.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..cf5cdeaef7 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..360c1b5e91 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85756--bd4fb0734d827dd8dc248adb8156d7d1de15a49436403d805cd496de93d92631.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..f5f4093ec6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2fd5725cf3 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209209--db43f8e2a20e577fbb00fee53702a8cbbe3cd14d504927ed65131effda17e31b.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2star_softseg.json b/derivatives/labels_softseg/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2star_softseg.json rename to derivatives/labels_softseg/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..60769e7736 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:31" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 108d1eb9b1..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37813--aa768e8592f6f952185c8de30843bb0f7c8de8e80883a60c174b4a0d6f9b7da4.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dee7ece853 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37738--2c0092d75bf3b688175805fed4dbb394cc941576c52e0628cedb06ee248d0311.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_MTS_softseg.json 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diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2bdcd93326 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2381e5d435 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199102--a31e09c7549e64da7433cc4c39d1636fb101a165e02d6dd5831818798fa85aa9.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2w_softseg.json b/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_T2w_softseg.json rename to derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..af4aeed7d2 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9649--2936b01dcbda16dfe030f66d36f36b2a6bcf961ccf095dde869175e32c955f26.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.json deleted file mode 100644 index ea20796b63..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:31" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 13e5a1950e..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9688--89761881258697b38896686c2dbc522a8d65094b2e3630c75e2dc29716624096.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T1w_softseg.nii.gz deleted file mode 100644 index 187880f2b5..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s349985--142c955e852e39c22d2fc518bab3cc820af7bcaf793e3ae19d29c9930082cce4.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2star_softseg.nii.gz deleted file mode 100644 index 4b6854cfbe..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 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-/annex/objects/SHA256E-s36657--d800d4726e035a1bbbaf2f2f7c756454d4f8f00dd20e4f57f38e490a4f0905b2.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f11b06f016 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36643--9bbefa87c72ac18474b6698b87ffabd606d8e520b82208bbba378f23cd1a4182.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c9cda2c322..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35623--a401bedf91b22a00cf70b3b20e92ee8f8c955792b4133c0b9cd5b9a7d315e583.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- 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b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a4b386fd49 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s349952--17f476d4e4099d86b37c517960725a1c8f126b422f9beb6691cbc0fff6180a73.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d7d971187e --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27feff568e --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78797--0d6f97c6627462ba4101a9ac07f4f696eb07fef01e451e69660d536244af10d1.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3c115eafdb --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..02179ae912 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180478--0280fa089e2123811ce0b8f11e610932e23661fc578b383ad36b505eac17b18d.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T1w_softseg.json b/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T1w_softseg.json rename to derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d9b3081b43 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9070--73b32e5129b57cddf6de0f7c9865df9ef69e0c445c3a6dd9f8af602bf11f1d53.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f1c434a70f..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9109--261ed58a43d02db1b0e779ebc8835ea896d9a87a999812a4234a0eea14d8c745.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.nii.gz deleted file mode 100644 index 80d6ea4eba..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361736--34ee01ae87c91e83648a834bc00f58cb04274a913ae0a4166f73a877d0189d34.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.nii.gz deleted file mode 100644 index 24247bfa78..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85581--2ec07c7e55bd532e453a999d9eeaf1f984409dbb9fbe956d93949ad2efc1ab88.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.nii.gz deleted file mode 100644 index fdedaa56be..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209537--a58012fb084abebecfa350aea9cc2f37cf96c63af915c5ba845cc3060b9e08bc.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1cd02ebfde..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39872--b2b5ce713028d9cfe7827166bf712d40df71ba6cf1443d01ef996741dd6c8dae.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..11b62936e0 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39845--50cf3ff2f79e3a789384a049fac224babca4176237665c788eb84e46c03ae2df.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a8df61538e..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38684--fc9add75c083799f91b0a37bbf90c2509e1de6033c982403f7697399530f0174.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..01e67524c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38607--c91e06d46e659738604453fa62374ef8a7a68372fbc192484610ac90dcb5dd94.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a9a599edf --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361706--299b034b9d3b82e144047cc162e821c3fc647a8f7599254fb7a3003c441f17d6.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d7d971187e --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..362cec297c --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85551--2bde5538c80cd51ebcc79081ab4f20ebc480bcb4f50bf2ca4bf998736d7623ee.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3c115eafdb --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..84474bbdf5 --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209510--512f692aa1526a4c8358ebe477f5d6a1edf83d62484d1ea3da5fe2b445a41c9d.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2star_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2star_softseg.json rename to derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1adebb9c3d --- /dev/null +++ b/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10601--7df4e453196097846c374f0cf94ae336a902a93e21c0500e8d471df8c0300189.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b985d33ceb..0000000000 --- a/derivatives/labels_softseg/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10639--a1df60c41969983419d14b3831cf622a83b8f3f76f27b2613fde2815d9f47c47.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.nii.gz deleted file mode 100644 index 75ae2843b8..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s422521--f2f3b44e3de4ce9425eb39850ea3da39137616d300eb74d0a5b38cfdda16644d.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.nii.gz deleted file mode 100644 index 8deabbf089..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s59856--846d35067389c2a161f614b7ec14f95e5d3386c9101f1acadf16207249cd5794.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.nii.gz deleted file mode 100644 index 10f61d8729..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207511--e75ec0ac8977fa32277cbd114cbbc0fceb3126772cff4fd5be47f152d90dbc79.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9afd3d478e..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40292--af60cdc1910df6298a4c4387c380b5b68e884267eb186a46fa89644adfbd5c11.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..40f239866f --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40255--a4f5e95fbd65690d86bbf5787d5ef5fb4ed66dfaeb9a182b7d35edc2fad2c3fa.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f1d1b5a663..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40479--7811c29fb2c1b82998197844c848098abd043903fe6bbc2e6195e1158b49b395.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5fdd425f1d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40474--12aaf8e2a800338dd0f2571218d1c6cebcef86ede76bc5a5bdfdf5057c75f4f2.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6b32351542 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s422492--d6c914fd226d06e4e58566414e6815c49632f63d62372ee47b9e297998ee13ff.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d7d971187e --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..72d889de15 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59824--b8b5ec7468634c98e2ca8d0f526dd2782be906d9e2068766fd5507b181de7459.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..3c115eafdb --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05cf185e60 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207482--50f12368057d8112115b4686225afd8433360a2cad197b03caf16f740ef35de2.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2w_softseg.json b/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_T2w_softseg.json rename to derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..adba2053bb --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11422--f1699c0e53e3cad6a7dda7c0306b7d29ab4bca099051de5d20c200c95659cbcb.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index de105733fe..0000000000 --- a/derivatives/labels_softseg/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11462--9098fc47934d461b87ab7265133ea278ed8ad93435b409309cbf4406b9ba9f8e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.nii.gz deleted file mode 100644 index a195618365..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s413315--817c8fcf801306ce5fcd1da346fd97fcf63be7760085c221478ca08992408208.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2star_softseg.nii.gz deleted file mode 100644 index 0419101b22..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55388--03cda54f590c4419e443103bb98805f5e6a5216b3c2471e51509f13ba157616c.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2w_softseg.nii.gz deleted file mode 100644 index 7af3bb00cb..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s176124--43e88ac8ec4f2eb23f1c1dd421f65ea86e408525de7e155c07cb8fc77478d2ff.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5790dffae9..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38147--70e2422dd2e329f1012c37982938eb6d57d88714911974a69134216e05b6436b.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..adc3acc718 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38110--589bc9f145028db8b2db00af75da4c3e694b04f02d650f8a3721257b7c690a9e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index aa0f5abf87..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:32" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 315d4a2b8f..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38225--a9aac8518bd539a411c8b4ca8c447567517c9c068baebdb6d100a748b62c59cb.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f18eaf772e --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38243--12185a53cfae1ca91d212965ed31833836c4e1e2693a1ee1157942f5af1d9b49.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..598f6c094d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s413291--e4337c9567d2a74bd8883cc0fd43b831c77758e272778a784f604c71f6a079e2.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..275a6a98ff --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55357--37b45c96e2ca5bb1ea97ff5e053546b7a2ba85bfdf8b1741c3144d2fa05c8b31.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ee9b050609 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s176095--91ac3ca78812e72e4c3fba664f52cc7cc1cc9b9b3491fc13f748c13efba53526.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2star_softseg.json b/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2star_softseg.json rename to derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cd8adaa9ea --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10122--a33d8f55e97d0c2a5036070145b4b8eb77c6f87288d68aada42091e6469b84a8.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b45ed06483..0000000000 --- a/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10162--9d55663e21627653b433ac0a8fd8ff95f93865c2bca40e38f72e11b58061935f.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T1w_softseg.nii.gz deleted file mode 100644 index 8d7ffefdc3..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s429103--3d3b56856d1c12e026547d7c617657bf1e9ef5be0a88c3f24d0045a770d890ca.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2star_softseg.nii.gz deleted file mode 100644 index 18484ea538..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55785--765adbbfc5a95c98b239e04080ff78a9c07a6ee2bb6531ec5e0c241c9337bf4f.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2w_softseg.nii.gz deleted file mode 100644 index a4e0797f2b..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207742--3c60ae84baa2c6115406796ed2c1eead105f7a0280388bdfeec7830498aecafe.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index abe8e4ea64..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39794--09748357ee256ed04de82e799fdd28900edc00d647e34da2d0ca6038e675005e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5ef715b0bc --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39757--96b1d1556e3414d8ce6c8e893075328868586ef89c9c84c52c4078ca6ecc718b.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b084dca7f6..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39768--5c7e8f18854b052e934f2e4c22c7ca69dd2102d4c07b260fc7a3fe2b8c34b688.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b1e4d62acb --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39737--7725ca0b76581ec8ae58b005dd2c71dfe2ba0f9bb36899a76a6c10151fb7f90c.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..32e66457db --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s429073--90cb0ecd8ed4dcee5c08b59158e0060bf645fddecb280cfbe60c2f032c811a57.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..95ab84c370 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55754--4434c546f2294eead2277a03b3c11039ef4870d4260dbf769e0cafa547893f40.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..25ec118437 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207714--c86078e34dfe486c41170b66c0f21026e7294913665e9a77624ab59757b3bb30.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2w_softseg.json b/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil02/anat/sub-nottwil02_T2w_softseg.json rename to derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a77553c3c9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10414--60281d2dcf0426eb3bcde2c9f86f52066de2855a19d0a3a41a23a1dabaa2a153.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 87dc598233..0000000000 --- a/derivatives/labels_softseg/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10454--31895e13b93cf6d5c7c19e434f5d629ddf15736b4c57c2a5400bfabeede292ec.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.nii.gz deleted file mode 100644 index 5eabb151a2..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s426529--5204ca0953e6b73202a17836f82d774a017330e8451475bd64d151753c32b920.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.nii.gz deleted file mode 100644 index a514f18e30..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s64288--6a8085a11f1608edaa5486260a6fa5478544e314ff81cf75268e1f3e60eb6bee.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.nii.gz deleted file mode 100644 index 55b15f29b0..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s217301--1e222b3d5b7d7a5657249481e0e4eea1643c70563adbda808abd302cfa31f2b4.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0f74e45d5a..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s43849--54e2b19198043056aff9fa4a9b253686f3cbbd12e7fa23868a3a93ee21f4a965.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..47c25754fc --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s43812--4e40e9e3f03561be935037674262953e86672aab7940cf57c1a8592cd1fd2e99.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2a3bc82743..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42324--1d0623333f6365050f13a4988cdb66fa4c0d00a9fb473068aa64405101a7d7a0.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..41cf9134d2 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s42290--75e6cb7336706ba783dc34a98d42cff9740939b7480ded9136818142bc897f34.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..acc823012e --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s426501--69e377ff27105f4d7972b2d6eeea60c1126a8154afe00c2107a34e25b8ea78c2.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f566df21a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s64256--e19aab79ed312b116444df8c8ebcd30e2ebd15c62db9b99da1e45d9e49ab8896.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd1d39fb4a --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s217275--350c6b7d3542f5f450f24f90a329795377ac6d363e77793f16d8ba7b68848639.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b35436a033 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12780--8b78081342958c88985d95f306b3026790a76cc212f7d99237823d3fc07256bc.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f757f73d1b..0000000000 --- a/derivatives/labels_softseg/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12820--0f7d1c01630a1a4a2dabb5def73da29049047c09f485a18bd313510d4b4eef81.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.nii.gz deleted file mode 100644 index 88d0f59348..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s420516--0b00a8027afe5c21acabcb6dd0f207588e01f21d486cf74184109f881b6758ad.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.nii.gz deleted file mode 100644 index 689501d94f..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s61565--3cb68e44ffda17a78ab82c12f632e6f9ac4209b665143aa697735be295afd1d7.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.nii.gz deleted file mode 100644 index 2f44dd0c38..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183852--8717e5c4b4095e3b34098ddc1870ebe983cabec38ccdc04ea428d8668ddb6ba6.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 80db7e1deb..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42282--79594c8784836f2befb843fcf6c1e0f028bcc3cbb7bde4866494f746e1bf0895.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0c656b91b --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s42246--45e20b312ce2c1d536fc73324759aef96a7b6098b84c1b73276f4c5e061c881e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 048bc31787..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42254--9106fa03797dcc777383a7cb71eede664f2a92738545328211b14a393bde9122.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f26838efee --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s42196--8829c8d704a2275b86d44e2ed5b97faaa6980f24dbe67c2e4641eb55d82fb95e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2f6fa62341 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s420487--81b811b70857d30d8b662541101ad2921051bc1d25bcd2c8ae7f506c41736e25.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ed7dfa0185 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s61533--78d0c1c0be7f9b4026b5a7c479b4e37967823fd89cd0e219b4c3949545d05727.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d66806df94 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183825--b7582f6607cad2cb06b6ec20fb51989f15d1cede2cf1162397b9e58e8c84399b.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T1w_softseg.json rename to derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..17a22decd6 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12001--7b596b9ec23f805e30ec0d35d6d263cdea056177a5a015eba307b03b31f3ce9b.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6f97f6d8b3..0000000000 --- a/derivatives/labels_softseg/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12041--f35cda67051212348222697152205b9316232d40e5fed4224de34b7d2ef945be.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T1w_softseg.nii.gz deleted file mode 100644 index ecf028314d..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s417972--cfc4a71f042eb9a0adabd4fdede1eb25d15288d6795372c04e7c82e2a2d263cb.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2star_softseg.nii.gz deleted file mode 100644 index 62faa4b0f0..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54599--6dfb8ce4ba1bf44fb0ca02ff7e52201827c06bf1dc1212be22863325ae5986dd.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2w_softseg.nii.gz deleted file mode 100644 index ff13be7c12..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s182106--88fd034396c43dd920d22bcf30f75d29b10b7b827c32b07e6e6c2a04796321cc.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index d916c7b426..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39200--fafcfd02412b1af80d5d7bd54ca950130f7eb2d148fed52d80d5bc30cc609108.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd3bdb22b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39164--ad9cbcd3e2264f98f4427e37b3d5a3b650a02042a8f4020d07c9dfd1f1da0cc7.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 09fb2b06c7..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:33" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 8d85e7ea21..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39068--f4c73cc8ebe994e879dda3bfe18afbaf56b830009a7d821e08ec0f3f7c79e3a6.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..554b698640 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39033--2855c75a8662c2555f15bac56eaa55fd6734bac8db364df2cdedeb325cba54a9.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ca1eeea37d --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s417943--cc7fd344018bbb593ab273c8e1ad143f1c5e77c9acfd154872ab31f54cbc40fc.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2star_label-SC_softseg.nii.gz 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a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a6545e28e9 --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s182079--7dd07d3b049edcb46829b1eadfc181f91463d1366dbf32b685e3d1cad0eeaac6.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T1w_softseg.json b/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T1w_softseg.json rename to derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..303fa12a0b --- /dev/null +++ b/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9820--d6eb4cdcf969f3756a529c6f1d0f82d1decc6a52c16a8ed69e235be6371d58a6.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 8f1a407c50..0000000000 --- a/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9861--78fd52d69de5df59d4987981305028b3c41133849006a5c03532d35635cf6658.nii.gz diff --git 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deleted file mode 100644 index e8db31bf44..0000000000 --- a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220029--e6d41a9ed1bdcfad147a4a2f1d784f0378e02ceb6524b09f6a7121d27c563967.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4bceb7dfe4..0000000000 --- a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38501--698cfedf6e42d3e201e457b5e4acfaad22061c2d0c17a5a8baa56c38f9ab0532.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4729a433c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38513--8ba87fe5267049bb08a9de8290e5f338d9ff7cb4b030cb7fb2210df25230a0c4.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4b6c007780..0000000000 --- a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37460--089028edf0d21172d09826ec97500e9bf7e11b2a481282013e8775e4932d8e31.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e90fd76167 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37410--e16de7b1ff4aa98eb037cb42bafe424c472cdc9a47bdb4487b97a6fc5d2fc427.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..50f8c153e8 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s374578--465a5cacf0a4d197f5d256adf2c964fc7d0db9d6b660787fe7e4ff16da6b2122.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4c6e2ce350 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83254--a1554e88363eeeca3ba6f50bbd55a474fb628848ff3e47d0c94fbd990fd0c076.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f4f1eb5f00 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220005--1d1c706f9b44a86da73d30267f2286be1b17fa9b39c039d691f827489b655126.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2star_softseg.json rename to derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5f1c067b4b --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10130--ff155530c6ace17697d95c29df9cf78221692ba89c594541a96ca3ea0808e7ff.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 847624c2bc..0000000000 --- a/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10164--be25216ac30857dc4d9bd2cc86b13882345e661f00e3fd287d2868f7e208a04e.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.nii.gz deleted file mode 100644 index b50e83cbac..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361506--775ca4a4aee98f145b1bde032c0b909d6e6644d8f0439c256d89b6749712997d.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.nii.gz deleted file mode 100644 index 1fb763fe88..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84047--7201d3dcb6475c4c62bc803f04620accca3092d684aee67c4e5d868a4abca449.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.nii.gz deleted file mode 100644 index 7ff21384cd..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211355--7a470aa74aa00eefdccf3a3ed8f8a2c8b32a2d1f1f30426ef2d45362482b67b2.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 695619cdfd..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38985--e638f127afb8b20c2a37384771a487106b56114687a40616ef085e2caa73bd69.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..572d7b5d25 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38967--b670f157595535e04fb94184db1c9d0307ba6361b5d5c9645df27b8bee0bab84.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6796fa2200..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37765--6f6903e719502cf43bdd7e6692f980ae382c362b1ff06eb957b26f25cf351073.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f3e31f83d0 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37735--60e6a15d5823a96f7f54241084b23a58253c6297a8eb29d93a1bcca4cff806ee.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d2098a000d --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361480--fa31ccdfa102bded2dcbd90231b6388caa5162d6e395a45a1fc6aa2cf2da49d9.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..81f8f0f7bd --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84018--8c1653af36d084a81509e9d191c290641c14b2287b97d78102a8153983733a1b.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1d7190a84 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/anat/sub-nwu02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211332--b8f3112f1cd8c817b08728f8b00821569708f5bd8afbcd786c0f71d860522c7e.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2w_softseg.json b/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil06/anat/sub-nottwil06_T2w_softseg.json rename to derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6241814816 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9939--80e787e5095cc8a006ec1dc50f77bdbb87f0e5d4fd4553a087092e3644deeb65.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5392a8336e..0000000000 --- a/derivatives/labels_softseg/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9974--fd064c3b3071abe88c8e48e1ee81e6ffe6561342c571ebd2934ced247b514c22.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.nii.gz deleted file mode 100644 index 173658228b..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354731--51e7c4e51bd4aeaa393395444e494f541ff6191cbcdceb5c540ceb98e91f2a51.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.nii.gz deleted file mode 100644 index ec59b2ab9c..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80534--ec1e271a3f74ccaf47b775e9a7537fd3e7b8e6017619ccc55bff9566f4e6a0cc.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.nii.gz deleted file mode 100644 index 80b58bfbd1..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s200392--f588f69b75e89f00d2d30af2309e6dd69a6297e7cf9263ba28977e02d1816af1.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index e22e53b9df..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37475--211633b7e0a937d9f983ab9151c44c577318ce223a0147debfc6f80ae182f135.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..80b6785673 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37448--9c71e13c9fb8052c056592e0a01d25ab52b273f8ea6d3e980a7f8c6a43cd41a9.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ac3b7f0bfd..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36275--709ef744273a77fcdb99f9e2723ca52393f0d38b09eaaf8515da87731e4ff87f.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7b1a82e9a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36273--fd4a19c05b6f66ba256fefc6c2b3b1d12820ed4ae8eb931448dcab3a172195a9.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e8e36260f --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354703--4790e2efab1073daa26c43ef65683ffcd02cbbb6e9f02674aa8ccf10f660728f.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f540cd7239 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80505--f7988d2f954b13d409755b6882b2c92aed20e890c1952ce8950aceee465b1fa9.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8b296afa3c --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/anat/sub-nwu03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s200361--bbb9ba896817a026aacd546b1a0133cb281c8223bbdabf4fc6bdafbac129adaf.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..57e89d0a7e --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9059--3246c03b47142ca6f18da31fb67fd6f5b63752d5966d9a589779d7ffa2cdc41c.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 37187608f3..0000000000 --- a/derivatives/labels_softseg/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9092--572c85d86265e33690e58f8a65ca0128e2cc30b4bc73bc329d8348d77f69f199.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.nii.gz deleted file mode 100644 index c7863a7976..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360776--f8d998679d22ac60fac7da8ec6e292939c9f5d621a2c97e31de15c5d6a20f06f.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.nii.gz deleted file mode 100644 index 152a82a0ab..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85866--9d409286b87086e5c31f5bec6b9b65561491fd62f4f61e938e6d0b7e7e5f8308.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.nii.gz deleted file mode 100644 index 6fe41e3c36..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207260--a3cba9744a80c4855cf721257c5558e98de880e1ee95bb83e470f641ae8e92bb.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0dcae907f5..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39422--8ae49b8bf26f296f4886eee0d2635aeacc2c1e4fd9a491c9fc411a4c5ad8c44d.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e7c9f6051a --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39385--449b1d3ad309db2c3d5b7d65c8a8ac5a467b3337300c88ceb58faac59c7166cd.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f552b91f18..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37722--f1e22576740520054b22affc0fe520617fbe17a54cc88f6e224ae384b65db295.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ebebe812f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37712--5079452739eded1c0af84430d71e9bc40789af8c8e2ae9748f474f0e11281d28.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c416f56308 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360753--71a55c8db35651d2b5251626e636283200c35e2bf49e2c0ee0c1379d891633dd.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05bf1f26f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85839--4cd2814bf30a4b17e9562a475ab8d0ad3df7699c49a4dbd17c9c73b9c966037f.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ab4db36b18 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/anat/sub-nwu04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207236--920e2d83598d222e1721e9610d7adb034cf653204aba7de54ac1204a66be4893.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T1w_softseg.json b/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T1w_softseg.json rename to derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6b7ae8a61e --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10712--c595412b28774c9752853affd82375a0a6f8856b6521a23e6b73aa33bbc60f98.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.json deleted file mode 100644 index 8eed774096..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:34" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 92f9cd7b68..0000000000 --- a/derivatives/labels_softseg/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10748--c65ece8347254288adab267264018bf2a12097a0cc4dfa67488616884c7bcda4.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T1w_softseg.nii.gz deleted file mode 100644 index d2af80728e..0000000000 --- a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365203--ca220112b590fbc59a39d84fc88e96e7290c52bffeec4ac1b6cf55f9f3f5107a.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2star_softseg.nii.gz deleted file mode 100644 index 58e82fc25a..0000000000 --- a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86025--8eff3fa4247f4df5956b9bf6b9ac2805c71e065806ebfe0832df9f1cc70dd567.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2w_softseg.nii.gz deleted file mode 100644 index 2f4aade0ab..0000000000 --- a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s215562--3f2df2f8882335a5b68c64784b62e7467d1bf44c9735a67d9f28cd7c94357e5b.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 67aae83166..0000000000 --- a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39918--e735c17b9e464503d6a562be31e10881759a060753512ea921d317e103123582.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..39e77d3d2a --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39972--5e86e1ad2f34d8de9330d2f8ea1ab16f56cc7f52f728dc721f95b67d3aea1bdd.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0f762441fc..0000000000 --- a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37653--26c32e9524ad6e7aa66ab4f07c183e9d4c5d1749d0802cbfedde5576e7b9cd27.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json 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a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e42be99ed3 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..330a5f0bfa --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85999--0c9acbb0bbb9aa588a4f7e93c48eed89e6b3b183d402954cb781f7c4bab02f9d.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f232e90ddb --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s215539--e0642f7c067afe7152fce8e7b932a9b359ef838d0485db55b596699e9bbfcb61.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T1w_softseg.json b/derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T1w_softseg.json rename to derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e0185e2d57 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T1w_softseg.nii.gz deleted file mode 100644 index 14c424ed74..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362523--cceb422476f61ac87bfae8f035177686b896e443d5dd81c809e1032bf547cd98.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.nii.gz deleted file mode 100644 index 71a15a1481..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86423--0d6f255c41d7f25aa5559ac8a219f86553e012924b9b455a247af44100e5669c.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.nii.gz deleted file mode 100644 index 29f0bf9749..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s212202--2a516e1e608c21a1ea8619a82983fa68ea25cbd2e421abbf6013ff62873962d2.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9573e9275c..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39052--6dad46b77c74e4451c123277632fa044c6a048d0bcea918085dd0758709f4e9d.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bbc92e1dcf --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38968--65f038e13a49efdd627d4246e9458840d2fb856b8dc8a3a800fc8eab2a0dc515.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7ad8c64765..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38699--89a06d19007f38301d20c0d7a8e8d1da9c7cfb757f610aeb16b96e8f571c5018.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..38f6df5b33 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38637--1fdd42b38f5fa0a8a1836c1d3c5a3789cd48513ea37559a12a28fcc453de0c50.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e42be99ed3 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4c4c88795e --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s362502--cf7c7f492bf2e44f7d9622859ef87b9653ec48907abc91e28967aa9c62ccbbf5.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..2cf6386eab --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3f0fb2f6b2 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86394--898c66c7704c461288ee7805f4557f583ba4183d21bf692a402f0bde3a124859.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7fb0bb7df8 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/anat/sub-nwu06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212178--4294aa1804554ae10eae29b1a14551decdb922d3720b9ef210f3fd9905e85876.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2star_softseg.json b/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2star_softseg.json rename to derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..08c5e1b2e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10044--e7d09bb5df829dbac24da4ed277f9cc73f7722e68c60a2287eb87b19bd4d57f1.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce9d34b77a..0000000000 --- a/derivatives/labels_softseg/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10080--b1a27e8253bf3221711385051773445ad33f3238de856755d792810c79d1daf1.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.nii.gz deleted file mode 100644 index 708a96ca7c..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362680--fa4b5f22ccc465c980ef571c32fca021ca9c2de1905d6622cd96d8147abe0a98.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.nii.gz deleted file mode 100644 index d9b64fe5bc..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87435--15a93aacb3d1b1b84ac4c380c724c01218b53084ce95bd5e312854cb79341b3a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.nii.gz deleted file mode 100644 index 647bb02169..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s208631--0bcfb9ab3261aec48cbca9532e86b159fe919e7f0afa6b00c2812140a8787489.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0ca7ff4458..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40211--0a341ef47bdd0b41418f1d9f8210b6080f52439fcaf6e6c776d40c2f7830a8c6.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8f99460663 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40102--89319ed0a62966ff6c4c9bd16a1f51b0f754467eba1e6674f1ae75a344857836.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6e101ccd0a..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37432--1e23f5d6c2df01ad4c0a065ad6d8eb6581f5f220f90e3ddc590630b2153de7cf.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9143dc2086 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37375--92508f7542afdb98cc6fe04ce6f3956fd92bee3eabdf61e4702a2a7d920d3a8f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_label-SC_softseg.json 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mode 100644 index 0000000000..7d99018088 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87398--e8059c7015ac89958657a2a8cb8e0dbd841c5b9d7c84bdce76e34d38427ef9f2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ef9ee5566 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s208599--0cd31b8e4bbee0b8a2cef4a94dd745b6166f6a6d94d04e347d7ba2231060df61.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_T2w_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9ad96def08 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11070--f3447af97c5074ac239ffeeb8b4a75e8e380ab4b53abbbf6b59a573b20f82daa.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.json deleted file mode 100644 index 53cac6b3e5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:35" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 366b862072..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11114--025bcb5bc6ef772b51d68ed3f983ef143d748d4db7fb8eb38240b59fd81acd05.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_softseg.nii.gz deleted file mode 100644 index 592b51dd92..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360087--42063930aba41f81a8952d0ef3f6efacc929fe13132620db24f13bcb26a9329c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_softseg.nii.gz deleted file mode 100644 index 7ef4307aa7..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81722--dbcea864a7566246b15162f40de18382e4c5854b5046869b873e279c07214005.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_softseg.nii.gz deleted file mode 100644 index 24c2974f91..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s200716--c13758e7ea653b5ae249229d12036e41a40e563d6b8b7d50e228e18fdb26996c.nii.gz diff --git 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b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..caa7cde180 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81685--14218827c1a4bacbf9cbda13b3256c66766a8d443cfeef0841507590ab84ddf3.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..fd62b29b63 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..15ad0f8671 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s200683--6c67458f1d011a8510aab54629a0ee11a69e659b48bcdc092d27fc418d38e4e0.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T1w_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..206eab2b7f --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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-1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c8ecbbf212..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38565--a172c77e216b56639a39da262d18986482356652ebb10084b9fe218ba2e4faad.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 07cd403dbe..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib04/dwi/sub-oxfordFmrib04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10929--b65da2bcc662ac33656366a6f9493b7f9e4d3c3ae09175cf1a0ffef2579ab20c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine 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of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_softseg.nii.gz deleted file mode 100644 index 530dcb1cf8..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84548--b9e8b38ce39b29f58fd63ad16f2103e500fa02e89e5166042dd1c41a9bfcf91e.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git 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a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 49c32189a5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38375--f4c34a28c1b35883d41f4d7516179c39bc416be58e2cdc51a419dfd0a5ab88cf.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new 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file mode 100644 index 0000000000..407b1362e4 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84514--c5f0b0c8a125d31dbefe20a2a5327d9ee5f5922c287584960503ad0c2da046ce.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..fd62b29b63 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abde5257ae --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209644--18df731b08c97ef515675f63d26e7586aaf02a641c6a722d7283490f7dd0b954.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2star_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8a370435bb --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10445--1187ba6753936417668c651b159a2b42678ae5448b3e64945c34183f2e4a779b.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 33fec1af68..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10490--3d321b2ed362eed2d128925ff6910549e4431f6b77241b21f94c98954c531f57.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.nii.gz deleted file mode 100644 index 6ddb4dd94a..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360673--752094f7642f705670d0c25fe3354348b25d8fb7f10dd9cc6494de96e11307d2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.nii.gz deleted file mode 100644 index 116c074b44..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83249--7606df65ec0f7350b40166ec3ae4329ed586d4b8c904031c9ab0c3cccc8b86c0.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.nii.gz deleted file mode 100644 index 0ab54d3049..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s208024--33536fb67a070d5f815429b5cff295cecddbda63114223675ad79d490298209f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git 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"2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b4edee4cef --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39142--1761f40636f3b4dfe2c358ad68e0b7818684603673b542cb4287651b88ea98c5.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d34614c8da..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37906--9389cba253ab321b1d4c5a23a052e32215e9ecd52fd50c142e763d596ae9be04.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7f0fc82e3a --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37880--00a4ec676ff76c1ff98815b7cc69f2ac63c4bd8b0ed6c327c4aef0a39ba9b6fe.nii.gz diff --git 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file mode 100644 index 0000000000..4387579a77 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83216--f590696d25991694a587f180dccf971708c7b974827343dd8330ab9c7b92c00c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..fd62b29b63 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c4115130ef --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207994--0dbd8ad24e5a5df266591409567e13917eda590d82bf2701a5d5ede5e1ccdeda.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_T2w_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..90657a3915 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10207--65e14e61821c32eda99e60b31c08b205389b67025268ce03a901b02d9772c0e9.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index efc5822b54..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10251--803edcbb3daecbe5000068c0c192228339622f80bb2f28d9b59ab045718e20fc.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.nii.gz deleted file mode 100644 index c8de46d200..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s358257--d4b5f5c075e35b9fe1afd215dc85dde65c118b707f81a2ced1c3bd50f524d02f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.nii.gz deleted file mode 100644 index caa90098c0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85181--b8cbf45c07c5c74084e6ae49f02729e30581d44bfa08d6c5855c1b19ca54f0b3.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.nii.gz deleted file mode 100644 index dee415db97..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s189582--b356c13676b6147a563e1b388860cfbbaf8928684ce3d774bb19fe2926c7448e.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index da913990c7..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38304--6fcffd9f250e1ca565aa9ecd6cf816e9decbcbfcb1eb8bf9483d658f938f106b.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb0de566c5 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38266--e05d2bb1305b5df597078d09cc682cc28139a2139d6852d546bf1196e564867c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 567dc5d0bf..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37813--d20965a4c204db9c0cc7dbb1a8bf2cc6f217235283d2e7d02d88f9b21f096723.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fb74d84cd1 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37846--0858d4fb86bddf6c28648ee295e472e7713d9ebfe13afdbe090cb54209f6c361.nii.gz diff --git 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file mode 100644 index 0000000000..3a0bb6c349 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85144--8ea31b50973334b15cdc8ffbb98198ebb2403c6abbe8f61aa61f7644b7cb56fc.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..fd62b29b63 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d79690841c --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s189550--a8dd045480165f18b0f77c4ed5854e8cb6d5566943f5e552b4ad4a3143fb0727.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1434bceb67 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10889--313bf5c0dc638385ff0b005f150b2cbe02c437bca90f0b920799521038d7feac.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.json deleted file mode 100644 index e36db71caa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:36" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e6dfb3304b..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10932--2e014348f784346a82f045c8c454e04faab0c39a02e976fa7c8ad3a5e1529526.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_softseg.nii.gz deleted file mode 100644 index 5716982fa8..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s358795--41d25a60943e2996fc010426a4190e3a508b95d046cc9a7cfc3f9cabb3e737c2.nii.gz diff --git 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--git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..06b317e7ab --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38884--8df59e34832886d34ae6d4643da84cb833657041061e07320aa135a577114a21.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 57db66981e..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38162--bd3f17f168ee0582b23d6ff93a9b243247bd933a7bafa7abdbe8ca1b4764adc0.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2f48331427 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s358763--fc84ef862e1843b1e606cda2cd642b31868019a9267403e5230b63cb489fd4d2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0dd7217acd --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2star_label-SC_softseg.nii.gz 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end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..09f23a3057 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206407--3426adc32aa8a048b55d2d202d1825760996a77c59daa8396554f9b7714d1d0e.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T1w_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1494dd98a1 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10215--45e2fad5c3d0c2168729b1bdfb7cb956606e85a536af2f571b2f59123494efe5.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index bbf043d7ba..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10259--a040b7549254f26305008436be332e47e4410f08a1bbd1ef2d34883ff511a29f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_softseg.nii.gz deleted file mode 100644 index ff6212e461..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s367273--9db2e8dd5c29de4a2fa379ad9be078fb9f02378ffeb094d5dc95e3b86bc7eafa.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_softseg.nii.gz deleted file mode 100644 index e372d3133b..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s87594--00fccaea66668d81f1991877b573a12d95b90d25c0f021b52cabd7f1682b96bf.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_softseg.nii.gz deleted file mode 100644 index 69ddb3a01d..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213753--5126db960ad483d15450e7e75b2391cc53c3068914f52b417fd5bdb4e7d2c6f1.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine 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b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5db501f486 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40531--56495d484e55b7a7f17962f959a3c168b547f0c98f90baeaf92b8467aea754b8.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 855836c66c..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40166--503cbbdb3193d480171612357c5d5a6c25e301f04fc9248cd6a7283f312def31.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b65e820fdf --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40145--f45f555881d393cde726f3e7d06dbfbe41f85373080a059e4623a243e3b4a2e5.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..64410d5987 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6ff2e37de5 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s367239--ed40d5cd8bcaaa66543247886c1243fb4bfd5b3b68d28919d4de1ac8a943dd06.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0dd7217acd --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..80b0c813ca --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s87558--11672fe4bbe52180fe7091fbf0c72ccdc0270fa49dda08f8e853a7653bbde7b1.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..1bd35c6265 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b99dc6f98d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213719--7138834444fd4b62bdea7a31afcbc9f381cb45c516703b821c4c9ba234d2adbd.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2star_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..62fddff139 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11563--b9ac06bed06edc262fa8ba19f795632c7f16ab3a39fbc0245ff1ac792649c165.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b0609595d5..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11608--80bd5fb728451e490c88f8221e40ebe2a7936ba06695dfcab2e49590e4e8594e.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.nii.gz deleted file mode 100644 index 241ab296a8..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364195--0392c95aa21297052501b3fa00384ad7a6a08ab49520239c3acda293edaf8b65.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.nii.gz deleted file mode 100644 index 8b6e8b1ee6..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85962--d6ddb2ec75b0637ac92d561387818ab16e57e4b07a3b8d02908eb7e124c91df6.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.nii.gz deleted file mode 100644 index 7b7a14ed62..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s215009--ddfe5af4b0e522d0a7692be08e923f8698bcc3d1f622ea603db4bf91e3fe3b28.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 32e98d9942..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40593--3b2898de419a696a2dbbd37d91652ddb3c0b9987a3e904b3bd337a8f356df55f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5bf691c941 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40511--ff25b3cf991bb03275c5f9ff7efed49ee6f38ae42ba3d5c161c2ce06402275b9.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2c6e57b43a..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39999--2e5619cd8b6bb639d30206f83556f4eddddfeff41d67f9a3ab8d65cf8ecbab4a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abb5c3a8dd --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39911--a80ccc25191f58462694a079b13575379767f8c3a71b5afba8a52b1a8d83046c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..64410d5987 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..70dcd3f5c7 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364162--f8ab2eb7eb7a4d5645a330ef890c10cea97874bb5b823f03cdc5ba0da0c15849.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0dd7217acd --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0926396290 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85928--94e7cef64e991147091162fa75e5958df608fef97748e0c4430681e6814cda19.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..1bd35c6265 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ec79d39ebf --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s214976--2bfc7a71140e14ab416ff9f5f53e6af9bbd118e4fa1df40280d3764d4cad4c28.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_T2w_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..13fa469313 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11149--0c9ba2c760cdfa5be45a82a344af45c095832b19dca3524599dd8a263c880ee6.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7ef5eb9bb0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11193--2bf49eb48a08f2ee2e43a14ca6439acfe54cf5cf3855ee78e641e6e173cde943.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.nii.gz deleted file mode 100644 index 4133b61700..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352312--43e5266f51523f009a5a9b531322c347e407d9e27948c51f0a776a6722dce40c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.nii.gz deleted file mode 100644 index 18e2871185..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82023--4b1ffd4bc9526aae362fa62a8d8ef82adb3db8625c7e15a758395c7a5035bb55.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.nii.gz deleted file mode 100644 index d77b01c379..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183569--3888a0c0dd8b84dd293a7a728b6aa62bf7b4b88a4cb2d6937927fcd2eac243a9.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 883558b789..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37481--10a76b211ffeadb7df19f3b72fad16f6dea4b21f0543c22946fb9a7a30022928.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6449a422c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37440--028e44f5a087efc08e61a132b3409741a75396833c531095736bb4bb5b5751c3.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c300b0ee02..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36895--d1defea3d3daca2b09655bea583d92beb67737011e43af5047da50048dfb2dc2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..82b5743336 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36866--80f4d8ca6bd2d26e7dc12019a722d02b80091928dcb90eb8cf17b037d186eb50.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..64410d5987 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f9f2406ab7 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352280--2fbaf8de52c3040a47b1ae4bdb9449eba7b9b1794ef4b5a84d5b864703dab639.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0dd7217acd --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..026cd4a39d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81988--0f96fd41ebd3e6562df8f3a1debc2bae7fb83cee1b54af16f3b939bc189c5a65.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..1bd35c6265 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1686a0d01e --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183540--7a997fc610ee98183926b0924093ec496b25021e8622ed5c7ea4651aabb05036.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1827998075 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9559--d7df967f06d557c5321629e591367eed07141207f71b929c61308a8d458d5bff.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.json deleted file mode 100644 index a3e17bade0..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:37" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f6e36c4a0f..0000000000 --- a/derivatives/labels_softseg/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9603--b1844071b86d31fbdb1b104e979010cefd1f54d6120b93ba8c7d6b6db039f488.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_softseg.nii.gz deleted file mode 100644 index 994240df6d..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356541--908148b3b69771a823ef8ae7a2a23152a0168f143878be48d9aa3485379c70de.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_softseg.nii.gz deleted file mode 100644 index 0474781e3e..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80882--70225247550a38546c3b919cd6b18474ff5c25d6d1ad3d9ffcb6b6acd8a6800d.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_softseg.nii.gz deleted file mode 100644 index d5c5affda8..0000000000 --- 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a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37764--956ad0aa513994731ce85fe6c4c17dcc76626987ead7d22e3a1d365ca4f4b52b.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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"2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9a3f7d89d5 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36986--ce4d2ce234a9a068842dbc3ee95e5e6df7f124954689d2c27922d6849f6c7200.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a66cc48c8 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356507--668c2bf966ca5354e3e8d792d1ca6d257f9b024b4956a2d95b8d9187ba804f95.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5591a8fb43 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s185246--01c144ababa8461a429af1571a14e1aedd5d2eaa8785b7ad421055ddb3cb3017.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T1w_softseg.json rename to derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4c70429d78 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9389--3a0c14dfc4feb805c13afbe176f620fd8fe7a1ac8014c13b34537c51a83cc2a4.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index cf2581f13c..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9432--3a3afdc23f3fd57a15bc8f1432b4e17d6920bcc33324c3911bd28586176a8238.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_softseg.nii.gz deleted file mode 100644 index a3d25ea777..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359624--88b8778ee5e35bcc7d7856a3a896d56d71ad4e390be713f9da2085a1881222ff.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_softseg.nii.gz deleted file mode 100644 index 3a192e37da..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84897--47ff445e8b2e48f2df3464651dc39ad0e52acf7d69c20e9a4ec492ee0f7d7094.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.nii.gz deleted file mode 100644 index 77fab47f98..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206018--83fe9a4ac42ec2095cb5d92c600b5dea164bacefbc016b3bf26c6b865eecb5c3.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5ffda9bc48..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38569--f08a5661b9318db9e3e74630835a1e37583674772b6e3732b9d79bd3764e7094.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ef6e474395..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37382--750d2fbdfc2092512b9d9021af0d75cb0408797002377d272b6928550df8eb78.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.nii.gz deleted file mode 100644 index d91474ef6b..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352464--e4fa54a1135f97dc0d959ca3e4ed2382c6d5aa1e196f66ff9afdb43f179725f7.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.nii.gz deleted file mode 100644 index 9300005c43..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80486--79b59bffaa7cb44a9be1546796f483366be82fc45c574facb0c5be22633116f2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.nii.gz deleted file mode 100644 index 36fd14bea3..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183744--d17e3c29f0d2f136e2f630184c4a560a308c9d450884cf7505df81450c621c8c.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8c86fe28d2..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37908--a63c84f87e62a4d02e12846358ed863cae56c2e64415e397b5d4402480183093.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9f9c1f0b6d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37870--0bd99555e3027ac64172e248c92e44d1cb0b88da5bba18ab127d33c7f7a611fa.nii.gz diff --git 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a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..978acde2ac --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37429--df6f553ec1504867c064b8c990e5bd0b7dfa54e5616237a8cbd7060355cc7cbf.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e529aa0c0d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352432--90f4168017fee59b506b59e1cb0ad808c41003218249c480c4063f565f0a56bc.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9bb4fab5e1 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80454--48a6ed6084e483503fb266b4b074e85583ce0803666b058d4dfdce338f23f15a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..41fd6be189 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f3e038f83f --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183714--068bddb0157d008d2b5c5c34aa7f53d8f1104c964e8294d70de5f0d09fa50e0f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2star_softseg.json rename to derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..71ae292342 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9456--dd1c6b5e0e5e609f02f96c47856b156dbf9107aa5d175725649c27e0ecfa7b93.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5f8c4de33b..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9499--4c3d4c0ac8d17afcee92aa171f9510d4eb240165b828f0a44968777dd228c22d.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.nii.gz deleted file mode 100644 index 53442a7e1c..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353808--2042c1c7bf296de789fe23310c08c4c105e9a343d070b3d75c6ee476a4aabc78.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.nii.gz deleted file mode 100644 index 04f6ebc9ee..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81017--6e8dd07431615356d9a7d0f20c1b7e46baaf51baee8e4ea6930a58a1bc129db2.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.nii.gz deleted file mode 100644 index fda849b4af..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181498--4885e1232bd32e402bc0ebb82ec3de0e97f0adb9e3d069d52f9220a6a1e3ed9a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 39b31d15b3..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37384--7185af5df2d0d59ca5adc3e96b8ac4d61fd4f47ed4fcd6446dd5183c4c6a3add.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..442f82df11 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37392--d904fff75f033dad06f5c7eaed2147217c61510d6f0a6fcefa1aa519d6a37e7f.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e55f68ebec..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36649--7ba9a20a22a0a9a6ae20d70d56db77fd659230ec519e0e1f6fee0bb6dda0635a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0cd10c80d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36649--202b849a89f26195c861da79d41d498235907318bb3797e681f3967cb7df7d49.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4309093fb2 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353780--c71118e972a1e6fb51183e079c85f2ac79035efd318bbf5d4ef8dd37ad0b11d9.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61fd089bd0 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80983--89f750e5c6b5038ddea660975476a9955f22404c5ddbe6d435d943b0e3ca52f8.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..41fd6be189 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..59b8cff31b --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s181469--8fa7e24d0808b3739dc57d19182fe4b4b361994a108be5047be42469d68680bb.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba01/anat/sub-oxfordOhba01_T2w_softseg.json rename to derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..55843a786f --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9406--dcaaf89db49854c58ca3baddb52e033e413db9139a20251d26576908d554eac0.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 712e6702b9..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9449--e541100a2828a18595569aedc07a857f830526ada021c77747a4774d81cdc511.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.nii.gz deleted file mode 100644 index 026770663e..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s366368--4c82522b76232d72d2df286bfd823da24765a482e8c16774ff5a717435379862.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.nii.gz deleted file mode 100644 index 6bc4d03dfa..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s88628--e325bdb38bcce91ec6da45a0f9fd0ba874301522eea005f2d13cbe63e3dc1d8a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_softseg.nii.gz deleted file mode 100644 index 0440151f5b..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s218234--d8926557c4aa5b3914d52448e2730c77387b7b2392416a91731ffc67d85a0d50.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 808952e3bd..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40348--c7cc5408125d4925f2dc634a94daaa9bfd46b0fe3ce1d2960e2218ab2e1ba525.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f1634c9cb5 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40304--8e60f61b14eaf080df18fa3321d04bead77a53c85da3e4dc1a2c9d26f5d0ad10.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 90c2d5f493..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:38" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2564aa341e..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s41325--b8b896aacb2d8823e4378d990f97db151053dbd22f199ef31dc1cf494c1134ad.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae1b02e527 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s41312--766f5632322ddd0320eecb5f4fb7c25a50bacf784b8589d28bf4291460e85055.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..04a9abd0c4 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s366340--00323227f24fe3473caaea20bfde7bcdcb47fe5f66e740ddbece55621332cb17.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f22492f6f1 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88594--658cc06af2eeae62f666947e87ff1d054eeabddf1c8cd49256e26699a8f41d65.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9a8db7f6e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s218202--43e9a07ac52a574ad4ca83f13971ee32ead666228543389f529855c878134703.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_softseg.json b/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba05/anat/sub-oxfordOhba05_T2w_softseg.json rename to derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3166aa7806 --- /dev/null +++ b/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11328--ebf3e13246fc407da50c5eb20a16893fd13f5ddb28b02c80e06454ebf2320a7b.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1a172dd338..0000000000 --- a/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11372--630764a0e5d05531a85519bed04ad68772b881843343eb50aa9973126bb6cfb8.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T1w_softseg.nii.gz deleted file mode 100644 index a22524a034..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368093--82b84fdc809405a151f427620431c81b3e25e252c942dfbcefc360380df91c34.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2star_softseg.nii.gz deleted file mode 100644 index ddd5d84edd..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84689--7bdcc6111810ad6ab43d4d869eb526c1adebfb1e8bbb1b5e41eefe7a584b19f0.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2w_softseg.nii.gz deleted file mode 100644 index a12db6797f..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213950--97b728f6422ac5624ae9c75f2b28fa2c0389e9a2089286f6a90e10482c82f347.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3ef66db382..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39395--aad4099c8c37cd8e7bd06c5035d4af8ae031523c80c4ab4215c0f3c05cf59664.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..197fd46b5c --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39326--b3e64262b1f49dbb857fddf491dbf31fa416221b2dfef9183230d4c1ad510e01.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 58c9fcd905..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38785--57a9eb490f766d71421ad8820461e9f5fd0ed4d17db13424a660dacd789a320c.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5c65800e49 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38765--d28464ef204992dfa0d2c50b4d0cba50f592fc804f07ea1bb70bc889c9a0bc50.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e83c6ec028 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368066--9e6118809c24605c324e6911c662cb2c33e5b4c700fc48fd442fb030917fa6b3.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..034c07f68f --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84659--92bb06a3041e8b0cac1869186251852945c8d9d901e804f154b6dfea3643e435.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fe45c5878a --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213926--b3636aaec2768d205bff69602f3656409383983aaba059cab88ba519a92d059a.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a1974d4bd --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10544--fe995af51426b7a80a86dcd80d1a200fab5079974bb5f11a7f7873e4c0719836.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e83e3b730a..0000000000 --- a/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10582--c2786f5841a337412577a835609b08a520c7e4d695b033e9888c7273da5ad37a.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T1w_softseg.nii.gz deleted file mode 100644 index d9f5f30b90..0000000000 --- a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364270--294cba908b252b71489db55e7cfadeef3d22abd51fb1fb432c43ea7cb200e081.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T2star_softseg.nii.gz deleted file mode 100644 index 4d0b937fbf..0000000000 --- a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84802--01e2959a1b34b31b165d0b816a804419bbb55e157c5321abb2b87c2c250946a8.nii.gz diff --git 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b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a998dde50d..0000000000 --- a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38954--26ae3957e731f5ce8d3a7bafacfc00d622f8e9d950239c2ad0ea1bd17a2a44f5.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ab075fbbdc --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38964--cfad3e4a8e4ac4a4c37e18d8036c8e65c10d1ebe2b9d39241eb76ae3917d5cd7.nii.gz diff --git 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b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364244--55aabf0bb2d4bfa79a9578a1cb808667eb6270f75505a85737f4972c35b5f866.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5bc08991c9 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84773--f4df9a50f8a62a84027533a820ddfce1a4a6d2dbd73255a8698aaa4671776e0f.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e851f036d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211417--14049ad096f30f72d56b27f298c00692ebe29fd7df087368cdc422bca9e8bee9.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T1w_softseg.json b/derivatives/labels_softseg/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T1w_softseg.json rename to derivatives/labels_softseg/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_label-SC_softseg.nii.gz 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b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37927--2a255966bfe06a0230a69204aecd60eb5f80be36b70bddfa8c2f5ec6353ea0e9.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T1w_label-SC_softseg.nii.gz new 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..766b106f01 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia03/anat/sub-pavia03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s208213--f62547123c1c2a8b1d22ee7205f40db3affc1b698dc61045b06aee61e0d55ac9.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2star_softseg.json b/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2star_softseg.json rename to derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3bad95854d --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10171--10d38ab869582f0e6af77575fc970dd35abca6cc3e4d4958a78615b74859b40a.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f1b62fc409..0000000000 --- a/derivatives/labels_softseg/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10209--7340376046d2f293ac4dacf504737f05f03da40f552df2b02c218357858af04e.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.nii.gz deleted file mode 100644 index b24c874673..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355936--13f45faa1836f5f6b8c3562de4483d25258eadcba022cf2ca1cc4bd2f4a1d80b.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.nii.gz deleted file mode 100644 index 5065f70187..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81447--5ded64ed295ae5b3d1e17bddbe74f9d3ffcba185bfbde7177c30ed4bd9b5da5a.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.nii.gz deleted file mode 100644 index ed2d378215..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37896--5bc382fab00b2222d3f880a6ccd06d32523157e7a7f8bf07553be5d3913622e3.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 164fb7c732..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36658--7c20b8f69bef775df0d88d2f17427e630b40ee92eb98fd784e3285dce30baaf2.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz 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a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fe4585f019 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355910--556d9ad0f28e8e770a39cac9a6332474506edb4c4e3bc70cf07bf7f5b6433765.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..476770533d --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81418--3791419e33d837f85bc216d128b991c1cac6a1d693385c42a24081bfe5562dee.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7c114cf2c9 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/anat/sub-pavia04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184908--e56a9fc9ddbce37b69aa50c8ba1d2ad5135300e88decdb932b5b8904eb0b9ee0.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2w_softseg.json b/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_T2w_softseg.json rename to derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..86a533d068 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9361--e5594747731937c12cf1cacc587dc64ef92f9b8e6edf1ba86dec04238f161b25.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 980ed663f0..0000000000 --- a/derivatives/labels_softseg/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9399--44cfefd38e42243b6a6c1da312e1909cc90f062dc8f1b674466fc90a96a8c2d1.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.nii.gz deleted file mode 100644 index 04fd0db7a1..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s370692--a7934f452480547181080ed5f877da0aec5344d61ce8c4f6be61307d9ce4ccbf.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2star_softseg.nii.gz deleted file mode 100644 index 6feb2ab2c7..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86049--b59fc6ab4254e72dc8c96d16127c7f598ba67fb6bf2bf45d99ddb235c33450c1.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2w_softseg.nii.gz deleted file mode 100644 index 783f423414..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220274--02287ba8f1138af96efadd4e47e3e140713a77f04a49b6b68256f495d9fe7a03.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8b250f8de0..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40203--dc08d961fe7fe26ca3110910d64bfaf92af5b19ccbaad479d59e841d05af1169.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..43d94c35f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40161--e1636b0c8b29cffa188eba0234b27d19d9dd31271682227b2a590796ef1ebe9f.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7b61e22a16..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:39" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index fb41e3740e..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39054--4d4999acf21798c352cbe16d4d8afa57d5195730353439a693197b103cfd779e.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b5ece09729 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39040--dcd43339b4f09627c6ed1d07932bbfba2d81316221f694681d418100f75a4052.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c7d69c5d62 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s370667--d21f45bf7f95edb4315dae8b5c421619409b9d390c095a603d00676227e6687b.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3103ba4a9b --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86023--3bc9b3f1df52cc9b702a89c3d8b6e1502298cf00e54a91f4bc2c688944b796de.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9d19030d9a --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..edc7042030 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220248--7c69233b3e2b0d39c5bb4fe40bc72be8429866cefd459c54320a5001804f7bab.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2star_softseg.json b/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2star_softseg.json rename to derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..234b51ee4f --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10806--a9ee9e474a5eebc42640e75f27dd2cfee9b65d83cc7b6876c24466b761b1bd0f.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 64185ed012..0000000000 --- a/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10844--82df1f75151704ac0aa65e98052221bda95b5449801562539130eb3f438a81e8.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T1w_softseg.nii.gz deleted file mode 100644 index 054140f7c1..0000000000 --- a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365429--c1019c1920e1845167a7c949e02d52a160f6d4ae0d38df8a2850a6a9a11869e1.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T2star_softseg.nii.gz deleted file mode 100644 index 01f389391d..0000000000 --- a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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-/annex/objects/SHA256E-s39221--4cae9c9c082b6e5adbeaab59f3cc54f53bce5e0eac46aa00d0dd814cf6011d1c.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b78bea31c2 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39203--ae83357e106976b9b1f8c8d5c65d6691c104956272261549ad060d26a0a04d91.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d15926b68e..0000000000 --- a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37148--71daca6afe1d5a99683512caeba5f5ecc2f5122a179ce403ce52c7c818f2f00d.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6e2dfada6b --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37107--10fe60586bd66292866059cae3ed12ba8bee89bef701849414f1ec26adfb3820.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..72908b26ad --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365400--0ca698726eb7d0e74921411e2c0486b942b38b7dd69bf4b174de3ec234158ff2.nii.gz diff --git 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b/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213017--4331dba6f51d1c3304a59257ac10621ab1cf2b186bfac81a04c878c73f4300f6.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2w_softseg.json b/derivatives/labels_softseg/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia05/anat/sub-pavia05_T2w_softseg.json rename to derivatives/labels_softseg/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c60e35e361 --- /dev/null +++ b/derivatives/labels_softseg/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s10511--a9b9cc720f560ba887bcb15c9c2a91b19c4fc3fb96b80e08de1d3875971a51c6.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.nii.gz deleted file mode 100644 index 890b4c2604..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419134--b5ea0de87d9591ee40b5838ec93ee033ef1ef40728f8f0d50581f461edbcc0b9.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.nii.gz deleted file mode 100644 index ab3c864b2d..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84149--5b798e50bafef102d5e8a6e164fa8faff135451ae150e110df6c92cf1a37bc5b.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.nii.gz deleted file mode 100644 index dc4ac23c47..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199890--1db2c355574a0c8a54667357ed4ac8b2eabd0214159332bff1a32be9b6a13e61.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 606cbd7173..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51620--e4e11498528426b014f7261d28064de494ae5f6d688efec82a2e7fbfdf2fca65.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fc0d040fc8 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51632--2732f2ebc08c4b0f3d5cb4805063f6092f2a52b524a88b243113a6232923035a.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ce93a26a24..0000000000 --- a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s50900--6b93934128002d9ac044af0d6d236a8d1d44de8f5fdbf306808dc13c9654c1f8.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..555138ffcf --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50853--9cbe97e7515943295cf7579fd722ec9467603abcd4fd6da47a72f2f587c80838.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..43c6a38eb0 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419109--57f5d68a538003c4f762df0ff0a155fd100d3fbd54a5da2754502221229a541f.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4721901709 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84119--2c18607882d97e0e4e9a300cf7f5ace9f29c56c9e21da64f56271e55d0cee5ed.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9d19030d9a --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e43019f736 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/anat/sub-perform01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199860--d160d3186871da24fd4265a358c5c6f0d04b8ec759ca9a87f0284a16394a8edb.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7b49d333e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12033--e77e05e2aac19ec4c842c3a38bdb7cdbdd8ac856abedbc5075c3e576e3ba1e3c.nii.gz diff --git a/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1376a471f5..0000000000 --- a/derivatives/labels_softseg/sub-perform01/dwi/sub-perform01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12075--04153c71e19bdead4cb2de48f08b271a1fadb53e7da6ddd7d8487efb700fb9b9.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.nii.gz deleted file mode 100644 index 744e3850a5..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419897--7cb4f96a51056aba4b1a85ae2a71998bfa5a2ad6629c13d5c66be96726d59990.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.nii.gz deleted file mode 100644 index 10349078f9..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84520--5d928f77a58b35bdffc9c20c5c14761997336e294a22121d42712d654de10c86.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.nii.gz deleted file mode 100644 index 4a802fa5ed..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203563--e81a27d9f418e1e2bbd4125e2d5a834a5ddb57e2e6c8a65de6b27208ba04d766.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 278a22e129..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51537--d466b8b710502e34796d635074acaf30e408bf0ccb5ccd55b5d8de782e12c70b.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c94ad0ae13 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51581--870660553baf785965bbfdcfb18a974af519df61b86d117847f7ce8f2f5a05d7.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 81f5f436b4..0000000000 --- a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s49657--351ad36b2816cb195a1e7c4413f56796eb55bf0ba63cde7542b8d8a1b297ef4d.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..862c2b2696 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s49645--f5a7c16224a7f460a688e90c8a0c0c5d10c1ee3644ac4910123c3a55a6ebc73d.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f5be633b72 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419864--ef089daa868abfef68b86c561c8f17ff731f9418b886498cf7b8a034e0691c21.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db67d1124d --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84492--afc3be17504aa3042223f0847343fb5f0222ac954a62f0e9b09de0b70c81fa25.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9d19030d9a --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8a904abe1c --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/anat/sub-perform02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203538--c0cb2c3ae7c239d55387df1da2b02719b141dd4355aac5fe12b63cfce22126ba.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T1w_softseg.json b/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T1w_softseg.json rename to derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6a54d57560 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11652--28342cb1ece2e74c00c8f1998ec0d165bb54f1d3d35b502e405919b5e13cbad7.nii.gz diff --git a/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5eacad10f1..0000000000 --- a/derivatives/labels_softseg/sub-perform02/dwi/sub-perform02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11691--762909b08fdde29a981e0d78dd5127f9a7d71f107f7a9bf702f6ac9487e9db64.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T1w_softseg.nii.gz deleted file mode 100644 index 778c6f4263..0000000000 --- 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-/annex/objects/SHA256E-s54696--522c773d6994954aa2720e2a221627ebaeba4ede44c3ec0449a8541ff134d851.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bc371e8f59 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s54669--db58a4966b40a9af4c54b2c9c7ab14a85aef8d8b4d1666e827de802342417fb2.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 3286ad506a..0000000000 --- a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:40" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 95fb22016c..0000000000 --- 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b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..16f9c9fe79 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53483--4740c177fce7f350aad8d0a6455aaac2092ed6bc22eda6bad51bd844029dd334.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2a52540949 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..651f09facc --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s430117--d9887afe141de8af72125117a969c2cf5c3edf28ef55700eb781d91e92027515.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f7b133852 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e6f17f78be --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83905--f507c4193d0d6dbe7a0d95fb7eae70c622bca49a16657a9568574ff56ea7582f.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..abab1c89eb --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212221--d6c7e250603f90690ff9f81d3a799fcb01f014fe9f90736b8ea88b4fb47405d9.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T1w_softseg.json b/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T1w_softseg.json rename to derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e450cb7ff3 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12153--f84379f1e75c739d0a9a5708a9b8096f1dfc1cac798dc14fbe0dc76ad9999d33.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index dba281f3c1..0000000000 --- a/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12193--941b7ff9b03a0c2892491982aa3e0ce22471a9f21a4f6a18467c94f4a3b15a0a.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T1w_softseg.nii.gz deleted file mode 100644 index f40a80ae82..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s421417--652b54d46a73c37260ec2c8d901c8653236078d9ca83012b65c979a0b614178f.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2star_softseg.nii.gz deleted file mode 100644 index e4ce495b60..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83652--4e116cbf474d601f88f0ebf07fc0b7c8bfc616780c695512ac535807e8031a9c.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2w_softseg.nii.gz deleted file mode 100644 index 19207a626a..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s204746--112b10342a333c6359772d7a3d6c4fa24cb1c8ab7b7e3c41727ba72299caa73a.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index dbba4c1618..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51786--745d95d57a2b431720b0309fdc7fb402a3bca334bf90234113272a34c4ce94ed.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e5941fe81b --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51704--4f0257d4b41571163561e3357d78c8246e2dd7a8cd9a390b8022ee7064202613.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 42a7f56c03..0000000000 --- a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51896--1749a437813da8a34cd9719812d34b63b6a073520a1cfe986993ee4f1dad0728.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz 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"Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..68b90ea0b1 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83621--8146f00f6a3c4cf18420c9f67f792065c1bb80bfdb3e2332dd8ec791d6d38be0.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..75cd2775f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s204719--6f131e95764cc4aed641ee437585a8420fcb84820ba6228854a08cb3a993e3ca.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T2star_softseg.json b/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T2star_softseg.json rename to derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..458f13f824 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12127--a20df077241c2cc23f470b2aeb83047baf7dec3ccae675c1475c3d18be945269.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7f582dd123..0000000000 --- a/derivatives/labels_softseg/sub-perform04/dwi/sub-perform04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12167--1a2d7ebdb288426be8c91dcef0d89714dd9fb2f158b8345d7c109893fbaa1fca.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.nii.gz deleted file mode 100644 index 7b21649697..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s412190--61ac1f3b6f8da6dd1f319f74eb40b75f7ce04f0b5d1d415fcbb3dbebb7e04b22.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.nii.gz deleted file mode 100644 index 2d9d4c4d5b..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78647--e3fac968a93e7ba4b522a654f84e485ebfe5739af1a8552325ad452a4cbe89a5.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.nii.gz deleted file mode 100644 index b6e7f4569a..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s170759--48658e46fc40118949f251cb86e72a3571c851972c1c0e22f096a0edb9cf52fa.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0a0dac6e82..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s47928--e47d67ad41f04fc5fa63c3ad3a7d698cea2d96fd33465f5ca7c1f3097c1a6a21.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eaae2f36e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s47831--09a0fe18519d22917a373c5c95f55787b4af23160153f89f42dd2155d47564c2.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 2a7098c6dc..0000000000 --- a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s44847--7ac7607cc8232c4948ae63622e0c59f64841404da9c3d04e0bb4d855ff346375.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9e6b5ad6e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s44834--45730c508bcc4b67afd728224decfa09cb862f06b418df5f5b222d80331fc0f5.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2a52540949 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fbe2873e63 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s412166--893d599630ae631afc6268796b4bfdbae6afc1c7370f8b95d62613e1c46f8a71.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f7b133852 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..037b3b581a --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78616--696fc043e0ea04bcd39c0de4a1bdbf2b8707063d01d8cc02289e3f55f3b4add7.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..db553be61f --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/anat/sub-perform05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s170730--2530565dd29b7e162911b738ce288bbc5e61f715c47a4a0d2e329755cb9d0ebb.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T2w_softseg.json b/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform03/anat/sub-perform03_T2w_softseg.json rename to derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d9112757f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10642--509e3a38852fced7364449d0f4b7faf24dcddb729cc6dfaf877d843ab77309cb.nii.gz diff --git a/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7fcda862dd..0000000000 --- a/derivatives/labels_softseg/sub-perform05/dwi/sub-perform05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10683--72304be929dc7f3646d2bfac004f02426fa9be319b49b3eedc09e0568af49eb5.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.nii.gz deleted file mode 100644 index d75f069ae2..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s417040--7a2f9e117e307a177a085c9e0828ab866f0d4d2f71d3b7f19865d53865a7c175.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.nii.gz deleted file mode 100644 index 4ab302d047..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82532--a2238ec9ecc142888787345d43a2638f290277adf4e560de0e4806a9842e94b7.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.nii.gz deleted file mode 100644 index 284e46a577..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199207--271ca3a7b5283bb399bd69149221b3b18ec2da1b11af99d874dfa35223f5807e.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c8a46a39b4..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s52098--58d420a492f979dd45f9894d0c70820983a7f0826069283dc477f0ae17cf3f6b.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5a16f48c4c --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52041--c51ea984a4f060137c8269aac4fca6a84bc86681644634b18b15b5710e9f2a54.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b99ec9d099..0000000000 --- a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s51024--7f0ba795db0300ded1f819dbdfc4130403d5ac740501a8d196c4a8777e71ed14.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..289d188018 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s50954--572f4f25b01409c1dbf94ed1aa8822e87521903d42369e57ede956f5dc4a822d.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2a52540949 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4b3ef85a83 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s417015--aa529b386a04176f8adabe194e50fb63c421be5c81ecb6cf3e0c42d8619f2748.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..4f7b133852 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c8da7e9780 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82502--a277a21aa40bb9ecbcfab0fd0d38cd340fcd1555369bead221299bf2dc55110e.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1a2fbd0238 --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/anat/sub-perform06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199186--2b9b11d585d80ed93c4bec4646dfa3f156e8e02637938616c37d634a33121dd7.nii.gz diff --git a/derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform03/dwi/sub-perform03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..94bc47088a --- /dev/null +++ b/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11525--59e8cf5281072148390bb9432df64dcb7be8f0504a297c8df3d62045c1c86286.nii.gz diff --git a/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6b663d9e46..0000000000 --- a/derivatives/labels_softseg/sub-perform06/dwi/sub-perform06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11565--11f7411b622075cbd4aa696f083f3e636bce7b75ef717b75af015a4dc5ab6cf1.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T1w_softseg.nii.gz deleted file mode 100644 index bac5af1f69..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s370053--ea1e745304f69211eb80c87fd1a89716036e5f9c074deed7a030ec08ea1ffa96.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2star_softseg.nii.gz deleted file mode 100644 index 37bcfd4e85..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s89155--f61e1e3d8bd10aa3d01df46ac4710cd34bb9d3172fca991caac7e5478be1539b.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2w_softseg.nii.gz deleted file mode 100644 index bb59dd9ba5..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s222375--6b5d15bd89fdaaf32a41f5d91428164a25c9b303e5389466be9e5a7f6f980ed2.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index ca076718bc..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40721--705cd9c645d6e848bbfac58b83e40a965fbe66a95334973f9e9063e514d20e5e.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1cf28bee18 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40673--ffe296ecd79c82946a640b2aa9b209739bf584c1cb85293de651104200805416.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8f25190093..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:41" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 9b13e4fff9..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39213--cc62ef35879d3a747f6b66cdf12383fb0c5f109e1db3ae81d252f5045d35af53.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e0be215c3 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39173--b24ca9c7eb34d686440526717eb7b7b4c96e4e5ce6fc80fbcadbb0c9ab7e9c9c.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..57d7889359 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s370020--666017c33825d4bd12d86bc6cb4859b98365db799e4d11bdca2e3c3854c91626.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2168e2718e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89123--875111c793cf4bd5d4b689cbdb749e504f3b23eae6106e21d688721f11155224.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0b7ce01fda --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s222344--36db9cba3d4a3923aae1f99e873c61082b3fbeb6528215b6a8e74874485d652b.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T1w_softseg.json b/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T1w_softseg.json rename to derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1b88db98d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11841--ad44025910d03084c8a5b72cb75092cc06f2e531a0d0793a5200da13ade8c50e.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c6e3703e03..0000000000 --- a/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11884--aee92e4e4ad493b382f0158939bf27bd138adb119fc080313e42d5957d41f815.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T1w_softseg.nii.gz deleted file mode 100644 index 3464a29c6b..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352318--001c1e87d539acd3d792da6c0a5e23018a7a5ae4685e7d05ed30ed9154145f0c.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2star_softseg.nii.gz deleted file mode 100644 index 99291f0c69..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80465--5416ea2cee1edadc4b99615b8f2fe854925ecaa46bc90b8b88fa2a73ba73e318.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2w_softseg.nii.gz deleted file mode 100644 index 90b92d6167..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s178824--ab2f9102cfa437b589e5971f46f4e405bcf7ee8c53162f81abb907c49ae45915.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index be187798ac..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36947--4e7f7b158a954e0333f7941a1b063ec75d671c85d6138c5afac339bd84980f40.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8fcda1848a --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36912--96fcb88346bac263d97e4817f68ca6b115cca9b3d793413e6a2f7a7d024d96bc.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 67716b518a..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35860--d57e2ab48bfba1e99a100ea8eee8358c2177648c5349ed04e3e8c159c7243b3c.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0689adb45 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35767--7735bc028d22382c83d986165bd2696a9e1b987d1078b515c6c79c24d1e656fa.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..aca5545b45 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352288--ba71d70bbb42dc9f94a7d932bd279a33b9f03fdd7af8512d192181737e5ef117.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..29377f494c --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80430--680e3c5c4c1aa9b58cc3225fef3158ac239c0f5ace63e72b3daace66c2b86fe2.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6cbbf39b15 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s178791--8da7b7884f6db28ee31b2ace40c34cbd1fc3c8269cdfe0d3dd0428a52eb01309.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2star_softseg.json b/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2star_softseg.json rename to derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..070487ee5f --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9367--8e8aab06fb08b12640db886253646746df1b1bd4528d38cca843182ec4bf1516.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ad3002cb77..0000000000 --- a/derivatives/labels_softseg/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9410--9d8f49611274ccb1d38700803523e47de943d2044131cf7bd957afed1868ff7f.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.nii.gz deleted file mode 100644 index 160b60467c..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363276--67b772d222e70fabc5d1b36ded3162eff52356fb16a4454c5f0fc70b1b5bc18d.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.nii.gz deleted file mode 100644 index 04b9428e16..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85942--cfb7dd87e6326c920038436803fa40dfc24a08ea8c99eec9f5afc78f95321809.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.nii.gz deleted file mode 100644 index 1132c7a6f1..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s214864--2e507cf16a21605def7f11a93660702696505fee52370adb7522a7336eb64ff2.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3a535a3ba6..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39306--1cc1640f48306e9fbf150795f29632cb80edb2111b00b97669af05812d309d60.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f5dea728c1 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39210--e97066c30f5779acb2fbda57baeb335d5c13ce402f627d24683aacb1fbcc8028.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 20df3cb830..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37670--51d2757771ebd2c6b06b6689b90fa59d17656ff84cd44f8ae993187226f43b84.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f3f3def46a --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37650--0835b9e7d0d7a1be42925900fd7bf7d81f81e5a3646598eb23a4e8f18839f830.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f1c075bd93 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363247--370df51890384c904ef618e81780b34589c9e9b2dca838936668532861a8466c.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..74358557ad --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85909--973843cad32c15f310a687fb1a6524e2bebb6668cdd2edfd9ae0aed12ee1cd68.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1e2d2219f1 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/anat/sub-queensland03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s214831--886aa066a6fea91fe09df5555fee7f12baa72182c9a201ee1455252b1e50a363.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2w_softseg.json b/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland01/anat/sub-queensland01_T2w_softseg.json rename to derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7a63b4db50 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10718--12994a82b3282c8ea1b841fe5af7570f8c8b95ca412b32990fde00060ec03380.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e2415ee067..0000000000 --- a/derivatives/labels_softseg/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10761--de58479f178243a9c913c92ec4281c4ae0fc3c36f2a2b1ed4daf0bd7b4802621.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.nii.gz deleted file mode 100644 index 83a5f6cd68..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s349479--d4f754ba78d964c171d3a63f76cd4a32c13ce4f99e159847996afa433918c449.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.nii.gz deleted file mode 100644 index a7e61972e2..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80699--a85aa9a9395d4acec6b2481598a05b88d8ab9b162b73256d24207ff2a43015a6.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.nii.gz deleted file mode 100644 index b0e06aab35..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s201236--6f28f73e6b881048bf5b78a633d47e15711368d84f98486dad11d34d17ad02aa.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f6e3816a8f..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37647--79832dae3fab9187049bfa8d4dedbeb0a2f60811f69ae94617b32a8f55326181.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8c890cd392 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37583--e4abaceca1dd7b84782dbd841dffd740fd1d6437cd2b4b2d87aa6a52c907ffdd.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 386a80aaea..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36474--08c659fe8a710cf72afbdf6ae25f1e76b5edd8eeda05e66ec769608442a3b615.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0ab8fbb7a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36450--f07f82dc4ce78964ef956920bda4d2579085e2142f4d5a068436327858e01f3b.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..38faad087b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s349453--9a70fee9867685cc9ef4e988a362dd608fee448e12328df07c06955c79f7c92c.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..23f9f1f34d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80669--41ad49ca24fa6783cebb8c99381cbbb48b79ca2ea8ed3272055c694e877f81ed.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0048af61bc --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/anat/sub-queensland04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201207--ae1ab84fd2e67c01a6fd9e50a643007e53512e4516d4400dde8256c9b376c1ad.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..033e28ee90 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9231--9474486aee5d790653d573d2868a6ae4643ebbf0fe8fe3b9ab79d5e7840dbd9f.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e808536035..0000000000 --- a/derivatives/labels_softseg/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9274--a66e5cfa18812565a0b3cb48c1f883404cd1fbf2ccf16bb170f2a90b0fec1096.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T1w_softseg.nii.gz deleted file mode 100644 index ca0b4f36d1..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360269--d1d59a86ce842cf615a122dea52799eae15d7117d4a60483d259554bca613b93.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2star_softseg.nii.gz deleted file mode 100644 index 6967f1c73d..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83004--08a9769c68b0559420ea3e0eb54ee7ca0296743f53e57afee18bbe3dd770c656.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2w_softseg.nii.gz deleted file mode 100644 index 1f30015ac5..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206902--8239e2e47f274e4b9f3897e1cff00a84ee0021a874e353f5d613133804e9f5ef.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e1b68a2928..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:42" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a3bd88f23f..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38420--fb998bdcc66182e8f36b25e52aac4f53cd499c6b26f344639bd539a7bf6d2441.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c7f19daab3 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38398--d01be3a190d1ad6509e3b5c530d49141d4b06dcf51b9287926cca2cd37ae3e5b.nii.gz diff --git 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"2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2167f55f73 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37481--68fa9aad2189d8e7f75533b7e76addd717257ed8eb237002534c0d51e4055777.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e891e61137 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360235--e156d8f81d6cabef462134f0534de8409f877c6699c96d70c9c2185fe44ea9da.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206870--46b5ec4277ccacd0725cfefd3e6c3e05d97a9bd4e8fbd35af661e7ca45893d48.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T1w_softseg.json b/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T1w_softseg.json rename to derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..114c473e63 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9830--05dacec83e76e919527f41d30a4d7f9ac423cfa9e86c4c80a8e1481ee537a875.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 02f0814d43..0000000000 --- a/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9872--fc0f444cde5fb2e5bb25bfdf3fe5eef570ebfa520c3e1b1ef62c4bce8280b0f7.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T1w_softseg.nii.gz deleted file mode 100644 index 04a71be07d..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356686--68d98576b80a6bc5b85e8970d7c566475732ed3d86bf90c1b4aec368ebdfc310.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.nii.gz deleted file mode 100644 index 0d6ea15e04..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82162--c383cfb5f4e486f8dbde0a74c23587b3a11f110a6f279997c86438152520f790.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2w_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2w_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T2w_softseg.nii.gz deleted file mode 100644 index 8c750b7b0e..0000000000 --- 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a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38362--90215c7cb19a5cffa3b99c2161affd2584366252a55a845baba07f71a73a6d6d.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d3335c00ad..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36483--90e19b6594fad7d60bec57c9df2638241b66f6a85766b28b4abff4249e333b5e.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f39d464653 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36456--f0f2ff10653623098683c1ad62c935068a1daa5f4793970d80a73dd14bebc510.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..445c566186 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356658--24ca1f75fa6f29cf1915db30bda0d8f71e2534b254846aa26f56f0bc30577dcc.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..737c0ea30c --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..23beb8d7cf --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82128--ec307f9310596db5e426444bc88fe6842182b2c9eb308e84bb0f9ec6adb34221.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..95e8d4ea2d --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1ba35533b --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s200094--27049fbcb04e08e32283be44f2cdbfd23a4e2b5b69ca226ca5196267e55ad420.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2star_softseg.json b/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2star_softseg.json rename to derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..676f10a6b5 --- /dev/null +++ b/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9964--b5346a24ebb13307de9b21ae7edd5b0ad081b72033c9d595c5c7b61965c0ccb8.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 499973c12b..0000000000 --- a/derivatives/labels_softseg/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10007--de45a8eb90d46cf9f5e1864a735816eca635cf2a8d8c41c1ada02cc86a722141.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.nii.gz deleted file mode 100644 index 70a5046efa..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423733--72347a4ecf6f22b3d43ede924c35c48b57fb242f6628ade1b7561c5b12fa881e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.nii.gz deleted file mode 100644 index 78a605cd6d..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s56911--b5461e4b29759b372c2c8543296e808bf8c9e0871601d6257e239439500d733a.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.nii.gz deleted file mode 100644 index 86b4a445b5..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206202--9941372c54a68dc7a86e8c3ea02cfa6d84abc4647310fb297d8185b75c4a1520.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5362bf2fbd..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38916--cfde6f958897ce57dbb9f41a0645faece2821121303ffdb8312b6ea32559f285.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5c4e2688b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38877--d0f213ecb9668feb0bc3dfce40adf5519283cc39f3668b2c77c1fd957c528316.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 010011ac65..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39341--b5402972c91483fca0abbd5286e856a824f695f89ffcf6d5dc098b30dcb453cd.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..01a1b9e500 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39293--13d1c8f612bdeec68cbd7ee68e0ee9be26990a34090ef149595c382b108c46fb.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9b5f6596e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423700--4834d9014e530aa723ac1dbbf565e34a00c7a7dfc83e03648025856763acd47f.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..737c0ea30c --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9d3728a573 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s56880--6b72212310cf032e443fe0181c606feace2eec8737f18e479c50d32534a476b3.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..95e8d4ea2d --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61cc2561d5 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206175--1d903d99733c9748ab350f83ae6cb5e7d22d3b05b1a8be4b01a431e511932b81.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_T2w_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..08bcfab333 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10415--f0ae54dd7b5310413c1398f048e43ced753ac7bd90a03d33423e58c11be99f5f.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index cd91e43636..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10458--7ab2f5e0942cee8b0ff4134ac63473b76f235e8a166d148c101b0b9a0b09782b.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_softseg.nii.gz deleted file mode 100644 index 0492ab131c..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s429593--32175e20fc650b0fe3fe935ba5eb2899042d7d0b8188cc790d418625ebc183c1.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_softseg.nii.gz deleted file mode 100644 index 3c1461ea65..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s60675--886f4d100bdbbfded13a6be6ac6dd0829ff81fee8a825413aa448da7ea7416c7.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_softseg.nii.gz deleted file mode 100644 index f3f430abf8..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216577--e77f1987d3aa421b4f18827a621cf852f1ab9192431ffbc3a7fe874998908d1a.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4fb5d5c5a7..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42504--79f0438500ce44244fefe79ee47968d484f1aa67533c2b188955a6709043a607.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7309c84fed --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s42464--ea39dcf4fa3e0f7efd406c48535c717395877f0bd962220ff3067464148326bc.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index a57528cfca..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:43" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1d09c444a3..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42413--6702f7954edc6402de399a91ef3fad11a918b6b63f5db18584288b4c67292aa7.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..25afff7efe --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s42362--0437fbbba21d09a652535a211eb4344da838ce0e157f0f16f58477b81b2284bb.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7b747c309e --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s429561--b57481c098c4b315a77d4e4bdeb2111cf0d2f3039d68af6177fe1740043c85de.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0714e5544 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s60641--0e4305dd2d4e5ab91c3ffe181d2c5e4d2de3dce31173b79c46163ebe17d3a6a1.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..990dc806dc --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8a4433427c --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s216544--ee2868880c65b0f49cf4db1401cf2fd5e67f34f36b698d2f7dc399128163c238.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T1w_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3219ccecb9 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11506--fb4bc5e67b2c69ce699140e45855b16defd8ac14366fcdac9f31fdd89ad29855.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6df9096007..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11549--77bcda93f1f0b8db073906472126b19da3e0de7036e8c3470ca4fe2a9ab86041.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_softseg.nii.gz deleted file mode 100644 index da12b8bc10..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419355--9b01a2313b2a7aca374fe4400cb2579d8c8a4debc4502493d057c15eacd80970.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_softseg.nii.gz deleted file mode 100644 index cf8e166e31..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s56293--49de3e3dcf8d9e2498fc7845d6e5dfa66e7994ae5c0acd07aca89fd1f38d8e5e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_softseg.nii.gz deleted file mode 100644 index ffa58d0b98..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183481--6bc341fc7def162eee144e771b845ec0654bb80c98c3b4903cd4d8a4ccbab849.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5f2f794444..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39222--f8b9ff346621515e5499b0b5f5da1c6cf000ffa3b7adf0e5e3503750f6f645c4.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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"2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0dddd73d85 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38006--b692f982e85423cf2c9eda39cee419a882fda449047835ed5cb946858444aeb4.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f30899f5da --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419325--0786d0624cabc9b27b6a194e061bcff614f8c8965632c039c6f844d402211837.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8653250ba9 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183450--e9fdaeb4d51ff9a33de69b6f12966f14cc1edfe9b8448b292cd3fde5b2f5c4d8.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_softseg.json b/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2star_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0bcd59d236 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10620--d84e014f0175537e3f26d43f87d4e5217a0a71ab51ae47010a50068c1802600f.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c09a4c6dec..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10663--e3c4cbe2352b54f149c255e19b13611c3ef5231ba0cccd711c62034eab4ccdbf.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.nii.gz deleted file mode 100644 index 629bffe6b3..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419503--c748440ca7a30cef1dc7c00e7a96a4ed110c569d28c8a1fbb98fa924bfcb00b6.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.nii.gz deleted file mode 100644 index 1b3e6d4a59..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s56925--43b74e0a0cb3511d906836a5933c5b1bc249a82f318817b17b067a91da895ef6.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.nii.gz deleted file mode 100644 index af0511e105..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202638--5a13bb4377a866ba33476267fb2b27b5c8176f9ae54446f10be9f05de64979ab.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6b6f0e405c..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40195--0fca617cb97e468600cb465285be3762091e08092ca1a61d9acb9e05cd26f8e7.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1a654b21a0 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40155--e021ccef3ee1f544c7a21a84b62feb2a51508285ca4c6abc09c442857f783c12.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 005bfd27c4..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39630--61b026d3712310de801ead829f07cb68f738dfa326544449da0d160794b9171d.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d8bb2a392c --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39609--0bd8278e5c88b0af0c22a85601f1e26bcaff8171c005ff601f5f3b807b27e996.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e335b7971 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419473--497e68ec4de9ebfc92547ac1ba6f6b32771ae5f2b4f577a5803dcd46d0a17fc9.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3c84592682 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202608--d9abe779bc60d555228032410ec92f2f96e9cdfed2efb179b57c5e638e2e5627.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke02/anat/sub-sherbrooke02_T2w_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2d135b3f25 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10543--7701317ffaa104eed85862371c0a81a173b3bce72d50d2df600072d4e6d886a7.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 87e5c4ddd6..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10586--fabf28271ea706458ea2ddceb34c70b9a5b6e57c07d70e05acd3ca3c762938dc.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.nii.gz deleted file mode 100644 index b51dc09bc0..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s424368--6301816328eefa82b9fb397e83d796eab4bf09098dd49c5115b1741d1729fdf6.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.nii.gz deleted file mode 100644 index dbe6e1631c..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57404--acb56ba1160f3001d4068d2d7e8f1106e414f7dd77ef7c68f81bdd8b98fa9e47.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.nii.gz deleted file mode 100644 index d25fe46bec..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s204396--372e3716514914afc36fb05ca22e1456fd604d8a1bb00f2c52a419a6bfdb39df.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 354c3d9d96..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40136--d0d44028e20c11e83f082740f93f75e057d2ca4ea5d9e41099861748176b9c63.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..008a6c8630 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40096--49b3cde26b3d0a574f8e9459234a8c036fa380babca51620de892241a387eb32.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 58a38f29a2..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39944--b985b2bc03c475562caa788d41244049b5cc6c43e14706aadf96876bd103ac92.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..51303fa397 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39842--1890205e5b44a32bbfb1a4ec041bce9e3ff26a9796d1b540461e115774b7f971.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ffd2ebfa67 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s424338--1aa069905aabe13b9302623601b5f50115443cdb6568f3bb798d7466122d3a09.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a1502c2851 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57372--618bbc8abded13a2888e5dc2eb4f306f30de8c84e4958aa98c1a34ce5a635b6e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..990dc806dc --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..41606ca7cb --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s204364--586261c1a11d7f4b2afaab74d5a761f1036e1cad1fa2bae2fcf96e1e83a6eab3.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e745a9da2e --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10678--c1c9321322b5899700995a74f84b1c55abac25e8507faf48d8a969e6250835ac.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index b9cc50fff1..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10721--006970732713ecdedfcc40109079a10831a45f0abe594f5aedd923833f4a8e7a.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_softseg.nii.gz deleted file mode 100644 index ce69e21bba..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s420634--36967fd8196b363c2eba73ea0f8af88cc7b7ccdb1a28f7f9f6cb0e8be55abd64.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_softseg.nii.gz deleted file mode 100644 index f7d87bb046..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57084--febf77f536e7cce481c72b73757cac141b9293005f0acd29cd0df3cf9b78c8c1.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_softseg.nii.gz deleted file mode 100644 index 43baf36915..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202499--0a37e26efb025a6cecbfcc944fc024ae6a12467b9bb97e45eed989e9fd7dfa8e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 576115d796..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:44" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f90de17e27..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39838--cb79a48287c92aa15a98ffdac997eae9a66e2b1a4f62e7db50ebe0434fa76b10.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a22d1a3037 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39798--8a3abe2ca5830b85f5ac5446459fb8e8f230ce9c29b4fe836f4a6484ed1a4ae9.nii.gz diff --git 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b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39999--ec9683a270d608370124d22e7cfce0664ddfd530a5d93d55f78aac472e6dd99a.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_label-SC_softseg.nii.gz 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exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..36e4f4ef4c --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57050--f613ab89628ca60dc00226d61893ebbece384e1f3de535ff58205fec73a9caf6.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1439dd8ac5 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202467--49be78e57b7d3416715c3b1db96e31b6c07be62912128a54ff1af77ec2137e11.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_softseg.json b/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T1w_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a164642273 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10521--cc148731123134e6f609f7f10ea9f2d235c7574da1ba98647141c7411f27a528.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3d0f5426eb..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10563--ebcf066c79741d010c20dd96eb9f476ac99911686a4f75eef9579a5cf62dfc31.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_softseg.nii.gz deleted file mode 100644 index 2a874d8d7b..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423460--ad8db92e5496da14ff35be0ad89f646e2ef6188745846dae23c7ce1cc9396e71.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_softseg.nii.gz deleted file mode 100644 index 3fc28aa91c..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55936--4ed1cc0eb91468d071ff4e2613ec4067f60902564dbf08c7893033d8d6ae12e2.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_softseg.nii.gz deleted file mode 100644 index 655e4e4be3..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s186499--26cbd67d1a78d22e5f19887dd1cd7d22024c2de96453a3e91865f5c7ceb3b141.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c932f39e4c..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39675--cd6ee4ec8eaf1a1eaffc32ebbfe23fe64f2dfe18a9bc2ce5443637abe53eefec.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7322e02549 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39635--d2a8f762a59d4de971bf15240c53851699eb56bdb7d05c75706625b57f1027da.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d1db69bd25..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39105--0bffda5bbbedc886768631aab85b54737cca2e6eb376eb78410d69f922a91fca.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4bada4a1f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39058--c39428eb7fa05049aad0315b9f4ed4c5fe6121398d4fdc064dd06e152a20327d.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2ad0d4f27f --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423428--bcf4f7a5c42265aa9862f60c8aff316015eeb2c2df142473821ef79fdef42b34.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f8181a9679 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55903--7c24c4c5562aa32fde6f697201f651ddd79cee370942322bdfcfa517f9bb8631.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a46ebd5dfe --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186467--f58ef500b2f45a90a2af109b651ec3cc5096934816d11c565574f0d2fe233c0a.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2star_softseg.json rename to derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..371382f925 --- /dev/null +++ b/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9985--689b19810c40707848c89cbc3c2cc0229b2e0edb34b2deffe9ec5c553bca7f3e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ec48a2ef9d..0000000000 --- a/derivatives/labels_softseg/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10028--fe936594db778e97d4a9119df9ad9faae38b426973c1ff97ed6b46ca3e661178.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.nii.gz deleted file mode 100644 index 129b6bfd26..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s425802--17343cea7694d3d036cb2d40aaab65e217507541e8dbb625d653c21285e503f4.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.nii.gz deleted file mode 100644 index 61a13bf357..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85959--001e167a66cfcc585471a3981e5071cb0e7e2ebf35da8fbdd23bf63cfb493365.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.nii.gz deleted file mode 100644 index 4841a39778..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206091--3505c52b96b4afb4430dd8f69e5081b9a5afbe8dd24f38131ad7b10dc9bef66c.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 7852d7d86a..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36787--fba6c55cd5080ff19247b2b527a9db7ba838da960c990a931b6cc33417bbf969.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e6dabdfd90 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36772--a5f8d304efeb4446b239a01641b788ab7b2d2e63fe1cd28ca19ad06eb7e52c21.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 07fd5af71c..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35034--3c38a18635966ad10e08cf1db278ef3d7433de39e4cfb9c09c354aafba02c51e.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b1d554465f --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35110--3670cbc8def7a73e886d921f698bd0d8bd4a07ec791c3b5a01e1a2cb1743214c.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7ea6b444a1 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s425774--dedd25ab7271fff43d0ca6a5337b6c614cf18b3537812a3dcc04398bdb3161b8.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1140db0123 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85929--a345f024913c4cb124fde16c2166357d6669a09dab9137af0c998ff5ca92b4a1.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4b21219a39 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/anat/sub-stanford01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206063--1af54ece7e4c5464b4311837209fbb4114e929583a57b9b6e2e8c7af248bb7cf.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke06/anat/sub-sherbrooke06_T2w_softseg.json rename to derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..35c861d33b --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13024--dc1272cf23f58060ff6118ab71a0ac76411a8692a639dd57796a54fc0b1721bd.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5e31205f43..0000000000 --- a/derivatives/labels_softseg/sub-stanford01/dwi/sub-stanford01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s13068--9c035b8c40ad4cd6cf320fdc2b83232e80e34a5913926568646a014722ff7453.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.nii.gz deleted file mode 100644 index 0c5822a23a..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s427948--52f5ce26650a78e3c461d197385c4f47a72f54fe49b2fdacd817f34e3b5b1615.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.nii.gz deleted file mode 100644 index dea2408dfb..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85295--c46c32def5269019ba3c1707937939de06978607a2cf5d31a54960c7575431c6.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.nii.gz deleted file mode 100644 index fd777aa93c..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s212974--705b33d6d84a9c71bd3190a55bebd593c32248839563d2cbc8f8cad622f2e66f.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 264e62639e..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38647--2f1ced72f559f605727ae0fb957c0930c1e950817df7bdca430bb4e3f14b3163.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0da9908301 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38543--b62beb1d6c46f50c1ad1ecb0be2c91c4842efca61500e1d2a9765e71376d61c1.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ec596b7da5..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37735--505ff188a769a01e073b6eb5f10d4cf8ee0aaf4218694902c4554ff898f63d34.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..98e8009776 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37585--34e6e2538c043c3ed955e6581b037ba6c39bc0ed94af1e9b859831f6c5fdb4a0.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd5941a5d0 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s427921--ca49d26544b7f5479bfd0d15d91a8274b5535d1fe1cd4d234ee5bffdc9344214.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7eb0af82fb --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85264--c52c67f3313b725ed4c320f0937562cd19b06c000a25f50841bcfbec73915730.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3ff165e260 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/anat/sub-stanford02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212943--20186bb8165220353e32ccf0f4e925d1ad641727f9a83a4628762c26958820fe.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f445b3f480 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12663--62322d63e40be2c899cb88a356d65b4253f6f4c707ab4137d3974d642fbc2da1.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 10eb24b53a..0000000000 --- a/derivatives/labels_softseg/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12704--8854c0c95c6b49a5381d1cea3e964d7c6cf38292dc0e8998b30af84393252be6.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.nii.gz deleted file mode 100644 index 2fec23560f..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s426774--1902051b71804bc515302d77a8d19e66ada464b77b4926e490fd673820ed7dd5.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.nii.gz deleted file mode 100644 index 1c56fb1a97..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84872--57b71b3e87673ef3f7ffedbed2a82c3c71cd2efe7db1ebd0480db9ea50b2841b.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.nii.gz deleted file mode 100644 index 981a9e518c..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211966--5e15b394771890020f5cf0fd560e1fd519b269054b9e90fbd1c060f55b2a5a3e.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index b54823cf6e..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38064--4bbcab02e7a07cf49f47de97ea176f771e66845b43a2a8147b8366dddc8e7e6f.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..83d2b8f8e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38101--ea1f203977789c519d86ee9d8d097f49190ecfa3c8142235ed796ff42f446058.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ed8f653a86..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:45" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 149e752d3b..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35305--7d02d2d20cb75775470d8d7798800640c1365d58b303dd197955ae07dff09ec3.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1e5a2d8381 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35328--3a0f9c2c22938852a5b5bbf9225c9b9cf9942ddd051b6dc05d19871461ac9fd0.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..557238900a --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s426742--b3f96a39ab8c979775a585add7a9f385a04982cf7d9a11fd1af0c29a7f730544.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4cbdd0c00c --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-stanford03/anat/sub-stanford03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211938--585eb43f8d670c430566a34175fbf09e82d67a7a76d219dd876e0f914c7728fd.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7d5ef73ad3 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11164--e294135356db790abb5e4b3b078da3a5cd61a6d1990ee95a8c2b6ae641d43bfd.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3ff861e4aa..0000000000 --- a/derivatives/labels_softseg/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11207--fdb708e6d3dfad919d476df96c8a766fba970a1f2da3a523a8b02395abe2cc72.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T1w_softseg.nii.gz deleted file mode 100644 index f3694f25a0..0000000000 --- a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s425049--6ad3d19402b38e32aca585d5fd9c455e5c3d9829efb54752f7061b02f4b97cbd.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2star_softseg.nii.gz deleted file mode 100644 index a22b01beac..0000000000 --- a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85912--74b5037d182d0d5b3325a890635e606bbdee21b8ef74f9db753c72bcb7d8ff6e.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2w_softseg.nii.gz deleted file mode 100644 index 4e717d59bb..0000000000 --- a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220049--b6044cb7417154db86d932816ff7f69e2d8804d50d8968e859bf4c4ce5a9a1e5.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 915b76b2da..0000000000 --- a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39366--75851918057c4bf291d4a2871fa55f3ab70c6e3cded618b524f5aa28ca0fdfd6.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c567ca5d2c --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39508--281b88640a58790b85136f500bb668845c53c33ed30217423b802dd4acfecc11.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 04b42b2411..0000000000 --- a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37334--1c8b2c78a96775b5693d393672cb74ccd14f4cda21cbd67e1d32e6828c19ebaa.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c3f801526d --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37369--c07ee00765e3d8bb783f2e3f8306fef7d71dce9fe044c32ee703192c410c1897.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 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b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6d5c5f02b1 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85883--fd1e89270d8dfdbac1db19cdf8460b7e705f90170d1e77eb4f407a72a74b1e49.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..ce3643d8d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1119eb1cda --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220018--16c8386edaad454c7f305bc2c05ab7322b0759c523a8384a0bfaf356ceb4baaa.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T1w_softseg.json b/derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T1w_softseg.json rename to derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05fbe90f1f --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12778--71c128167a56cf33108ba259474218756800529c1a3dc80b5ae4866fcccab3f2.nii.gz diff --git 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b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T2w_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T2w_softseg.nii.gz deleted file mode 100644 index cbc2724b77..0000000000 --- a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s179521--e46f7b94c26bd41ed9f9009df300fd84f44e94728325ecac431199a246e52f4c.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 35f31bee18..0000000000 --- a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35993--b90a44d2d358ce440900bc18752d6bcc51ff8b9d2a9bdee3fea2baf80ab9c710.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0fa55cb12 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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-/annex/objects/SHA256E-s35167--aa48d4428e22cb68d0cad75802ad5b59f00d8c59107a017001f76f536fb8a15e.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e8fdef8eb6 --- 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b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..de5e2e1116 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423105--76aefb84240678a266980db1ecc598ad8cf19540dac8e4727a729c7db383e22f.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..03c237b3e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b010355253 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83346--f21a740ed11c3f280163f65323923c83fd7a48710a0899b887b4c1d757fcd98d.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..ce3643d8d3 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..062c59b26a --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s179492--35f58ad488b9a39bb78435ea88c3df47dc8aeda897d013f9daa623e315179aeb.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2star_softseg.json b/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2star_softseg.json rename to derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..33144abecf --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12033--e224b50b43f49fc9935081bfd648169f51a22e1c949ad07ea5d9b943b1fe61d8.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": 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file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T1w_softseg.nii.gz deleted file mode 100644 index 05be7aad70..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s414538--d83edd7b4570e5167c2491fc525a75538e2ae3f9079abb5617c5952ccec463dc.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.nii.gz deleted file mode 100644 index 9c2e81a9da..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80939--935464a84d956821c4d8198f4cba583a948dbe959b9b45177994b680bba3cec1.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.nii.gz deleted file mode 100644 index a7a15d2571..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s191761--88847f89f3a92e0206947b35f26a534dd57ee3c8afa64c9b33dbbab411e89675.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 98812a59e9..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s34904--b4dac857ead2c0cb9e2811d17bb1bfdffa498f33fc358f8a5d17e027289d4039.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c19507566b --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34770--fdd019bfcd3f29ac819dbe87934ce08ab8cf45136890164d26b05520d733af91.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 66632366d4..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s33944--f370c7a3e7ce5bf985f8fda629a7d7148076761fd82c4c5484a09f9ae650f899.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b00d429d59 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33891--5e15df6011f0ff6c92b76292f133b405bb642a56337b508ed2c7373ad2d839b4.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4cfa4ba9a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s414506--248f96c87a26a58648543a463d282c4128065a2789f8978fdc700b1dcf85228b.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..03c237b3e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9e2c3d3d6e --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg/sub-stanford06/anat/sub-stanford06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s191732--62a76ea0ebb29378e7dae606d5c87f1e719c6cae5af339148c0a5da28cae6e60.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2w_softseg.json b/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_T2w_softseg.json rename to derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8e0f0ecf12 --- /dev/null +++ b/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11505--65ea1761bac459c8041b688807123b939ee4b8475c4f86f442d8b49aed258bb1.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 16c6902063..0000000000 --- a/derivatives/labels_softseg/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11546--0871d0e6b23fcebcbff1628cc28258b0c11b60f51c2953b1523b1bc80c91125a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.nii.gz deleted file mode 100644 index 4991a49d03..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s363238--d73d572f37064cb986888836fc69033502ed2960fea7ef3d8fc25b0da54453d9.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2star_softseg.nii.gz deleted file mode 100644 index 2f309d5690..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86279--7bbca36fe39105301543e65daf5a7cd7e2b17abaa3e6b4c2e0e4e20e22fd1cd7.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2w_softseg.nii.gz deleted file mode 100644 index dad97339fa..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s192170--8a0c86c7399515e5bbf4f5144f6f6490d3502c0cc426c88f103a5654111bd358.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 92fc0dac0c..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39483--d25680362a97d8cdf177213620acb31de7677f77ca3d9f770d01a14b01dce7db.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd9fc95c49 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39435--c70f51216337d12cf81030739a0a2f11b3fa7b28b4efd728eab887554a335e9a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 262635f88a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:46" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ca390195fd..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38310--84821ddd9ea6c60d653b1dcae6220293023ea9b99e9740d477e9270f566e289e.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3bec243760 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38243--166b6551ffbb30e8095293803a055848c533d14315f6fa3036121090a3a5e21a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66c41c83d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s363210--fbcd0090d2a139dc18ab0b855d6d6c017e7a8ba519d73a7861803486fed3ecd5.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f2962cfa1f --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86246--f609fd42636e93eb4b2ee90b774b3a256c067e12dfd745a56f3ecd0e8efd2d29.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..afa3e8cea6 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s192137--39046f26fab05864f3c4c793f3c7fda903bae2ed3bded2da9b279fb16e2654fc.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2star_softseg.json rename to derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e48a852bea --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12746--d783e4957d76f2b128d3c0149b2f8069f34ea0071b51072cb6e5c74b914b449e.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 9d92ad4b5d..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12788--85155d45ded711f1cb80c9c62f1cafe4661bf36f5932d120bf6f6c0b26c875d5.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T1w_softseg.nii.gz deleted file mode 100644 index 4a43c04a67..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s360223--fa5dd74caa93e56d4367e8174325299fd854b02528c6f55b6fab4d1d4ab8964f.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2star_softseg.nii.gz deleted file mode 100644 index 97f1382731..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86097--9744a57e49c1a3a067036c9cc40f1f4a56d793d9f9aaded769b1b7e3824a7340.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2w_softseg.nii.gz deleted file mode 100644 index 2851f353ee..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211254--cd505c20e18d94de4ec68691275cb5d293fb15c2c414fb9fbef6bc237d455480.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 561d621e4d..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40949--191a36988479464811124c4207689e8d2224c730af452301c5edc9120092d4c2.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f847cb875f --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40899--94df5554c7ad77649601e2bcefa2721cf754a9b136b25c4424faab0d2e259ea7.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4c19d52e24..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37831--cee9a65287d80bc8c53f4eddbbc96b385e9741f3630e220d427557165196fa6e.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..13e4926cda --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37788--c461dc901d234f740355ba3db2276af455165a3c276d5c14837663f0f7a90d8c.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5f9791a4b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s360193--2d0b5ef998432e2bab94543395953a23169c7657c4e8ac1eded1f72a60c2cade.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..655647a313 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86065--b933c3f35f66f811c4e84851874c09de736a07ababae9ac8ec04176f9a61526a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..06596425e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211219--d28f7ada5611c98bae68537234e6032f11a8fd15afe88685abcb5ac68cd5186c.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2w_softseg.json b/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg01/anat/sub-strasbourg01_T2w_softseg.json rename to derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8c102e8ed1 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12942--190c547d0d7c92d4383f54d355ab56e187cab297391bc68ec8bf2a3258b8f38a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4fa070a62d..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12985--927d6504d16a6f9bcb088f215d7000f01781a3c62a5142c26013c5240a220b87.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T1w_softseg.nii.gz deleted file mode 100644 index 9d033885e0..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s371780--f46355727dd75f90c15d5ee3ef849a2f5099387579a4625b471d6bc22ae3bb82.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.nii.gz deleted file mode 100644 index bd0f6d8503..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86092--ec1ed41bbc0b9c64bbb93d8c294274507b2e2b8ba6d0d01608e40e0d5b9063f4.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.nii.gz deleted file mode 100644 index 2e9278a2ec..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220820--0b46c3b9d5591bdb14ecd4fbb3b4d8ba77bba2c2b32eab413554766cb291619a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 86a813cda8..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39922--253c0f41ea86cfba42b6836c815215c995f3a36c79d9bfc52c82294d17f852c6.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..330c879430 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39878--64a64a1cb3214171977e649d8b275dd2aadbe0d9effc23314789a4dc7cfa5027.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index baf347d90e..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38558--ac7946682ed49fa29e898a10e1eb9c528fa48425ed541f89925a9c5dcdff9202.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..89ccde093d --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38535--ef916a7d42d7321ae8de40f0d515278413f08f7272f576b8189d3e9221581f3e.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..347e0afa0f --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s371751--d108887cefb0fdae4f1aedccd70adb754c5659b3aa609b70062f9d943babccba.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8f9fe9640d --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86060--e55211f73f701cb665f7c53e3a86d639530d2dfbd0f44d3636525fdc59d0c17c.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a4d0704841 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220788--0d337de8d1e08d4bf62093cf3d3d0bc6401aa4767821be8e5810826fd2461608.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d2eb75ba27 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12860--bcd9bdb2a4291f8e365ebfc5d771bd9cb7a016d0302d4e0ef4892cef9b5e38da.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1c21f8995c..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12903--764da787e4e1541d8faf8d5bc27abc82e7c6a03643accf4e4bca242b62a82665.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.nii.gz deleted file mode 100644 index 81e879ae75..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s364050--4aeb841792b72d3f0755cfbea0ee6cbed5447300701f56600835578f0d5af034.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.nii.gz deleted file mode 100644 index 203cf64723..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85809--2884182972d83cb1806c3b73085afecdd3adda2f99e9cab6d20c4446a38283b6.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.nii.gz deleted file mode 100644 index 74e62062af..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s216283--bfbee2f93cd6d2e1759ab1e11a8bad9bd829b14eb0d45c3e5a763196faf6a8e5.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index cc849dad20..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40472--413857281a98dd2550cec68880e6fdc898bc56bf43fd1e8c6f1a8c65d8ebc734.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cc63e3e01d --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40394--f2c69a4e2b10855840ff42f9d5e44c3779e26d372b255006b17decb10254eb2a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7f13b1422e..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39028--4457c170a6ce819fabe3fe231d9eec2c5c80a65fb30161a2417c8b1990b0e133.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz 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newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27f71c3aa5 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s364019--b94cb282493edd5cb919d78f724827b8f4f89a656172da55f48405913673758d.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e03a64477 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85775--239213b26fb39b822d1a6aea1411298a734f8dc6fa0c3f2b851315ccdb9a842a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b0b02dd38c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s216251--67553456f346385776987354cdfd04056a32599ef3dcf02eee1783ccf445a04a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T1w_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T1w_softseg.json rename to derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..82adfb7e69 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12508--51ccfb429320078163f685c1d092a51fe647565cf9f9d95d52f288eb759cc478.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 518b51de7e..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12552--b94d5f54a54be22f21e58d3f87bbc8c2e83550635358e59be2e826447147593d.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.nii.gz deleted file mode 100644 index 89778d470a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353283--18f9220046e20e97a448211edc6c64957edd4b73db1a6e3ed25c88cda527046c.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.nii.gz deleted file mode 100644 index fae494233a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83183--1e1f8a826c7770a20d9c45734e9a89914be4272abfe346a90cf4151b795d04b4.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.nii.gz deleted file mode 100644 index e06611df8a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s184160--d7d9384a5ef5ee335c31cb4d6c000607b2cd57395097539cad43f2ea52a37ff0.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 2afb32eaa1..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38076--e36b597d18e2c6e00785d4ae58b210f58fd045fd59276f98e512ce666319d0e7.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61b61f3611 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38041--40243489c55b5436a5e4de924a4f81076ebbf479266811de271297202299d249.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 54a8c85799..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36967--79c2bb1baaab67e9264f86f8b98556db12741628217001794aa47a6c72f7c38e.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..174b6ba954 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36851--8fb88d3e305d17812bbcc68571e9384061848368484282f6add7f1597e6a228a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8598cdc856 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353252--5f3f9cf254b46a6609e26b37cfc239bee1537bdbc6c085340278300bc8205a43.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..58ea12f885 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83147--fd6e2064a7b3b69481b8015bdffcc75dc18b1dd707b13d2aaefa945ad3df14d9.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fa1c972374 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184130--2bee9911bb4474a599a10acb9900e6801c030e0902f047d3f91c3fde7246b927.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2star_softseg.json rename to derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c792ad7f00 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12143--98f271cdbe7974267208f1f3f9d41c17fbc1966f63e9a434a6c40c49a7e40a91.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 49a46b0752..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12190--c61653da02efaa674e3a2ee5c04e20dbff064ca2a24be2fd375b4683987e09e9.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.nii.gz deleted file mode 100644 index 7ef6c53c8f..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365131--ff120dcc62fbb76e7a31b1bb2773fae4bc60e2b1f3c2a46b4e911aea1a0efbce.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2star_softseg.nii.gz deleted file mode 100644 index bba0d2c53d..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84718--8792933372f09b7ca6c97b7ec11b050d31583a51f43c78479fc9eca1d938da20.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2w_softseg.nii.gz deleted file mode 100644 index fb2c2850ec..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s214996--d9233ecf63c78a2ec2e28c0e54e70e6ab2dae4de8f60ffe088bb45788b0d2cd1.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 23e45c1cb4..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39790--537036cbe90215865ad7c2c1fd6f8df9b2aa3bd7f830b5d7e94c76dad0658eb5.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b8b89c1625 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39773--116977625850c0961292e8b897f203bbd99a9b3a72c4e47228f1d27aff664934.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 7de3cf067a..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:47" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d3bb62ab6e..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38541--7e73489d72b17ed960564f8092a5fa81c62a35c24da1ff53bd1013902854fbbf.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a853a4e6f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38515--a54da846b2c6ccaea4b3cf0b4395775f38d0417bc51839c3df0bac1156cea3f2.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..83bbca7b7c --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365103--b98d5eb20c0ba5aeb100f2116a6d58fbfc337d7bea08944c9c14d077d089a24a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8d17813cfc --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84685--0fd486733e0bfb53ed300a76a2c4f38fc51007d33b587f5e31f3513388d48ce9.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..210d370d60 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s214968--3f687d6026dec15e2e538dc551e916a389e143556f3f1a81c4743d231b71913b.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2star_softseg.json b/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2star_softseg.json rename to derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dac5553718 --- /dev/null +++ b/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12576--db0a495bcf469647101786f671c597cd9b907470a8d8193499324ee9d5f00adf.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c631b86070..0000000000 --- a/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12621--0174b6f7e99cb0f2ab5a836f7f4ed253c309969e6b1f0633866b629639f3cf26.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T1w_softseg.nii.gz deleted file mode 100644 index af3688800c..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s362666--7c92af7e596169c210c523063494ab8f343a719d7413d012567d8781e2eb4c5d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2star_softseg.nii.gz deleted file mode 100644 index abe9e15214..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85755--744d1a30b73da04ee4334c3f468178f96a0be2879ce418bb697e0c6ff0870984.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2w_softseg.nii.gz deleted file mode 100644 index d58f03a596..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s187355--25a889991c54292c21e894ac1e8c70f032057ceb5a69fc5553d43f90aa55726d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3070fd57a5..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39433--4cc81645d5f15ea2c43c189965fdc24df8fa0ab44b233e779b3cfeb1a7558f2b.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3deab6d662 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39473--25fce8d30acb398cd570beb87d3d14c15a62fccfefec72cd39a9972551eaa357.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index abe878f736..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37419--dea5e9b3b47458e84cb12c18be5b9b95eae3f5ec67c5d9efcb69f3e0f37e6bf2.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..992f2e43ef --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37397--b9eaee08ae2bcb1699b2fb2e28d95078aa2a018a41a0436a564ac3f7d5ad3bf6.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..06559545d0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s362636--7f341a5a6f5e65592e35e3784517e719e0ebafe1dd7a2c9fd4c37089bb6966eb.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0d75a113bf --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85721--39ea65b269109ea7eb7e4faf766f826c8150d51e4d7ed50a552e8860ffbfc2ca.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..baf16484f4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s187328--12cbf8dc23f4ed15d6a7fe1b140aa2b917b96e7ce0a391f4eaeb3ad7090f142a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2w_softseg.json b/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg06/anat/sub-strasbourg06_T2w_softseg.json rename to derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6fc3fd46b1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9614--e7b7f6c54b120a4a9f5377de4d415cfcb499f72112737ad92c161d7805833990.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3284b53b37..0000000000 --- a/derivatives/labels_softseg/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9654--f245951588dc901c25d47d44fc81473ccd13ae350c334848c22bc4846943b45c.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.nii.gz deleted file mode 100644 index 9953ebf1c3..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359748--7ff4194a57b43564430da8f29cbb825777ecb2bb1f71eff594998f6bc3d8bac9.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.nii.gz deleted file mode 100644 index ea15e3dc27..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85765--4d435392b17de6fd6fee9da23ecebe4d75615ee95abfaba7fe262536d66c5bd4.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.nii.gz deleted file mode 100644 index 813e8a03da..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s209877--8efd4b5c5f4694d11669637991633a1e0fc9abafebb13488c0f9f841c4c5bade.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1150d7e6a9..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39012--874dc312f6b8748eae309bcedc3a0cf55ca519aaab43c9b6773e2da8a7069432.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5cc47b17c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38937--f34b1bab41bbea2af10b3929d72373cd3ef4d2678c918c9b00550d4987dc137e.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7578109a24..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38018--d55e567682c4a35f261e5f52207f8f45e450ebf2a059c547079bc9dd99c25c74.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e0067e4ee8 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38000--c6734760eb962e2d6db67141cf8d55160bead93aaf28bb1b6245e6f936a12e75.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..392a54ceef --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359721--c9cf669128c09561b46fbc5c7b4668e5388458d28a2ed0258966d8d2a364c8df.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..27290c5b3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s85734--a9ab35f019deebb601390f84963732d0e9229f2f34f21b4ebc22394d7f79ac3f.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8fba61519f --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209848--c2065b5c50cf2e5b7ea354aa66ac1d7547aac8edd0284e87cc0a6296b037ddb2.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8e808d4809 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10594--4a4c8617360b8ae6b3c3d3f4233251fd87ed8cd7f4ecf2c220b55d17844355fe.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c83fb79231..0000000000 --- a/derivatives/labels_softseg/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10634--98e321610b7a6f5a54fc4a33087bb22b1b241cf73583e8e6a9246c1b22ad7cc9.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.nii.gz deleted file mode 100644 index 4dc9c55fcf..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s358641--0e284d32920592c093295b1d1e74183d26acf10bd7bfb55daf0341279b180a8c.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.nii.gz deleted file mode 100644 index 545922c255..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83268--7ca0c3cd347d12cae5a4ae324a480a7c58bc00eb9a18a90c04589820a56611a2.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.nii.gz deleted file mode 100644 index 4b33a3b884..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207766--6bd7f9c5b0adf9f16a7331106b13c56ed3453f94afed005d0a39f24761d3698b.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 35316b071d..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38127--101fefff84026cedd3da495a9669c958e5280b6ed5203404683c60cd7321680f.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2a392e6dc9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38082--888a326a46c829f8cfbde2849023d29914bb127c8a2a409c53af84aec5fbddad.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 13092fac62..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37359--3131c2e8cb6a8b29c64e4282e168650f05e0b9749874878a0d991fa1ae2927c1.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..72e52d1ac3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37360--e623571ca55066ec917656d3f024470a2d11e17b840f8aad8d07fbc1a464cabb.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eaa8bcb393 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s358615--7e08786321fe7307732e5cee9a4607137e39e9fbe353c6ffe308463ae01e1380.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..418129d973 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83241--e5e928413c583f8894518991c5314c498e940e6036f480895599b3751d5d28ed.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c49fd38f62 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207736--9cf57df0e06407e8417d7299a8aefaee3f420a69ce340d30778db621e5c0e7fa.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T1w_softseg.json b/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T1w_softseg.json rename to derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d960ff4793 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10129--efe76d6089e3d909965708f26cbbead33aae5baf9d9aac55e4fa2ea2c4ba1042.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3b6b33d67b..0000000000 --- a/derivatives/labels_softseg/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10169--c01a71d8ef7148c3b830754397b37c4f8c74f7f2def712ec8408cd5e786ddec2.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.nii.gz deleted file mode 100644 index b5d262a18e..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s356378--2dc8c8b9868d279bd269529add4aa7a07ce5f4cb42fbd311ffa3fc47e4ec8ca7.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.nii.gz deleted file mode 100644 index 781f0402b5..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82763--cb698bf61fcb5813059997f67510a7d62ce9d07a0d0ab50fbea767110e46c885.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.nii.gz deleted file mode 100644 index 48a2772e6d..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s204171--555ed3946f9d904b498167da4b8370c2f852cdc4278c0ab7484450f19241bf5b.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 34fa12ad89..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38068--a7955ebe15673aec0930f7b2e8d1eb8056da2213cd1b5837d2dfce510c7501a8.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ba5dc7f19a --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38001--d94c0daba78b26c549610cd3088077855410f8365905977c7c4c3c060ba561e6.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index cb1ada3a45..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:48" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 40515f7fa4..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36523--12b4803f0c091e3fbfe0431598e6068ab83c4985ff5790406b9c5e7fae6c4f30.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..07aebb1bb8 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36485--e636dd686159896785b46888118c5ebdb7f94442dca59fe95365d06c42dd628e.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f274a50d66 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s356349--adf9cff471211c49b7d1fbf4a5439256ca93147d37f2da972135f4f50901bd5b.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a99d79c498 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82733--8a03a5aba0fe878f4b09eb4490fb77d3bb7d92066eb2ab91ae069f0a079778dd.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..927775e433 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s204144--00da66d0d614e20883040158407a1e804ff4e2c2d015dbb3960863592aea7003.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ceec0c35a4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9935--013353c90c3a79fd15f5f02a6ccfde79def9b789989d5803f0cea0232bd9f8d4.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 00fde17ba7..0000000000 --- a/derivatives/labels_softseg/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9975--994e96e6c11e3a43c415ed8cc91f040a07448895cc95759f3bc2cc9dee775b13.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T1w_softseg.nii.gz deleted file mode 100644 index 2c39072a68..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354972--e19a97a5062516ca272bba2812d3b0a719dba6b37c85b223f93b89aa8cc34823.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2star_softseg.nii.gz deleted file mode 100644 index 81ca28008b..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81895--2d036af7facf876b33d34481061ffd07c1aac89616c875cdb64fc3c237aefb89.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2w_softseg.nii.gz deleted file mode 100644 index b980a86cf2..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s202644--109f269925bcb27d9d9cb0344eb258aafc3ba5194080c588c10455b96f4bc2ce.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index cbdcf357a6..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38118--8af68503103ed4dc9c3f72834fdfdaff674fb15dae9683ef72c407b28de71c6c.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05c617bfbb --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38081--359cbc63b0503b774b36d784c8e7f0a98a1a73a3f9de43369d634b1d0598659d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1e9fab1eb4..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36397--3359b4ae6602f88e34214d1bcc1efaad018e82ffcb99490ac8e18459563176fe.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1363ab0366 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36347--41d1bca90e16b56ec72eb46c880dc7e0c49a011f19764165ac086285c13fe195.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4b53c1ae49 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354942--c5dc3bacb414a291605d514e70f783e6d17081cdc0bd9e6792a0edfd91d2cf22.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..711105b566 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81862--586c27d3121bf97212041b49d5608a82ec54e980791f398d99503153b1929c71.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9ad5de164e --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s202617--ea2e8f57413025052dac768021d281755e6997c22b7566ba81996482b42ab2e9.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T1w_softseg.json b/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T1w_softseg.json rename to derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0cf6e8dfa8 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9768--1c14c30afe46b751a469e7bdb51a81f75dd914b4501ae9c7b06f032d87229352.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4b1cd46517..0000000000 --- a/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9806--29d75548e22f059362c75578287636e3ef91cb936c9f6188a50292b9edb0c2cb.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T1w_softseg.nii.gz deleted file mode 100644 index 8554cced92..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s361172--65ac1db4c0e159d7d1131de2c49c4c6020ae89fdd125b5f4b673b692ff57cadc.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2star_softseg.nii.gz deleted file mode 100644 index fa4fe67823..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84870--795d76d2ae42df3f650e925e372289d85ea3e48ec155da870366411c58e4b558.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2w_softseg.nii.gz deleted file mode 100644 index 6eb49ba568..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213075--0f794ceb7cced9602635f0b8f203d21b377006441d82c827d956655b33ad609e.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 9227b18fc3..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39582--be57f42cc4de29f75e686087e0cc292748f7c5f14429e626d1b5b977b5c89e0d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..704d24610c --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39499--a075f73e82e394c58763c32f57b72e38fb80964a7b36df3061a9621a9fc67078.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 994cf7316b..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37713--c5288531083f8158f116f474c6a8e2d79fa492bf5ea1f246927f8e1ff3b40a21.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b6857c1cd3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37734--6d79884d02afe555bab5e4b7c2270cd13e342ee5eacfd33319f2209a1736ad33.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..20148c606c --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s361146--9319af732621b171025ed8beab837a5f7b90974fd2e80fc3190488af6ac85d47.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..305f0ef145 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84840--3c9d6a35722e99f10155eaaf5025a8f0f5785d8bfcaf2c763fe85b5ccc797b86.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6842c0fdfe --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213047--e1f28ddb90f86e6ce562800df3fa32043c2c6ba2b7bbb21dda229241c1378fd5.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2star_softseg.json b/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2star_softseg.json rename to derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..71b4ed3a63 --- /dev/null +++ b/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10556--90bbde414588eaa61d54b846661b9abe8e6fd2327db648d3ce89f3127b8a75cb.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 58b34d8128..0000000000 --- a/derivatives/labels_softseg/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10595--5dccdaade8e7e3d1606afee66fc3af01bad5b707a71ded40fa6b976e65567fbb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.nii.gz deleted file mode 100644 index 7c1e724e79..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s413325--aac29f02f545d32caf550b90fcc645d68eaca8e6761d285172fe9b076d24312a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.nii.gz deleted file mode 100644 index b2b8f18c09..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s132436--58b82971e93187e9d1698c5ede5c128f948ab1183c1e6f28aebcdec48e34f69e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.nii.gz deleted file mode 100644 index d33ef9dfe9..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s176886--97883a61d8b78dd67781713039d559813e36ea6c4a94b19aa14536b8d532468a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5601473fb7..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s49866--8af05c24f3f49fa817b8e8ba4e6a9cf25610e41a16e6c21019f04871eb274159.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..324e812695 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s49804--d306b7bc975ecf00bce11c9aba4c777c66181f545cedf2cde123351485434d53.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0d04d5db66..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s47721--0fd579413d375ba2f39989cab6d8676dbd1b823c6d383c0434944d81ae3de3b7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a5df3f9d79 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s47719--a98086de0d7c87c377c9001cb52c86ec51108e713b100e5320bdea8d4be17c2b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb178428bd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s413297--bfc57baae0252bd9ffab8246c23b0c6f0303324b783ddf3d53ffb09c25697f1b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6978242a8e --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s132403--8fb216e209b021ca6695d42e3a2f63b14972bc5e786e4b2f34cd561550175a96.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..36aecea5cc --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s176856--a4ca7a5256e590f5efaea4422ff206ec322098063637a6d8342d94a2d37adabb.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c9acad9993 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11859--b79a5e6f9e2a53c63d94454a2471b1bfcf9a5969a94640f155d25595dde82c43.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index fe7311352d..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11901--61f58b4a48e169f6292186b160a5e3301cc7feafadf43980b70f0c69b1af7f38.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.nii.gz deleted file mode 100644 index ca949a205f..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s413431--2fd2c50645a607028d0fe84782ab3ad30ff231a73d15c998f0cc092c6e36e86f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.nii.gz deleted file mode 100644 index 533c7684bf..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s130940--213023340bb1ec953c797fcf11cee921621b01c9f52b1c2b7a64b2ffe5cf7efd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.nii.gz deleted file mode 100644 index bc9e838d96..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s176129--32d7fd7a2295a82d1b723b4331133e626939fbde378757c03626a038a1e2c8ee.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4e2348bc86..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35306--f9b832c2981219594f53bee81b536f45ed5306ccdba523a2e67f4a4d559acb59.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1156b28227 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35343--c9a8efe77b46fe0941baa257eb075b95bf872e5fc2bc04db45d030564d46f94e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index efc4af79fc..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s33591--c3c5deb669d046059a8ff8419b558afb1be85bcabf6f0d8e34fd6c34a392fad4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0695e2bda5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33653--1e3232e3cc891d4306f5457d3e5212de4b6bc6430cac33f96f4ed85979a65d9c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f153b260db --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s413400--ae34117646fe5ad7587878ee1bf5e51553ff50a0f036945a9734dc5a02f8b55e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..23ddb86f40 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s130906--553645da9cb14b518827869072ad3eb033670b8cd3644ebccad5f11ab8ae5de2.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d8209e08b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s176099--4fd52108fccea389bdc5fead800100b8d66844fd531c293579ca5be026fd8682.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..80f94160fd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11178--a4f4868f88641f6f66ef0daf1d5b22a7bf89ef901f6fbddd097f67b866c2de27.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.json deleted file mode 100644 index e41d6ca48c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:49" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 73d4080de5..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11220--1a61df19e3d67408ca256022ecce5f741ae73e77e9e09eefad686b516507dd08.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_softseg.nii.gz deleted file mode 100644 index 1d3a8636f7..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423030--e6c6c6f4fa479592c12b87285b97bb2d7fed8f09fd38c4b3085f1c40febd5ccb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_softseg.nii.gz deleted file mode 100644 index 7429616e96..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s138131--99dba044355870d816c959f3a11f787c5760e05efc409fb2e32abf70bb7f2b3b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_softseg.nii.gz deleted file mode 100644 index 1736989d2d..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211297--3e3216f598df98bb90821895f16e4168b61d3bc71d2abd43a324ff5d9fc3633f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0337ec7ccb..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37970--e0027b537ff156c8ddc920cad519e18d882ee6c3d460a313fcd0808d7d3047b4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..89437cb8f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37959--b707911e5e1719ea2fe88fc51be1b76839fe75a651a6665e6f9d0d32792bddeb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 28380c37d3..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37447--80597e58350069fae245976b3f622decbef226423b905f936ecc77b4fca9e363.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2ad95940cf --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37216--60d9927696dd00bf724e39de6d6a4c6a3d24d69f0b99e04f5dda2e52895b0141.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4e437e31c4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s422999--ee28da6d31825f4935baca752a5320627081648fd3d7670336f481acd09528fd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..696fad8303 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s138098--0d3f2c73b06c01b5d4ec94419546fbeae17068be103291b4bc8755e925bc84af.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a458a6cf23 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211268--539ad13c6089b15070bf416d4d8fb81681947060e93cf0815f31906f37750b0d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T1w_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a02dd1e985 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12598--511a31e295e6f7c69a66c5d4b63a5da560eb6da81a93073219151dfd66b8c784.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c1f21cc02d..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12639--a0a7a23eeb77f842a45e6c3ee09012a7ea02edcfc9c9baf0dcc719b19ea49c22.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.nii.gz deleted file mode 100644 index 002937653c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s413033--9bca38dccf76a46a06608137e428b14295dfee27231bed6094ed613449f683dc.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.nii.gz deleted file mode 100644 index 3984377bc4..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s134262--281db29279c429707f973a902d47e086e642847d7877e886d7bb7c97481148cb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.nii.gz deleted file mode 100644 index 7c34af00f2..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s196862--c06b028b0f9ad1e025df04bf50e5deaaa3246101a62679b69bcfdd6082cd0351.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index ce38e881a6..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s34856--57e46160e164499e20fd6ca5d5c58d801ad1c18a367444d5e86e2cf2211fcfd7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6a6fc10223 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34903--913a197d81807386dcf24ef1cc49b2d7b0fef7579d10269667ef6b1846f44538.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4dfff00cd8..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s32702--9d1e3af933bfd9643498a5f2b66bef7f6fa2be0448ee73ac1d8dd78b95be84d9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..271acd9511 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32642--81d25326845083154ad49bfaacad08bdb21ebf49d5bca51b76c629b17d3f921c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..df26085c5a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s413001--5573744644bdd43f8ac23559e3292ec015091fc7fd5e6a0058e744f38e988315.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5de7aad9e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s134230--151d15d12564ba3d7158d4292138378df85b1aba0a0aa2b5818499c9b0cbfc5e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d618d6802e --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s196831--d26b2b31327e60786b8c22161b9d96a586e150574f55c277e355834739919dc7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2star_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7da70f72a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11478--8e667651be4d0a5d2686ff673fa371b49dca1242db31d2763b0af333e5ad2a5e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce201cec99..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11519--0f29236c3c027f30c99aec92f05b7a3b4df23668fa67890fe682114ec0be7051.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.nii.gz deleted file mode 100644 index e50ed0b806..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s408486--160f0fcd25969c7d0cb99f48cb66d1596ea99f3b0a5e952ea4ecb0a2d6b813a5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.nii.gz deleted file mode 100644 index ed8813201a..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s127888--58749e335f82980f81494c2b01d1819ab47ed5e0a870a18c19ecc7b90ca1427f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.nii.gz deleted file mode 100644 index b994f2b285..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s170728--978895b5f65b21f463e980c294406b215d0dac0654ce4ca3b82431cd10eacc97.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4346525ccd..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s33119--8dfc115a8fc14877c202c2a7490607ffd2a141f9018d5c6aa1d33b0e684768ae.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ed3afd7420 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33031--bf68619dcf42dd8e40821de29b0ac76bb7203f8a956b5f854d1c00f00e2720a4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1cd91bd8b7..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s32134--e754c215eae3e81f790b948d84d00975ad1cfb92a4ff4c27584c700a58c74473.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e28ad63ae --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32069--55f05fe6d8a37e8ba9b5da0eeb04cb1f2c2d7842a69493cbc8f225e801b65ada.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c407b098ee --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s408460--25ffb16f6d818e864803b66ab2908fdf628d40628d6a7ddd32dc45e174eb1ca8.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..06993946a9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s127855--b699d4e29bb5563ddb0741c96485984c06455a10bdac38ad6b20972eadc734c0.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..672cea9f92 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s170699--ae5af909740fdf0bf38ffd874f1b492cc7c75246574da664f4ac828d860d0cba.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ac9c9d275c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10706--d9e9798b4ba6d9c423c2a92d478a7715f034f9b5bcdcfaf7e9e15d9412d86d9e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 44d3044949..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10748--1ca3488dc6a3845d7bad6e7882fa238eb3d7a6d8c311b3e80a3b490512a79e9f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.nii.gz deleted file mode 100644 index 2ae1e88ad0..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s416519--1974964177cc1c729379124a3e834ea4a939f841076595b024b78ebcd7a4aeb4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.nii.gz deleted file mode 100644 index a2601d0cc0..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s136260--08a94f9927a20fbdea9ca7bd71c1beeef948a8848c5c5255783637dd9eb19ec1.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.nii.gz deleted file mode 100644 index 2189184ad5..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s174828--9c902bbab8ec01d9341acf469d6bccf4f2a7ade9019fb38085f46b2677aa020a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f1f93600ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36510--38e3b3008e1bc980b5cf77ca4350a041d7241d284c4d248a0ee16240686a6910.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0ee120a568 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36579--fab698082a968a0cca938b5112e3daeee7e59c6859a2b3a22050a850e6e0967a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index bf02a0dd72..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:50" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 841639c03b..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35887--0621a6c9fd216e961999f723c97a439c3f2c03bdd29bd71f2ba0b49bd06c3af0.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5d264ddd82 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35686--0c0168de565984b9f887202a6d1cd2e4257624a23a000e292e3b7c4701ddd869.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..eb36b72f97 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s416488--591021094dce6a6807814641501f2d1e2858ae763ef971e522c01107534b8a49.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5c39c9366d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s136230--369fd400561c1951d0d41768eb3cda68554b136af1f04e968f5bcb2d79325faa.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..743ae30ba5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s174798--e738867a07e7419f2472cc4f46dd5d8c5afe37b1b698514187cfb6ff183319a5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..074d42653f --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12309--99d39e6db13e29f582687d0989afe8b6eb9fabefe7203d093f9c58ec81b8efdb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 93058eb6e4..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12351--122fe6583babda26596e6b7fa08a0aeef4e3aba8872beff10a148eaa41d15c03.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_softseg.nii.gz deleted file mode 100644 index cf81db708c..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s418025--306eb92afe5708d3b90baf15cf25d2c239fdca7b92fdb43769d3623d6a879382.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_softseg.nii.gz deleted file mode 100644 index 91dfd1a783..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s136874--421a73e4e0203d1b31dfccd3afcd718ef39bddef425e6f9ae62e0e48ec0eb034.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_softseg.nii.gz deleted file mode 100644 index b70b2740dd..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s201674--03f1c1a323a37b6d04880f7f960177d71e87f4a8a8cdad65d022c73ac17d120d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3649870bfb..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36222--8d2db84c931ca0f645721ebe456b4d9a69e4f19d0256d774dc5b0b7f06cbc17c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0c9ea5bad4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36179--d5c315e609349af8bbe27cdf020ca98a7fcfaa4fec304383160e9175f60b998d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 888b74de70..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s32748--b6f9ede00869622d90595d3734465830988d997765bc20593f16ac1a4ab00fff.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4720db4d52 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32697--a6e07ac2d43b32fda3c1229491f99c3fd876d680293288731281e4845c8586dd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6d7907f28e --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s417992--c65c1ae3deb188a605e4fba92a84b587ad2f117b04ec8f3f7e0c3116aae9d608.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fff3411eb4 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s136843--5479202a538a79f607d4e3c8fab522cea12fb738fd6b197dfc6875dbf4e311cc.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..44af8a9691 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201647--6ac1738d477a2a6ac0c3b08f337d2ac8313dcde1cca694c6adb19b84fc729c58.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T1w_softseg.json rename to derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0dcfc612cb --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11554--fa83e70063415ccba97bbcab4a296a51f1f79a3336763b391f1ec471e395598a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3b2553802e..0000000000 --- a/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11596--ba4a240bf43367354eb35ea4d00a29739898f4e3537de46038c55585feaf670d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_softseg.nii.gz deleted file mode 100644 index 2e2d9a8354..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419260--30c9ae83d58c2b1be22241a61fe03a0cc10c7c94e8b99686caf568adf4c68354.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.nii.gz deleted file mode 100644 index 14c3b674f2..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55047--8652ee8377a7ab670326384f0c926469d2a1f0a468edca052a7e4ae0ae25a293.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.nii.gz deleted file mode 100644 index c42b755719..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183012--f4d6363dc10b924db330835eccd779e1417514bec6ef8da4e976b9e9ae9cb45d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 25057e8115..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38848--28630b3d663bf1c630ab7ef174637832854d216ed3ecc40473454c02223f15d2.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ae4262d54a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38805--3e28388dd54638cf69393a35486b66eb070715707bf615df312094a84266b21e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index d11cdc6740..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38759--0b97b0ebb3cf3cd6f08a71c22239809a56998e4a142d4e93cff5b4ffa3454828.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1a5a6462fd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38758--a30113923aad3c9dbc8b3cd5ad0534fa99eb573d968467df1bc6c96b165119ae.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8495ee02d7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419227--38cca21955f49642f386d03aa13c4a798b235585b1f3eb51929efb1f18fcb60a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6afd624c54 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55012--e2788970919c1b541d7d20385737555ae7f75614f18b65ac77f2a27e659b925d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..531dccce5f --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s182980--6b7a2d3749a0571ac8afdf3e9c476ed79c8be26c5022e0104bd68d59ebb07f8a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2star_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3f84d81b78 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10175--e77ad2664cb4593e86c26336ffc96a40695067ea125e8d67f61f3c52fa3021ef.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ce4987a90d..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10221--322ef5933f022dc7a79d600be2de78775eca3b437a5012b29baa1b3fb6a128d7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.nii.gz deleted file mode 100644 index 7fa1104883..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s415996--56d324c30e9b71ad30686acf49fb31e30eb9f0d6ea5533948edcf02e8e31fc5f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.nii.gz deleted file mode 100644 index d861e22974..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s52999--c1f78d6de7d2ed3d14ac049b2c1a8b06e4bcee2ce5a43ba68f3d5c4a184fc39b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.nii.gz deleted file mode 100644 index 054b95dbae..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180235--996e9435238ccc802c29855d9d534c1d27f39f06ec85b73161f9015ae4ff6e68.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 2cd624d9a3..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37910--e7661cd4ec0ac38e6f9478c7b127bf85c48f3b7ac47981aafb6d929587b265af.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fcfffc965b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37868--54b82b4d0c5c81cd107c514f5d982deb3a7d4b8f5fd7cb1d2006fcd299fabea6.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a20eb6bd02..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38346--3fb150464e4e77a585f54dc66314629199c61204af4048239fd6b0ea546b3714.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6a28c82cae --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38266--bbca84c264e3149f4322478fc656dff3424cc40382111c1a6fb98fbc2c515ca4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..716cd1cac3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s415965--cb75ccaed35bab5dde84ac42a6b2ce967ca96e7af93ee42001613482e923f70c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..03dfee3018 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52964--0bbd162e6cf701413ebd633ff6a4f8ee481074dc6ecc7cf010d34caa3a504189.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dd9f817ae1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180203--d0d655058730a2f6f38245836cb4ccb7a9958444d1db5b0700a923dab5c42ac7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..17de7ba461 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9336--677928f17ab30afbf1494827c52eea320842f588046005057f4e58707a77c92a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d799aa3663..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9382--c72596962a149e56432cb9876df15b279289554c0ae9626989819c04161dd25f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.nii.gz deleted file mode 100644 index 7921f3d66e..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423543--00c08e690fbcee0395e7c15dca7916d3976b14c66595f0b9b1b9a23114ce8cec.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.nii.gz deleted file mode 100644 index 54f9b238d1..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57304--2af7a38c2edd665a94e6d3b2783d0350652abc777c4cb96a1b106689b50b473d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_softseg.nii.gz deleted file mode 100644 index b5cb25adce..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206621--1b828c51a45a59866551e1c76e49ab0f942bd722d5a320c35e6c61d58b6325ec.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 7e220a91c5..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39755--8f79156669df2a58614ac300a37efc239fc24be6fe169cc537a7223a4c1f527c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..49a9703359 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39712--40ce518f442a464484941f8ce06c6c3138b1617f25f3ecca737c4c99039a6969.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e6b3b129d6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:51" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index abd9cb507f..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39654--11f7f9578645d01eda3e114a9b49bd92a82a221ec06f0e9c654766216f3b4bb1.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..32d98bfc5c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39594--ceb6166b2c78e46d665bfec9e12d9d252f147248cdc2a0dd0c79787e9badc70d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..328df4d5e2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423509--a1512b6ad0c4f28347ab4047d9c360c953dc3b8a28cfc00e9614fcd13a806ac3.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e3b45c17cd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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/dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206589--aadf0dd241c0e7856ce0ce6609b395808944bc8650e6ef6d08cdc802699b7f3e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2ef8bd2016 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10454--9ca111787324b9ac077adde15ca4e9e93d7851f88d06698978641e2d2216a854.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e74668cf51..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10499--f1e37d753ab89c26fcc4afdb088d587975641447dd0fbbe5e2da0fd51a3633fd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_softseg.nii.gz deleted file mode 100644 index 7d89f2299c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419473--9fb9fec245af512fc992e494d83eab129ac82fe8794810c0f8bbab5a135a4d05.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_softseg.nii.gz deleted file mode 100644 index bc6951d8dd..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55327--d42d48465251b73e4a7625dfde010a99c90f2155001b6026bc3953ac632849cc.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_softseg.nii.gz deleted file mode 100644 index 8612ac4cc5..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s180537--18a466207345fb17077c21ecf8a639ba9d6d6d9a916b2fc63a4429e3f8e6da46.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 21ca802854..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38586--b1210a90f960a77872d3b5f4c7831ee03928fe08a06c9079ab95103de9455233.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0c460f8ea --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38545--69133b794d9304c38227bc04cb59d1f9601c2bc0151d3c604c31c19b31762dcb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3724d2b18e..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38483--84610c54c4dc7aa77e8a8383ab2cf2f7b3c37689d2db7ba78417536a8e44317c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..328c90d141 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38394--7310d55f6c4ad3fe6f582c7b55908e54cc7547a6ae447415fac7427b2695ee6f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9be64a71e3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419439--fdf40d5d36d1ccd456f567b88807543e5277cdd97e8cdb4de5d02fa3daae2462.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0d6e4431f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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/dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s180504--819f590793d930d445fda60bf49ea68b9e206cc74b7dd7f76c5a26cbb7a5694d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..76a970538b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10051--15a4e9a7fe031483670e9d91130b53d5be32f002a5e4697ffbc09aa44597b90c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 0c408d14dc..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia04/dwi/sub-tokyoIngenia04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10096--6825c8c560811380ea5deb0ebb70cbfc2f992aa1f99e5efcf46cc27622e8062f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_softseg.nii.gz deleted file mode 100644 index bbca5719ee..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s413913--e59f2d08959e2d6b0c70d6e086b31e8c634b9cfe4d09f93101bbb87f427ab42e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_softseg.nii.gz deleted file mode 100644 index 5f2527d9ee..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s52986--cc309f1b4aeeca2dab5d995fe707edeed65a8bb779edceb83daa54d547f079bc.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.nii.gz deleted file mode 100644 index fc083585ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s175341--11a3f7dc92f6ed1a50fd35c3e5233991fae4f99fbd1e14bbe2bedfb9427f6e36.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5a21679a8c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37470--df109e7ed090ded45e7d482aa8bd005354a83e5059a19972d50db00f3600eb95.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f9bea13d3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37428--d2fe7641db0408a57b66c90c2f70a9837a376bbb683f5381b97a7f0fd3fdca0c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ae87209b01..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37485--ef89abcd7f842a97b153b3b23e3522c1921ad80dde76ed206a61deb3d13a3958.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c50e9bbc4d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37445--b9198dba25c208a7c8433cf03c2cbc6e9114acbf666c33e4fecf2c0d8b009bc3.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..46e25d0f57 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s413880--6f7bd77a95b9a005a5cb2ad59deaf4c463d1c74441c69561ff448e620aee5029.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bcaa378b05 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s52951--b431c6ea06c6eb75ec3734a94cdf6331581c50ae7c61d52004cb557a5f2c062e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b7354713a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0435aa088 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s175308--182052e1286ea8341bbebac1200e0df954fb53be7b3db6c68ecb425dfe50b01a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T1w_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e7d15c6ad9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9208--0f48279611272987ad06b0f4cd72c389cc960a211c520b2980cf731369e10074.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 99e820a456..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia05/dwi/sub-tokyoIngenia05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9253--8befce856d53d243def6192d3c27d5fbc40f822dc8513bd0a0c96ce1f0341b17.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.nii.gz deleted file mode 100644 index 095e60f25e..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s418895--54feb1399548e6d60b2fb7ab5a9f5cd3c3e7f5b09d0ad39657b362d2f5ae1428.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.nii.gz deleted file mode 100644 index 2dc0bc3ad1..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54394--4fbd97e4aa47d7a54d2afe22a129d9bf0585a1b3ae6739701ca87ec0fea14818.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.nii.gz deleted file mode 100644 index 9d2d40ef7c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181814--a7f2b6df1d0686bf8bc361c5cd7dfc8a720abdc41be4ca5c3e1c929bb27db1a4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 0a54c7f2fc..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38989--728951cc7a40d61fee567fb6696d0cba4d0ef698e9b334c9ad12ce3b1683da5a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..53cbcc90d1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38946--cd8271328d3498f049d62f8e6c29b17c41659469019e2868eaed0b014aa90efd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 570340478d..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39204--7da62510467158629781f2f4e0f7257cbf122d20aeb0b8e83e00ac33f72c2e25.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..acf456a57c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39141--149a202aa156bb1ef3b59ac4808a14273625022873cf7627d8836193d97a853c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a85b4ae9ac --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s418862--f6bf4d1d2da200caa33316db5addfe0d71e26a179b60216055d72b2215557037.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7000c9f817 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s54358--3e4ec00a5ee7272c9ce47d5930044f92d12bfa1bd4d8198eafd9558b4da576e3.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b7354713a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..474eb1ce73 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s181781--8e944b221fc7c607c996ff40e7df63539911e17b2f5d0b7e55a0b8451381b811.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2star_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..29a130e3a2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9818--ccf9489dd44c2b20e6f58e7c08bf889e811f0b87620b992d4eb71d2ec20e33b9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6af938881f..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9863--7029865337ac90d4b13581d64a7a44caa5f518acd25d64a55edf97c23129fd70.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.nii.gz deleted file mode 100644 index dfe54fe637..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s415967--6a6705c465d7c68191cd9b37f0ff0f4e471f9996af50510b84fcbc914d5946ce.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.nii.gz deleted file mode 100644 index f9a72c72c6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s53346--ce1923d7ef303e43415d74173804f1bfc964789be52e9617420e66cf62d087d8.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.nii.gz deleted file mode 100644 index 619b47653c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s177733--e39ff1cd7778fd511fb4d4df01d0855e44dafbdbdf12a40b70c1554e010c66c3.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 92c5e62eec..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37831--948b173c1c5ba37f243d9c19da7c889f5ff1f26d4bd8e6cc559363ca358eb0ad.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b7806ff0c7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37790--088ae7703be0fe04196cbc0f5e4eb89c8006d002cb3335d15ce6eb0cc5d6c08f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 56ada1f7cb..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37271--e6bcce3295eba99c0941f42859b71f7304bedb157ca9b735eeb8415df161645d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..33aae1f447 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37225--4a527687e52b868060fbd303db38af1185478d5a458c878490744a079ace8222.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b185c4f0f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s415934--a4950aec5743d3243bb4dc835aaa56e835b0f284a6712ca43064fcaf8aad796f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9237ec24f1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s53311--947b0f0a082dba78a60baab46cec7dacbf945f545ded70fcaa3a271b7350e229.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..8b7354713a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..67ae881ce5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s177698--48ba6715e5563c452dd289b8d1b16b8057f6fb3640f3f94cf484a64ac07977a5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0770785d50 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9197--505e2b5290474e30f5192ccd5abcbb0712532af7da83f269d3df47e51c95884e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index bbe3bd4446..0000000000 --- a/derivatives/labels_softseg/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9242--03026a0dbc303ea737e6b2fbae16192c6d1c863aadedebbec6a7cb327f06dfc4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_softseg.nii.gz deleted file mode 100644 index d5b2f2aa8f..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357042--3651a6bf84a4e32dc5be4c138dab82ae664debd45d60724ca9f5021dc6e64cd9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_softseg.nii.gz deleted file mode 100644 index 0db4bef03a..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84576--5ce8afcf4dcb91e89a2c5becdbd1212adb714b0f109976e0e61d2d29fc7c7a4a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_softseg.nii.gz deleted file mode 100644 index 66e472bf0f..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207225--adec9c3ff15b018d808108a65eaf28aec1d80908986c869667bda40efd318052.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 3bfb106c3d..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39258--5261ca133bdf5c151fca66e7c3d3309c0bd79720c423e2f3720447244535a6ae.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a887b0059b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39283--f4abaad9efcd5001ff5e917e7edcbaa5b7dc0b70e38b6173f14b859294ee6210.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index dedf7bd0ad..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:52" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ee31bbf300..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37747--dbf0150cf629f4cacfe493a6bc3f0e0571efd773f0408977f4ec7ace2ea4eb77.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8dc087906e --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37744--9051e32da7c29414dc0d35c06fd13327f8c194976f1bbd1d3070ae2d231f5c4c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9c559c7de9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357015--62734c7b7370fe1df6c17b56c273f62ddec15be13bea6cf712fb2f4840269dd2.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..776da973f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84543--505bd2252acb1eeed09a1c641230d0fbe4232c1277b74c82bce3eddc3eae452e.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d1c3842799 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207192--ad79ee094df2051a4f78d7300bea21844d1281dc535893f1f0efb97af6708690.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T1w_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7ee34a368a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10537--557095ce9989134797dc34bf7ff6eeea48a12fafa80184fca59acbac3a9d6156.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1ede96252d..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10580--32270c2e60662e0cdd2d31283ca846a5a339718d8e225d89352df79dcd9ca4f0.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_softseg.nii.gz deleted file mode 100644 index b2e2a66131..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353322--dcef2a22bf043049e68b034bdf2de042a60558926c8eb19cacf419a3c5aae7c4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_softseg.nii.gz deleted file mode 100644 index a9a3371586..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81413--978f3aabfa67adefb6bc81d5d24cee2d5c5b5fbe10a5ace359627f97b461a7f4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.nii.gz deleted file mode 100644 index d4d3fe0d91..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s199792--9e8567bf13a0c893e5e01572a5b4487741a5bf8b769024e1a701ced9576f3dbb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4bdb46e421..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37862--a71cf6e872352306db150e95dc503ccd816fd33b37dc4b359b5edcdd5daa5118.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..63dbb60a96 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37801--cead9816364719ac2a225ba1c8d0836a9b10f602abffe5c4f45b867dbfbd6fb5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 06ae613f3d..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36384--94e3f930dd8f6f85b0f986e8ff60314aeae0c651b85c62894dee30f8db329953.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f68e43762e --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36359--74a46c6668e8db622a69b36899c2e3422a201dc8b311b69f17e20be64f8abda9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2487ca1d6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353292--b30db78621a9ac4f407d9f7e83cbc3060194d509118cfbd403c827d068bfe481.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cee8a6bc41 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81380--07802bcca6ac0857e4ab6c28f6df43286e8fea66d172406582cfbf865a967acf.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8f90f26375 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s199764--fa348f54ce5921886c249f38867237b6178bd85909dea006c9ef9dcdb2c08ac9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2star_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3c11338a29 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9419--600eb6df49504e71fdd252c9092aebe773ca23bd551cd569a8931b3f4c3e65a9.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index af30ecac8f..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9462--1f698490ee8cec4a8ebce70dbf292d50c976008a2fa7f8a6578ee044ee0a6341.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.nii.gz deleted file mode 100644 index 173cf0aa4e..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s353704--a177d7490de06ab08ddf1b19b9c645e200cd2decd306a0e981c6aa2b05263b0c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.nii.gz deleted file mode 100644 index 600069628a..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80743--6c92a1b70d80cd49b0ba0b8103acf01fff46f0edec95d10096458a4da99d7047.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.nii.gz deleted file mode 100644 index 846c7f8451..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s182938--7e4f1b49a9055816a1a213b5d4ebed94e0efd61921ab41e160ae6a1a12c22ba0.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f9446b372a..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37531--9590e0ce5a409fa210ec4de69beb4fed3b926e880584ac4661182460a0e40d23.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bf938021a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37514--d76e819442aa6f33af3b3dd61177814f01c7a65361088e689aa09f21012c9b31.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0dadc141b8..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35583--48cadba441c796706cffe035dbcc0c8846f90958a377da430fdf780bd603feca.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8aad54dc4b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35505--0feb2ebda2ec2231ff4f0f6e7450cd4639e1f58df79f688bdc19bf7112a54b93.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d39a186475 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s353672--68b2a0e38531adbaece272c08db452305f73767edd1da3d8cf08ba788b118ffd.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9580fc9949 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80709--cba1c252b5203638c6e6a8a2ec1f1604f9ef819c02a9a2ae61a7694ce8a30237.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5af1ea66a7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s182907--fb1c628cd57de1d6885afcdde844057dd5f97d95a9030286160f3bad0a1ba272.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0e9ebddbdf --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9611--03c4873c787d5646db703f78445862239e3ef0afee8284b063bdae68d304693f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d1844b9d08..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9654--af3beed180638b524e5147a0226d602acaa9e98d048c4ff144fc873fdd8e8ff2.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.nii.gz deleted file mode 100644 index 2c2c81fe38..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s347491--10c5a6ed7e5f7965e3118821667d47bd61de66f054315e42efac6f3a0fbf9488.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.nii.gz deleted file mode 100644 index a530db1bd6..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78892--6985cabd38ff8eb389cec6067f617316cb0bc185335706187ec83927ac93ec32.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.nii.gz deleted file mode 100644 index d7d4d7e2b1..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s178674--c0d26068461ff57876e5259b154949ce65f7eb0b142015eea15d75bf8dfdf3b7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 64801235cb..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36694--8143ef365dfc45cb4105c97e98d2e2326ac6ca9c11e47a64754c228b47592d29.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e14a876b21 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36692--204ef1943f5bf0b0daae524955030f6f0bab08fef349a8257f54f020582381db.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index b0a851e561..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:53" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4ae949c695..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35633--18501c4072b721e58c1367d0d011ef723bb596cb014f1b8f2b5de66079479d43.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..334e0c2da1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35559--e71e7b0fd76d3f84d76cf8a3c367d2465d3584525f67ce8daa3e864c85ef6df8.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..54a40765aa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s347461--670a32a8f0c385381a6d2560ef5d0a8fde638e8c6a6ee388853e8715e1dc79cb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..487a29ae65 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78857--86b4e375bb1c6289ccd4874379eb8ce5d736fe10f89dbf1b76359d7157c910ac.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c176850c57 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s178643--a4de43dbbcc92c3a5acfd748d8d69bdc5500ab168d376803029f14277d176450.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0ef2bc3309 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8892--dfe46867875c9c0695c5d48f4f37ac05286a8a8f2455a0d416cfd09bab14ae03.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4d0354066b..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8934--d164dd33cbac9c62534a1c5d9a7cecdc039076aa23226de92e67133f19dc897b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_softseg.nii.gz deleted file mode 100644 index 08aee4ca7c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352947--3bad478f3f144a8fcfa579bc9037164bc85893cca886608a12d05c11217ef289.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_softseg.nii.gz deleted file mode 100644 index 55ec67158b..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80212--6d48a79082b9500dc497e71895041b87f1392f107fe742ad3646ac11f9503001.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_softseg.nii.gz deleted file mode 100644 index cc7a5aed20..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s198836--c22e6943ce702e206b4f41512f1410ced481dd765bd9742c13510af1b3e45c08.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4724a11f3c..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37226--2b744593c7e53ba2ec9f4ac88cb89df4b7ac189378d72814a5ac2f10fa185adb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1c88934788 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37161--ae8759265e4e0ecae8ed67e6ea1aee1dc4a951785242b0446e7b0358eb475822.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3f14818238..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36612--f4a9fc8a37d3c956a93479225dc47e9fdf6e91ad4d3a076d237a0b453c22a4bb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dfb7a4cca6 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36522--b7b001b7695206510322a29770ecac83464fd7cb6442e021a4b64b2802ee1bb1.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..14d1443ae1 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352913--4a3d0af91afa50a37dd2a0e9398332cb08f161bb34dfb7ab8300d962733fd6fa.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..059030a85c --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80178--31e2471e4ce60a2bc8f96453aadee328f8f199434238b4bceae79d1f3939be09.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..990cf6fdd0 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s198805--93932963cd87188b12284985139b10bfe544e1a4b2663b06ac45e81890af9fc0.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T1w_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0a65804d11 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9349--02858e040c371ebc140dcb0e4c2e25d8faf24c9b5448d0ebc281e792823622a5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 3308d44796..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9392--30557c70e553d9ef4c7107eb941bed58ec10132c702a5229243f7569c6de8a38.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_softseg.nii.gz deleted file mode 100644 index 4d7d3edf59..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355953--7cff25a2e41e7767d24039ebe7e21dff02042fa520ac5ca4c500487a289ef2b6.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.nii.gz deleted file mode 100644 index 27195509c7..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82987--7cd896f29afa7aa38c9e01749b7b04fbdd806d0c5a663c5f036b749723e720fc.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.nii.gz deleted file mode 100644 index 08e40f8441..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s182963--83aa8e227a298ddf17553f7b78ae9b032e133cb439c9946f8d02b1ca1cc907fa.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6cf50aae99..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38590--d1eef2e411f7e8aa4c3025383b7ddc3fbb45d7678963a7c14a6dedd06de1652f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c0aea5e949 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38552--f03b549a551062825c560a402cbe7400ffe16ffbbad516d6cdc481ef91065e1b.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c85a3a0d44..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36742--f22ca413126ae7ed48d196b6f33ecc7ad18562c3f34a40ee68c1f4d9df12d421.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..48b5e43a94 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36720--3fb4ecc76d938e614d15b59ad827c6011d1603765a70ae93c3e5b563a4fa6ddb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d8e39534ae --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355927--71ae4947defadbaa5ae962764adca74df9987c83f8b97574186cb4b1a48206ed.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fe1f55be4d --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82953--7271f0373279807256c3368c21c22bec032c2095c1b6dba78b32f1c5ce6e7769.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2c588973f5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s182931--8ae3007572fe3f395ace774367794a0f1dc306120276d1bd9df3dc2a793f3f45.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2star_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f5d486e1f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10214--d4162629a7e21dd893a003ed97f533817b5373540d2a64e0975266ee9afd4d72.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 738edfc5e8..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10257--9b73ed7934c953bdad9510d883fa0b21590c8fbb45508e94e41743d004d05867.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.nii.gz deleted file mode 100644 index 73de4fa552..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s349026--b2c3a65951570ba45d07ff6c189263b9d9750f56d935adfe522d1369d42abdf8.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.nii.gz deleted file mode 100644 index 04a6300bf0..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s78446--e03bcb8c1a000b9196d69083067f9a9ec57a4d63edbb9ee5ef48158cb6947c8a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.nii.gz deleted file mode 100644 index d023ce03d7..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s179340--7a01c75f9a262371b611643074f9c3f52186173c3c75a54abef2f2aed7b8645c.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 1f44dc88ff..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36818--c13e6ba74f083839423487201f713912527e1ca1721c0a3c57ea269c81c9d147.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ab5723247f --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36836--e010181bc028011a98b8b1c0ae14c6285a82f7d3659b801e26dff0e550199859.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e64aa6f215..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36183--0b2b890ceec0dac8c9758ac66df41f21f6cb167b83a8a1ff93992bb65ee73128.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b9e94ed575 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36147--a2d1dc8b74d9dcd2f400325c39c976110b8eacd0ba2030dbbfb9dfdc3baefd9f.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..48a11ded6b --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s348993--a8f1e208fca298f9d24b8d823d2ea639c8f0c305f230f79ecb40190c9b1566f5.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dba65e3794 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s78415--04b62b074c46f9796c3f1f5d6e41f7e11f6c953e2aa6c453d3af80f82554b25d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4b731079fe --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s179309--adae24145260eccd42b1f349068b0a3ac6e3a4358e4e369229dc80cf40db1050.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_T2w_softseg.json rename to derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..65590b4335 --- /dev/null +++ b/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8736--2fc244192201d58a1faf179d057e597c0199fe4dc6509832cfa7412fe351f350.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f5e89d3797..0000000000 --- a/derivatives/labels_softseg/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8779--87ce0e28a6b5353b841a4f933cc65cda255a6e8206e78c36ec7ad15f1ab61f00.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.nii.gz deleted file mode 100644 index 7c0a9774c2..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s408705--e830419547bd1d422a3fdd5e9ca232a442cbccf741941a28b5ca0858dda0265d.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.json b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.nii.gz deleted file mode 100644 index bf78e593ef..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80463--f667ceffe1df41736da767c5fdff604ebba61c58e31f035adfdc23e436bce1a7.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.json b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.nii.gz deleted file mode 100644 index af292f9ec7..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s171243--313b682297f9d5c2fc2ff396bcf0f000b038184d03fb12c3e17b1c77dd064f37.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 43780a063e..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/anat/sub-ubc01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38712--863db1f2e4ab9b13435737545c444927e65da83f7b6f2682d5b801c42f12c4f0.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 403cfe250a..0000000000 --- a/derivatives/labels_softseg/sub-ubc01/dwi/sub-ubc01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9953--12db68ac91c4331606c326b0ba9833692a8af5d90d2d4003979894ccfd738fe0.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.nii.gz deleted file mode 100644 index db9af20410..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s445448--992da81c3f608ca6e2c41403eab1ff2912d4d6a1c5d6f9d4ecfe1e2a10bc51c3.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2star_softseg.nii.gz deleted file mode 100644 index 11318ca1e8..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s93400--33fe8a3bcfca81fb6ff7d16e19c20f07253a75abb0f3b5e1e5a408f9aca9fa1d.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2w_softseg.nii.gz deleted file mode 100644 index ee61c17d07..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s227194--71bf8db134638ddb394bc10c57f54f8fa5e84e454f5653ee773f05e76e5bcaea.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index b375c2eae2..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s43485--5ca573f53f7b02684ba0637bb31106afdf79ec4bc7873a26624e6111a8f59c28.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..93c896d391 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s43451--e05fb4bdd72a2605dedad2d0a4f8e84e59ab6162450769c1ae7e71a2a1f87884.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 66beabb179..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:54" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 0d18cd4e40..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40790--67048a43bd0467e2210fa0629ef7f1837249986bd4b0f1299ab85b6eba054488.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3235af6818 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40761--387da70c9cf6e4593ae7d02c586cab439f277867ce6dfdfbff8941c8bd9d8c83.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2035eea835 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s445422--e24b54358bca4cc1954d358b7ba05c525d04c337896047c4fef40ff35128c605.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..70a573105f --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s93372--3d9aad4961d0b4b079456c61f9c7cb2a9f0ab7999831d1f8d538159943703f73.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c94f844bfb --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s227169--42cceabd5d1687436ecfd8d391bca9f7e0704c0b118cd6ca52753c9966700ffb.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2star_softseg.json b/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2star_softseg.json rename to derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f4f8cd737e --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s13854--ba87650d6abd3647e8ae5ca712d21aff9075c886915843fa802df18f6cc57e3a.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 55f1e48498..0000000000 --- a/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s13890--7b9db11961d6caeb82223677953226e023f42cb73bb57354539b352b857a0ef6.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T1w_softseg.nii.gz deleted file mode 100644 index f2cb51c5a0..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s429583--3e6beb9909cbff0e9de1ef9184388323249c0980a5ab9f5a3bacb3d80c1119f5.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2star_softseg.nii.gz deleted file mode 100644 index 9ded3512fe..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82864--e8a22914cfda57485d87d2c026b2e44cbfc7ff4e4a3bd3f851dcaefffff1947d.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2w_softseg.nii.gz deleted file mode 100644 index c235a67766..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s212157--67b29de87ba6fd4032ad0636bba0ff07bdf88fdd26db5fb6deed9844f2cb1ce9.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a3a74f9013..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40335--1f2aa052bce7ba9a62427e4041ae03becbea1acdb5e4834548020ddae57ed4bb.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d514101ede --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40303--921a967920f5ce423d7a41985403440b91d6fa9965af1a55ff77444889f9f461.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index b11cc9ecc5..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40537--ce70348214e49e4ba128f72a3320d56b92a689fd71ae511b86b5d6f00f089514.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4a026d51f4 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40444--4dd5d774a36aaa5351da03cc1331d37d5c91545c08a7b40aa912707876e79b43.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f0fb94f951 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s429563--96e960097cafe4ee65ffd69ed52dcee2b85dd4b77979f73739a40a5dacfc0900.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1981671251 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82836--3d236c04454900fd034a9712d195024242c523accc8d2cf9f8c2ade3d82f42ec.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..51bbd4aafb --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212131--abef6dabcc61cb3f374e12c79d0def052e5569c0f90f645bfdb20c1628cd1b08.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2w_softseg.json b/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc02/anat/sub-ubc02_T2w_softseg.json rename to derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2e3544bbdd --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10492--2088d0739bb4112612f9d1b1c4d98e6c1242d86d3f62fb37ebfafb43dd39f2cd.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 24e5d60734..0000000000 --- a/derivatives/labels_softseg/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10528--775efc2d18cfeb62a266b13d9cab47d4652e6293c385772a7de381c4ae15b7a6.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.nii.gz deleted file mode 100644 index 90b8793a97..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s424854--b6c45570372cd7fc375c5de0200088432af8e160110c03a5507f671746245ba8.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.nii.gz deleted file mode 100644 index 4b2eb16d07..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83123--d8e2e7fd11f592326d890c24e3d17534c42fd4bc1411310939c2ae5957b71f29.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.nii.gz deleted file mode 100644 index 7c60e033fd..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s207607--f1f34fe6b0765e1d77248d48f5d62397e1845d8293d37ec5f1a1cd38c96972f1.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5cae971967..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40687--b758314d5b41d8f0a997fbd24f7dd55e959ae258cf360b28e355e9cbf2523128.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bea4e30d4d --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40653--e5b5f60c4ae4f8df3471ca9624b8364baaf4244cace324ead11aed79376ba3e2.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 6b6e6a0a7b..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39770--9eb9fba05bfc9d9bfc2d817dff7e00ffa61493f424eaae1b48e96cf8b6b1c1ec.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..810d243e02 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39785--2f8878ca10a946d80fe0d414ab90aa90d1ddd29a3b5b197d89816e6a40f71c74.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..93817d87f2 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s424828--805c5aa7f6ab9a729b6dcf3c20e8a511e3269d326354e7b5037f09e667d156d4.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8161fcfb23 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83098--4eaacd35288e658d59a95acd1cb3e46105371201f2bee5472bbfe4ce33422706.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..96698924d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/anat/sub-ubc04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s207585--a683190bf923578dfdb54d5357a449038c1e37f982d53679cef456dc9dba913e.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e03bf7dba9 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10481--3069ea08f6f7adde02904e5c9748f77647b1e7c8b5fb643016ba2968ed1a435b.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 2e9ba8fc4d..0000000000 --- a/derivatives/labels_softseg/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10516--33743d02eea4550c46b0574fd3aa202d490bd6a797ddef6bc0711edc12c71c88.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.nii.gz deleted file mode 100644 index a5d957eef0..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s429102--61cff8af52d7260a5cb8459682fdb6b3aa181c6200f0b44863796ea6785f22b4.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.nii.gz deleted file mode 100644 index f1ba727082..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84806--e92da7455075c40d19c5fde345784c9727aa3c8255cb40996de2677d3d528288.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.nii.gz deleted file mode 100644 index fdc67ff9a8..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211273--223df4e57685b5a1a26af1a3f44b5b773952889e2af64ba4eeabc03a805161b8.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6bf33f690e..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40288--9adf2dc955be442b32cc3e6e6186b20e88e4aa229ca1c42f9865c58c57e72f08.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb9408eb5f --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40255--11a0160955e903a7b946529466bd006829471b992be397514b9f2b71fe99a6e2.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c7f534cdfa..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39598--29de606dcf3864e22cf01e75c4e844bdfbb74b6dd2cad24e0b4e2df27b8913c6.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7d0a56f62c --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39563--cfed27b51df58070124bafaac636f3fae66bb6daa07a8dad92f4e5eed447d944.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..75dca276b5 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s429077--a971e22fd274ab169469aafaffc1641214d043c475aca080d268c997ea39bb56.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ecf5897144 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84778--cee914850bbde28dd7be3c904c7c7c8fefe0d96db564ec3111bb8c769eeb7c58.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..64952e08ac --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/anat/sub-ubc05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211247--eeb6e95e04ed647d752def9cda6e2877af34f954de932a460f87f7d626fa284d.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T1w_softseg.json rename to derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..41e7ebd61a --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11080--935f04ed76770ef1ea99aac12d3d198224a7ff630519464778a8de0748c6d915.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index d33fe7a445..0000000000 --- a/derivatives/labels_softseg/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11116--3f85637a5566532b54fd6bdb8a176573469cbac3e96d1f68519a2b2f975716cc.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T1w_softseg.nii.gz deleted file mode 100644 index a4a364c9d5..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s422651--ea3cbd62fcef35eac0c5418f8730ff0e277a5fa04f82883ff42c9e0baea808cd.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2star_softseg.nii.gz deleted file mode 100644 index b8b6118c29..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83059--891a46f4439a343f7f1d86e1db92aaeacbf909b714a392a0bc0128923ca0ecdf.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.nii.gz deleted file mode 100644 index 7fd8070445..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206491--de082fc9a22caaa66a2416410856bb53c112e19ecc69d02fa9506dfc175df60d.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 5a1063b203..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40053--ff0bb7251cb30c148cb2da999cea5aacc36f69076d03ce56897f429cc1f4fbeb.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c9eef57d38 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40019--45360165b7ef3647c8e4aa971c6c1da5cae3386fcf817949664af53f1520c44a.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 19c3fc2686..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:55" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 9499fd016f..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39222--a8227135df1c1123315d0f1043973de690e1213e8548156198653c44298a88e8.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bf784963b4 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39245--7c4f600eeb7737ff5c2145937bf37f7eef5eab25b306b4d2365fad2f5f08d048.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..b56e816b28 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..112a2a796c --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s422628--cc2806e18ae9b6c5a27937e54ea9808d709506d472d789aebd6f6f7a2fb0bbe6.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..0c44905d0a --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c9cec425c2 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83031--9706be0f01d000b91aef6f7cca3033ab51396411b0ab88a6033d3b30c8c11843.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..197223f7fa --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d749a1c257 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206468--934885f0c7cd50a04004d81ed71123c6208099a65cce87b4aae56278f58a32a1.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T1w_softseg.json b/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T1w_softseg.json rename to derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..828df3a3a0 --- /dev/null +++ b/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10665--05cd5a6fffef4fd299b1854a6cd7d6662593abb180c090319e22babb14e0a3db.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f5f3e06f23..0000000000 --- a/derivatives/labels_softseg/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10700--3d7630993634cd96f90c59e8a0822c1f5f4e4a75c9bb5b6da28247724ef148ec.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.json b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.nii.gz deleted file mode 100644 index 8c8331fd3b..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365044--f3cf58ed077e2c340adbe73e1ead355eebe64ee65592811f89175efe574c9154.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.json b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.nii.gz deleted file mode 100644 index 36e76ba930..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86296--7fd754d132dab6bb96438f165ef3df796a536f6c1d8257ad1a345f403898078f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.json b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.nii.gz deleted file mode 100644 index 96d9cab567..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis01/anat/sub-ucdavis01_T2w_softseg.nii.gz +++ 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b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_T2w_softseg.nii.gz deleted file mode 100644 index 1c26f84d4f..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213592--b30927abf3bdf1e4a5c3f11452be74cbe136214b6bd60b67e021e398e906a4e6.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index d0b630afd3..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39101--5cf2dff4a0031cedc57e8d414bde490a7be76959929d418a255654e5cd16e96b.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e3d246cb78..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis02/anat/sub-ucdavis02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38707--1b8445d620a1cb923e36e417af4a922c45848613afb3805672b4ca67cd5ceca0.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.json b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.nii.gz deleted file mode 100644 index 05ed87d2a0..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s373170--e4e1659bb5b131499fbb931f23ed193f294ccc46d353c1635e77c7db6d7d37c7.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.json b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.nii.gz deleted file mode 100644 index 434d9efde0..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s94319--ca1e192ef2816e0488eac3177cf34e5988f0c0b719b04abdbd4d6fbb4d1cb992.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.json b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.nii.gz deleted file mode 100644 index 33f4394570..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s230089--048de3c201e35395698cd21098168569dabecb874137fc23f4f71feb201d0b29.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f6f9b1b48e..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/anat/sub-ucdavis03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s42738--8f46f3f8aef611587f284ada17558b1bafa5c7ed1c61cc13cb8993e1f4081716.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a889a4e4be..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis03/dwi/sub-ucdavis03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s13309--9ebc3dc4d69b976913d94f22b311acd431a9f7560b9676c0a06f0851ebee38e7.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.json b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.nii.gz deleted file mode 100644 index 057829201b..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s358395--4c29f73803e4339422114820fb29f05c2f109da94a38f0cb82a30fef438c423f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.json b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.nii.gz deleted file mode 100644 index 2a11b8b158..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82859--a04729050b5bbc148a71d02a90144889daee406a154d2154f53709cf07d765ce.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.json b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.nii.gz deleted file mode 100644 index 29adfd5f53..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_T2w_softseg.nii.gz +++ 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-/annex/objects/SHA256E-s38366--56c09a2c594e87d930c143f54e44155d526d60b79563dddfb90e60e05b4ea758.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 7c2183f204..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis04/anat/sub-ucdavis04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37266--1bfdb36feec216c05664c9b07b80b058d34855f458e200a136a6ba2482dff909.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.json b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.nii.gz deleted file mode 100644 index fced95ec89..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s346393--3477175b727cff35729df27b311042faf85f560152da29ce9a3c01a32259215d.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.json b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.nii.gz deleted file mode 100644 index 38acb40ffd..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s77425--e58ccad424c0e8e6f570e3b54ef26b639f77249e28c230addcd3ac03617038fe.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.json b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.nii.gz deleted file mode 100644 index 251292035d..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s177223--a9d46a2a635baf0e26b9b6c24b7ec5ae23d12f8f2c97684ceebf393a807c0d0e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6513cf5d51..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/anat/sub-ucdavis05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s35898--9cbefa31a12f7cbf303f7b17989fe6e40886ce1b23f3ededfa61e6a088aab923.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.json deleted file mode 100644 index 3edd32e833..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:56" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 720e09e2fa..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis05/dwi/sub-ucdavis05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s8598--26e7d25f3444e50bbca89b648c0b5e0b8bdcc3e96cb3542df8cc043972025751.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T1w_softseg.nii.gz deleted file mode 100644 index 32b3aa6562..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357926--d73b81c63401ff7d6d35256a59cf34461cb7281cce26ef10131f237d6ca63cde.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2star_softseg.nii.gz deleted file mode 100644 index 7ef8a9c4ae..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83848--95d5d0a0ede2ea2e1e883a598695c33ccac4cd9c6a623cff8e3bb3dc1be26677.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.json b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.nii.gz deleted file mode 100644 index 2d7f3b2646..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206285--58742bf601f22139384db2efe19f7b2110d72fe2d1d47aadb5465069803db6a5.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 8f769eef5c..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38562--466b6c7976857f7eed5502e27fe919c672e4e75c362eaaf576699daeb02fc790.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c934f01b0a..0000000000 --- a/derivatives/labels_softseg/sub-ucdavis06/dwi/sub-ucdavis06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10524--6fed73e6f402cbba1ec5fb501a764a5b07c8eb585f182b81eb8543e3fb2356c7.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.nii.gz deleted file mode 100644 index 88da332d7f..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423087--e17f21d759714d615cc0b3beabc2aaa5eed1f437cc0753d843e6bf1d12f6f236.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.nii.gz deleted file mode 100644 index 591cb25b16..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54193--ac7aa3fc70cf1807b0037b1f13354b0f654b849111ac5a3716ea6797aeeed59e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.nii.gz deleted file mode 100644 index 49cfc1e479..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s183074--6592245d74beb5ef85e28a3a6d304b9e7f33841639b50c64ea159824767d4f89.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 86cd931b3b..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38803--59695b5d4256635aca4418d07329a31c4257c2427f5eea7a15aafca838bbed45.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..33dbe70e18 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38772--8590e81cce8670275a27ad2dc0ac507aa254b3a54354c8b6d6b841c68d49bd59.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 8a2a78de3b..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38740--86f1fa8bacaadfa95a04dccbc07f7a050954e3216363e6c2bf0b1ee52c9058a8.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..adf3fd8cde --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38709--b59d443b1bd084a4f6677989d30b41bf8999479eabdaa1b18753a2597d3e1cec.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9bab82f458 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..14ccc76b05 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423061--e6d15f15de7cb589e50cf681a03e9210afbe1bce2a26b9ff004b7d29b1485c41.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a127305914 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d883bdc0d8 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s54167--5e143fff8b9b22ce8355ee655d1d0db809e63f8b624f6818d7534a1581d8e9e2.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c1836a8a67 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6b4fe99608 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/anat/sub-ucl01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s183050--617c0cb2d4e73bbecf27ba89457edce220f61a23120505ed138e7dbe9b79fd41.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T1w_softseg.json rename to derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..318352fbae --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9617--d82a4a313ce55ab8b3e674d43f1c164af5b73fdc14b3f958bc77d94f6f8729d8.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f74d406fb8..0000000000 --- a/derivatives/labels_softseg/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9652--a2a75caa93068c7236364dc62b775320cb3bd7ff11ad2e66491cf4a000e5a4cf.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.nii.gz deleted file mode 100644 index c55bff7cf5..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s431530--93b1ef764afd93760438441b02bad35d95116a6ef86195f7f757ea75cf4ce340.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.nii.gz deleted file mode 100644 index 4a20cec0ec..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57191--7059f17cc38f69971f5209dce97098e218071fdd44489744198b37387ac1b9b4.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.nii.gz deleted file mode 100644 index 31cb1596b9..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s191110--23050a702e4b2defe47a1afe8b8f7ef3a733f9f9b7e8a92dcab2ba728165bb7f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6ba630b25f..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39881--d385f32643947bed86f515d4afed0a7588dbf1d91775cecfe0cc652db56d1ae5.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e7e92cc7fd --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39849--751a0799f0d994e54e77611c3faf7568f11bb8c93613d6ad2da70cc54c435714.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d83729e1ff..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:57" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f80f6d8b56..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40001--d286e0fb88680977c238e2657fd5e6192b01a1f3df00dd71580d13880aa23b1d.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6ea2125ba1 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39969--0abd2c4dd465dce8b82541c9bbafa19f1baeaad537c0ced38b88bce09612d8ea.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..9bab82f458 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..84293d9c3c --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s431508--0a0c5ce40ff2ef3a00544c46c7041729788634bce0b2c1d167524964f3a78053.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..a127305914 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..695e9e9340 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57164--a6a43bd59934e0ad389d78483b19b3d63230c26fa68d7308582dc36a6dd35e76.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c1836a8a67 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a0d86bb4cc --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/anat/sub-ucl02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s191089--106e98737d090b7b8af68fb1f69f0488fa4ad606ae9f3d4016087b63076edb5b.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4547efe694 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10516--0b19d34fd5a51dcc5a933765a6b5875c695acca0e41af3c73f938d2184fbbfd1.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 56d7ab4788..0000000000 --- a/derivatives/labels_softseg/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10552--698aab3e765207db53c491a653c72698be990c46d3558ca29fe91f9e7b7bcf15.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T1w_softseg.nii.gz deleted file mode 100644 index 782baff12c..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419831--6821bafb52b41973277990450c380c201bac805ab021d602d1cca2cd74ce185b.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2star_softseg.nii.gz deleted file mode 100644 index 7d43f3af11..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s55659--677d6419ea738eb52dbe2ecd21b903cd88f5e4c0007470c110402b110b2cf63b.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2w_softseg.nii.gz deleted file mode 100644 index d2a79a5f4d..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s201208--404894bb0b61428379ffcce2b7e662d5f10cfc9fb47a3e9db94135857adc82e0.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index b43ca6c81a..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39257--2323dd91c28007ef0fed0db8f7e57c32653c862eeb1abe10bdf70253c7291fb3.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6d3dec5d6b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39226--e95d1bd8dd7a7c55dd4e659b1ab5d35440abdd0826e4fb3c2a78c63127692629.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 53dcbf131a..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39445--396c7e6cf7d33d3404e21f41ca11bb152f6cc09f995131cb3a281e662c03b7e5.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e7a5df5d64 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39413--8a6847cd2a0493dd73073fdb19dcd0946cba30d0cb1fc577420d52568a5f0c0d.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..61d3da24fa --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419810--c2c0ef21ddda3d8a67cc138808b4c96043bceb97f461082e4f47e3a3f1605407.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b450d4191c --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55631--58aa7ca1e1ead06ec1d72e763f2528a6fb6c7b8dbf4e075fcc8a4408e2cbe859.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fa221df1e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201183--f2928ca29e794772ac465021c17adcf5f4fd09f2ca3fb0921652982c74a40fa0.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T1w_softseg.json rename to derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b453dd199e --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10068--c988279dc96abb2b7c629545ca09548e983787a7d9bd4d9f71c9ca5e52173f57.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 5733e7ec56..0000000000 --- a/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10105--385084be00e6786d72aa47c4594368dbab4483db979994c79374088823163cfb.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T1w_softseg.nii.gz deleted file mode 100644 index 233196f9f1..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s420115--a21300a0b3e0674daf5ae38dec1a994efb92be00575a4c623571ff78040d5a5e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2star_softseg.nii.gz deleted file mode 100644 index 1901320a65..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54267--b33d435724602b8226714b5254ebf5d44b0c31be70378441f7ff43b60ddf7180.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2w_softseg.nii.gz deleted file mode 100644 index 8bfb2115a7..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s197602--8e2bc47e3490d1e2e965b72a721a5f2e6ee9f106446347f4ed15c4b565678185.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 55dea5807b..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38048--bb14cc2ea2c15aa9a86779c4ea996a1eed3893dd03421367c232ef96a4025175.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05282298cc --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38015--7599de00d8851b6fc24ea8e008aef39cfd09b9c4a531c3abc50903e0fe54cbd4.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index aada0d09f7..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38355--89b8d411a1d596f8fe0806c2af91d6927b118cc3d539fa9f9de48c29911f3190.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e68c9f7d36 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38322--ee4065f9c15a257799541dd466915e1a3e6a838609c5d26a34e8f9c10588e516.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..34a5728191 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s420090--5123551a4e34df7254257e4b7ba84961222be4048d2b53e7f2b61a0936df1807.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f6a44cd98b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s54241--1d6d0e4459b193f32e9561069100e560c66a3ceb4914fecf4f2dd05e6fcf9ffd.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6cd72d0986 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s197576--5a87c95454c9e3e31f84da25ff45f9e38726bff1d0a5c2e4adc60413c959391e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2star_softseg.json b/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2star_softseg.json rename to derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66bad481d6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9567--542956c1041ce6c1fc6ba5467e7eedde20db539109efcc4d5782bb04f037e506.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c79852a029..0000000000 --- a/derivatives/labels_softseg/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9603--fe8815380b3913a0b6387c9863002eeaa85bf05711d21c370e7276d6c0c26c0d.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.nii.gz deleted file mode 100644 index dc60a4bb09..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s425570--8a23d81b130e76ba2cad39739d2aff4cc04c559c9f95a36dc4ccb9b4fecc0712.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.nii.gz deleted file mode 100644 index 05269d1430..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s59466--060be5a28132c209b701b47c4d98c1661557b720088bd22b3c46bf455c8d19af.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.nii.gz deleted file mode 100644 index 1d994fbcc6..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s211366--5cb9233a3f5dc267f14ffe4c1574fe96e5436eb29c9a607011293af2f478d796.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 83dc88b0ab..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40901--c0f6716cd76a874088ad54d28791ed544d1a867537bd1067729e88807629875e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4c95bb972c --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40868--551fc0e66d485bde217be5e0e80cd3242449bdc74431d8a5a172e93c64869178.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c77d9c002c..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40548--70d00c160c49ac2bedb305b0e27fd13aa768973364c39d3ed02a43d71f9bd60c.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e4b0b132df --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40517--e316e1373f395dd6c62d40da8ccd37575313f30bb0ae17fdbf05270879502bfb.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1a360a621 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s425547--da25f4151f251962545e0da9b5eb6ef7602b8f761ff2480eeefd9c92e2ec199f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..be843ce162 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59439--2fc5ba68803a464e53e29d3c6a8b86d1634a135d81f46ebdd276e11cbae6af62.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fac89c903b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/anat/sub-ucl05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s211341--877c4b0e74ba4e09fd8d3a2d0486b83b72b67a53891f1794c1148194d1e2678d.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2w_softseg.json b/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_T2w_softseg.json rename to derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9b7a4d88e6 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11377--2e97539e1a58babb2460b7f78cb01449586f3c32fb0d23b77351f35c5d1e0385.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 992cba0892..0000000000 --- a/derivatives/labels_softseg/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11413--f311c4cbb31b322b85dacfb2883468933408df22ea0c5a433782d6b353ec141e.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.nii.gz deleted file mode 100644 index 0566e0a1ce..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s421170--7f4aedfd38ca6d958758bdd6b2b7b1781ac7e3d5868172f9383707b70b7d2d82.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.nii.gz deleted file mode 100644 index 5ee3f5631c..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58070--533e63003cb65b4c5dffb563c010caf4e30b2936468cdbd5f9f0b85d24b17e78.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.nii.gz deleted file mode 100644 index 849320dd6d..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s201672--8fce1aaa1f17aef43263694d52c2300c73b637e38a36b4f22880c1b2d58ba779.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index a00ed95281..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39709--f4d6ac4d0cd4533cfea99d6bf9b199fad834cb3045425970c0db2da5f8a8fbc5.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..fafdc6d8bd --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39677--b8a814f2ed0232752c2d34cc0a88fc4617541948d57b550400b3d1d7124b4199.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 1600dd5cf8..0000000000 --- a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39129--09d55e62bf64b3e2e1d0a525ca69820a91ccca5cbe9bc27357ab3a18e189794f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3492b05044 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39097--ed1b4e04eaac101bf817fdc182fae5d505f896c050dc85020ac925ec9d352f19.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..612c0064ca --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s421143--e7a395bd7e045a651932b5b364c220129e4d41246c041963995285bc63304f13.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a515880995 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58043--2762802637df350c37c035563cf62c9e0e3e80d8b61e84de28dee84b90ab402c.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..39bfb89a4b --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/anat/sub-ucl06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201644--c63876aac40b37cbc60ca9da356c9512596b9e03803e8569c7f84cc1bf6e49b6.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1f984996c7 --- /dev/null +++ b/derivatives/labels_softseg/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.nii.gz deleted file mode 100644 index 5dba7b303c..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s359165--c839289d4e292956d241c8625a1ffd1bcc10bfc4758a64c406f160b6cf5f4393.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2star_softseg.nii.gz deleted file mode 100644 index f1f64e5b74..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84390--83a4665e8b07fac8d8262510656de6fe6b3a24e3372812a09bd4de0aac1d7dd5.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2w_softseg.nii.gz deleted file mode 100644 index ccb4e1658e..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206038--19c8424ce4d9b8b815c4e42138afef69b40859b27399aa4fda53103a9300ed19.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 53d3b2c2e8..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39006--e86fff6047739525fb66139a1006373508b1f07d92df2811325a147266f64bdf.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1b9e9ff7b8 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38959--e15c5fb0524fd2f268f33be50bff81d71663a17973778ceb57bce7f0b903fad9.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0715327c27..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:58" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 00fc479294..0000000000 --- a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37976--56c9b5c04806f5abd237d1d0aef2f73f85557e383b1f9d0c6522acffd875f96c.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e81c5a868a --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37927--9b3a08e540aeed32d1021feef3cb7cfb11683af1276e2711895f7ff1e231bcaa.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f04dfb1a6c --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s359142--2c527db0d041a30c7288e21298654d44fbc1f54c5bc7e359f6add81b31daf5bb.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7bd1eff1d6 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84363--bcddc9c37d02fd1dd06a789bfa8cf38d5f93dfbd977811915aa5bc9d30afd43e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..bb7d511c01 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206013--7a5ea0b4e2740d565b3d2351cb72b8dee50f578695279d4a508012011d1aa3fd.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2star_softseg.json b/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2star_softseg.json rename to derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e11a6c1b72 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10340--84069b3b3805d698fec581fa61ce088f982bdf86c6846cbd3d762287017a1d9f.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index cfbd4434ac..0000000000 --- a/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10376--bb5fd330748ffdb6cf083595acfc2d2ff9f8976d1762b559ec611f3d6d0b74ba.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T1w_softseg.nii.gz deleted file mode 100644 index debf08fd85..0000000000 --- a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s355355--69f04a3436f18cd9a05c8b3b44861a904b4819fc779cb1a6c3d999f0e8544f57.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2star_softseg.nii.gz deleted file mode 100644 index 9288fd6eea..0000000000 --- a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s82792--844f69445d4e2548c054277e131bcfd654b2e705682077ad9c1dad8c5da80498.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2w_softseg.nii.gz deleted file mode 100644 index 2f33207ed4..0000000000 --- a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203096--edb2defb4a00ecc89553502e509e04b20e0546e782ea56008d0e3791961a038e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6c09994ebe..0000000000 --- a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38465--4666da391b7cd4937139880e300b18bb3aa6734e1b0ad43b72cfcd1a012655bd.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..e1743a8d13 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38445--dc68e4305fa121e5538cf44962de65227a2dd92e46feaa862c85105884c2854d.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e24f50b4ea..0000000000 --- a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36705--1a2733bef9859afc7a0813cd7247c5324f15e80ce1929555a8f8e760bab3585e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9fb176aa45 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36739--b0f10aae3aba313063d0c5166ae13106ea00d6411cd663302eb94eb695d01bd3.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..383d80f095 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s355333--52dc0cb6bdfac0bfb9792011d83a6907bb86e687c67668d88037aafffae51ea8.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..59420b4c5d --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s82765--3e61afeaeb68df49496fd35c61a84b744c33df13fdd9fd24c13b9a8d4af5de6c.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0f029bcdf8 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203075--42fe638a067f278bc454686d599b28770200101fd63111c3172f55809a0e2e02.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2w_softseg.json b/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf01/anat/sub-unf01_T2w_softseg.json rename to derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66ac9242ee --- /dev/null +++ b/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10094--11f249ccd78d3f3fdff1befef6f6ca5877f0d42d90449bc5cbca7868b2cc6a70.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index f1c4824e0f..0000000000 --- a/derivatives/labels_softseg/sub-unf02/dwi/sub-unf02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10130--1d6605bae4f06fb0c2949a19adecb6301f8c8879a8f463bd023d5f1ca7072668.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.nii.gz deleted file mode 100644 index 3f2b57ffb3..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s354131--629f5e6e8e2786e9c0310b20b41636d9641ad44b21683eb37921f660220dc4a9.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.nii.gz deleted file mode 100644 index 8b9266bec7..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81353--4ca3e09ee7950d2c65ebaf0fbcfdd65bae331b4bd176408fe3791ba1bb78ecb4.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.nii.gz deleted file mode 100644 index 27cb765520..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203348--eb759cde941d367d6bcaae557791f9eab2d3ae25fe281ad90e9020f9f2bd08c9.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index ce25d46140..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37897--dd81b010a2ef75926c8cad5b32549ec833fbb31a06236dd9f556ba7d014ee3d0.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..24c78e1121 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37956--27d1683c9140d3a0a79be547d9b2f345f6b9b727ab9a9448d86ee01465123416.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index a6a7f2b939..0000000000 --- a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37528--1aa8d9859fb43757ffa5f97427b7e1de0079e1fb26b310b6a513ba2cf42c725f.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3574c51fef --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37448--d077907ba1bc49b2598ddb3aedab7ecd6b7dd6dd0cce48ab88e657082c4f8749.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..05592a18b7 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354109--c28e6f8c431a99db386c1d2aad96947644480b76d1f2edcf8c7c32c823b891f0.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..82348de5c4 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81327--53249ab9d624486719dd08aba2b6af5efb5d3ca4413b192173f0f5359244f792.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d646767a01 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/anat/sub-unf03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203323--84f7a6890ac580a10301c1e9b19533ead62993e07b92f0c0724bf17e1bfbf92e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf01/dwi/sub-unf01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cfc4c9f644 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9498--16dbfff21baae19904bbe296ad81a5e8a5e417993dd8fb5f87fa071cb5e32c01.nii.gz diff --git a/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 7c643ddc5d..0000000000 --- a/derivatives/labels_softseg/sub-unf03/dwi/sub-unf03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9533--4b9e222bfa3ea71646e42e0b252bc9ba730f041d625209b43a9a2c5de102fd8c.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.nii.gz deleted file mode 100644 index 360acfed1d..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357589--69d9fc10717029826675eb1dcbbb3d32c364da1bd2c1504a9060fb56c0668eb6.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.nii.gz deleted file mode 100644 index a5cd0f54d1..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s84416--8dbd0729017599f03531e7bf66528a29bdc1bc20bcfbef813ab23838343ed038.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.nii.gz deleted file mode 100644 index e994e3b82e..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s189233--ffb48820f96a1af1baddad0342ae3b9da884683673f009f47f2cd4a3df1cb9d5.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 850445c53f..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38648--9c8072b4473343b389147d0c19a70780297d8b00e845aa8446fee80c5e92149e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b2f86342d4 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38658--2faa4baea97e1ebc83ec732e71c32ff44ce36c441fc700ece52910d0362bb7ce.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 90f7df4911..0000000000 --- a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37031--28db44404ccb1a06c6eb1cc853939f2c3f93ab304a836286fda03c3e4e00144b.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d99828749 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37019--4a0280b171278ce449222f8b87e1a46c87670a3b54d77e51fa67f7e328715ede.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..84994f773b --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357563--bc87acedde591c745f304e3aa4855463f9d082a4bc9eaf0eb7b5ac30cd979995.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2b857dd92d --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s84388--1570bcfaf07dfc910a1e9f2e2c9a11aa34d69605a465e5ec5726f8b940fc5cf6.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..207b759b4b --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/anat/sub-unf04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s189210--be141660e6951b21407314949c98d8ed3fc387bf145abf8f12a2653989e5d4b9.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T1w_softseg.json b/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T1w_softseg.json rename to derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..48e7eff48f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10296--cdedf653a4a0dfe1c410dd6f63e11e29ace8309933bfb0992e088beeb2a4dd89.nii.gz diff --git a/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c8daa17330..0000000000 --- a/derivatives/labels_softseg/sub-unf04/dwi/sub-unf04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10332--8501c3394fa4cf8bf3dc428e0b943fc4fd4bb46898e6e56633a29d45decb7fb6.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.nii.gz deleted file mode 100644 index ee76722026..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s352329--0e309433adda7106d7dc066a85b365dd44a9af44600ea765e893edccc52d93ad.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2star_softseg.nii.gz deleted file mode 100644 index 31300f03e7..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s80177--c48ccba5ca6f6a12ed85a474c4471d9972857c968e909a434a139bc0e9aa6aa2.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2w_softseg.nii.gz deleted file mode 100644 index b16d71e61d..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181719--bf93117b4bf11a395cd04e292f4e4922c666be4b8fbe49fefad0014b4cd72b08.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index f85df0afed..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36183--8b5dc23a0d0efcac944d641a96e4e8f8b8f182dbf732d05e41863177db0515d8.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3a6cee4216 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36179--70ca8551b6a4374f214fd50fc282deb3d7099c793b87af5b578f76b76b415cd8.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d21aef3049..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:36:59" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3f29de266e..0000000000 --- a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s36143--8a03f69647bd840847a2cf3dd06681c5cc31f02ba37e23404181afb436dfdb67.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..9bf25a531b --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36128--44e113c7b7b88ef71f55352a7af1756f8260462cdad94b6f733a36d837dead00.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..078587c56e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s352306--fb8791a431827d6e9dcc1c1a4e4e37f8cc1e77d003492c43e7a283942ac5a629.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..56f082356f --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s80148--6dbd6cb2a4464c5da6cf6e83a107d81cc2d393a7ae243d130558794b9e77a6cf.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6eeba8a0c2 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s181696--5599a229c1d4bd44ae4c30b366d161ee73bff1bf4232df14748d47e30ed3f890.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2star_softseg.json b/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2star_softseg.json rename to derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..c2eb84a2d9 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9221--c8bfc7621bf2cacb21f2132496acf416220e8cb09ff3289db43f9d1c9affb609.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index c3b0e4599f..0000000000 --- a/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9256--c44def15dd885be6fcf06f116ad2945d2b9739b39633743b65ad88f0ccc4eed5.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T1w_softseg.nii.gz deleted file mode 100644 index 05d83285c3..0000000000 --- a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s357409--81ae66088956a68047541d7087a7e04b07f13cb58ad39a3cd663ff55448ac51a.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2star_softseg.nii.gz deleted file mode 100644 index 45049c7d96..0000000000 --- a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s81267--8d7c9f74104b2e51c96f0e7c611009c43056f25780ce76aed87be113b727bfb7.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2w_softseg.nii.gz deleted file mode 100644 index 373034bed7..0000000000 --- a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s200085--3071c8a12bb97223a2b7e11a540b66ab5333d2aec9fa5b0b7806d387536eb1cd.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 973a8b8346..0000000000 --- a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38778--7b1720222e1d63a3bb7d50bce0c4774366bda2f9efa0434ad27d69731c709fec.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..85ab3e6697 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38788--d3f746ec857bb5d0324fb689991c0548bcdebef4a19a1c4a651dc9ee4400292c.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 3c1248dd99..0000000000 --- a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37455--4c85a9034a7eff9e32664f2e10cb2a5df3ca8aed42a8a234fa731b1d596cd74e.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2c7d052b81 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37484--25bbc797085017d2bc9ac2ba5a1acd8d8080320f11f6ef3c4633970f0325508f.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..ba168c3c5c --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..987323333c --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s357386--73e1ae9f6b629b60f68dc18037c1537ce24989bbf2ac82340dd14e6af4c1db27.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..097118a53b --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s81242--2e78cabfd24a9fd71a5c0242b4effcc1fcc635bf91d79f98621ebdc92d1bd9c9.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3d98c21266 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s200061--99ac107a86f874f67d3678a4cf366f768a055e274ce422124c0233d380c44959.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2w_softseg.json b/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf05/anat/sub-unf05_T2w_softseg.json rename to derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2d2b157571 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9344--f05b4b07f138b31b6627945301c245e4797b05d972819679ce0d3777f53c46be.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e044e888fc..0000000000 --- a/derivatives/labels_softseg/sub-unf06/dwi/sub-unf06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9380--b79b82b961d2c4280fe835da416a83c01d5005c1e527ba9661326202bf465a74.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.nii.gz deleted file mode 100644 index 8a9278c1cf..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s358141--e608968a5a14dc2d28b6d8c0cac7726d68cd650167418294dae68e220a5d3e6f.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.nii.gz deleted file mode 100644 index 51f7678bb5..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s83152--d7f35a971f54853f3d769e2a962fa27595988be58b4614d7a719b1b3e889ba21.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.nii.gz deleted file mode 100644 index be3574bfaa..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206078--0c5c0ab5669c370f11980d332c84fb189fdff85aa24286833b39510438910720.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 14592be8ea..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38136--9629e5c16f0316933fc04e2891aaa65a47f1d84982d36294765fb25a7f6f3004.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..66382bcd9d --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38149--84cc9c2447b2d3d32a9183613aa3014331ba2deacd8db02c33a148894934edb8.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f788c0c5b9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37342--271a06dcd1c5bf7b87ac3948b2e37d85e9c95825a3f417a83c67713df87cb85d.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6f04503519 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37334--85a4ab92931e7def8ec0db43b1b16f8b045194cccf9f938c35553d5ecd094f75.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..ba168c3c5c --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..98da5fceb3 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s358118--f28c7a6afb7bf16cdbeaf69f907b2283ac520db4802e85569602b37ce727fc7b.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b1d47e5f1e --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s83125--03de85925fe8e0b6776d90c5e6cd76525e10f343981a3e6ca5d96ffa8b16aa5a.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..080bd4d63b --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/anat/sub-unf07_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s206053--f99da348128f04276386799a03eed5e126a302b6a5dbda554aeddaa0d95012a5.nii.gz diff --git a/derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf05/dwi/sub-unf05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..86857ba528 --- /dev/null +++ b/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10021--52e0bceff6a6704a048524a0162d2cecc22e6df6e26c8b61de3cc60474ae96ad.nii.gz diff --git a/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 4c8f1254ea..0000000000 --- a/derivatives/labels_softseg/sub-unf07/dwi/sub-unf07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10057--653fad381d90d26541869e38cf3243763f6d094ed59f88a9c8d22b931f2f332c.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_T1w_softseg.json b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_T1w_softseg.json deleted file mode 100644 index 16762e94c9..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:00" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_T1w_softseg.nii.gz deleted file mode 100644 index 3df375cb87..0000000000 --- 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b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6d8662289c --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s358305--45a35a45e314441b6180812850715ab3120f7832466ba5011fb5883ea77fe3d3.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s209936--234b46d109e4bfca3518c5ea3fde32f0df3516764a0f0e55609e5fe7d6b6deee.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T1w_softseg.json b/derivatives/labels_softseg/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T1w_softseg.json rename to derivatives/labels_softseg/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..3cc620d93d --- /dev/null +++ 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b/derivatives/labels_softseg/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201550--f75909b0e66918da06ab99063f6c316618a89d5f2efd339e3ea74db9e27a4c87.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..8c0308c9f3 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12421--c3aca179e6dcef30a0c5851d81a0bdc9a22ed15fc4e59c2641f6d92faf1b4bf1.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index a9140a1cde..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron02/dwi/sub-vallHebron02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12465--224f1f112248f0599addded9c547e430a9be51492e89117a1a14eaa9b7e13e91.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T1w_softseg.nii.gz deleted file mode 100644 index 638ac0ca9d..0000000000 --- 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a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.nii.gz deleted file mode 100644 index 4dd5418948..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s86835--c85bea45b30b606a6fb16582c34d0bf63abb4bbf189bdee889114dbf4f4d2beb.nii.gz diff --git 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b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38554--acc27d2a9150853706d0307a911684cc8e181dba0deffbbbd3859b83a970b792.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index ecbf86d6e9..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37926--0896b12c61ceca4228b91a9abbdab7da417cf1ba8d38d6ec3697d687c66cf145.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f5bedd3d97 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz 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newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ac23ae4327 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s354686--391b9d5962f999989d005a5f601f4f25944a1fa7936e26ac3caac95211866bb4.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f12e0fa441 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..37a0accbbf --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s86802--f2e28f58cd9a0ab8241bcf823282d62e37dd7f12537e1ca7b29f6b8ad4ad5f64.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4d5d061f63 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1a2f0ace21 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s204524--ca889a84b730bfaf8d31a9ef8f9b77037fc4f579d447576d014558276384ed14.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T2star_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T2star_softseg.json rename to derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cf579a0a8b --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s12951--f417f3d988b75c76f33689e3c4a800846f728ba7780610a39c91ae483246aafb.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 0785336870..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s12994--d88d370b5c68053609c48c94934f458601a7214b3608dfb731822976f720c6b0.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.nii.gz deleted file mode 100644 index 36c6e6c460..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s368707--39bc7c46b2989163aae4de12ca9c58daa72297d1748620fd30cac8ae22ce2b9b.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.nii.gz deleted file mode 100644 index e93f08041c..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s92785--e346ab659033db9a49cf6174048465a9e03a315eb0cbcdd5db92893713103aa1.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.nii.gz deleted file mode 100644 index 3a9885310c..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s220497--bfa433719c62530c1711a227d4e08040485c11f52f351a695aa17be220e3b96f.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index eb4fbdcaea..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s41792--315c04780e19a312ef479657c5b0ab394755237df814673b8e5301757e50c494.nii.gz diff --git 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b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s41744--24864c2fc2236b8d12579477eb161d17298a3f55cbe2bdd5d73b7bd25e82d96d.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 495d9e3e78..0000000000 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newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d020f51a5e --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s368678--8582dcbb16cbed960ffef4b61f587ce63daa5bfdcdce9b751976816fc946535f.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f12e0fa441 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a6ab747bfd --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s92751--bacd2e84e817984b5e5b780e7fff7aeb091f8ee915b3208a924e6e45684861a3.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..4d5d061f63 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..cf799fe304 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s220466--c6159bd00f1606bac2b29a6f204dea87c4c945ea513514eed44cea249bece495.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T2w_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_T2w_softseg.json rename to derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0dc48fb0a1 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14640--2ac0fb13050cfde0ed7237b57f0785439d0d2fbd8b6cbbd851aa359eb63821b6.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:01" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 43145722e6..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s14683--37a12fef506cd60d974da06726038fbf0db28713216549755d33840ea4d83d60.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T1w_softseg.nii.gz deleted file mode 100644 index f0096db179..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s365363--0dcb0866e322c5a39fe2e5f115661c56ae317c3e0350d5f52a5d5e8aa5b4a3b7.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2star_softseg.nii.gz deleted file mode 100644 index 9c642ab215..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s85313--d98c8e928fb90733a492334f30ce49263a90a2ded9305296787b7bb1cbd89687.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2w_softseg.nii.gz 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b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 43b07b0fd9..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39134--47a8640b86c41c672d8d3bc9457cee395f6878823136f097b78813a90c2b0288.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..f5bedd3d97 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d8c657cf0e --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39070--23fe3ec4c7222db4baafacf677d8531c8c9b44bbd8e72c935c8af4ea6e2b2294.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index e911b38d69..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": 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-0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..69c935f011 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38607--d254e8da86126fd388d3d933e8152696d59e2d5fe188362f07356fc6158aac14.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..91c5eb3ca5 --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..666b067eee --- /dev/null +++ b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s365333--5808805e7547a60aa66529929b9807841b5a72e172f81ae6aba5758f5b7ae7b4.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s219949--91d22d9f31ac74bd803f87a69c939fe9b5887fbb4e73eeca8c208f0e9eafa084.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T1w_softseg.json b/derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T1w_softseg.json rename to derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..221ef3f858 --- /dev/null +++ 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a/derivatives/labels_softseg/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 9f291285a4..0000000000 --- a/derivatives/labels_softseg/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11926--88237b9d1c7ceda067e6badb61eeb40372724e00491bda64cc9b6f5340e4842a.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.nii.gz deleted file mode 100644 index ff273364f3..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s426516--dcb2d2a0a5d062c85b8109393816216e92932b135e998d897188a61813d7eb43.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.nii.gz deleted file mode 100644 index 3a3bd13c84..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s60033--7bf4edb667eff6ff3764194477b19f3b3f0e45010ce6edcd29f49cd1e02f5307.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.nii.gz deleted file mode 100644 index 25e0446ec0..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s187987--8c09b363038169bce89ff41a7e273f19b336020dc362db845dbe852d42ca67ef.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- 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100644 index 0000000000..3c9fa9d5d2 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40780--6f9f185a3523329ca636be8e62cbdba739f32893b1f63be82d82d8357fc5e759.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..91c5eb3ca5 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git 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"2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2686d7a269 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59997--4b046e074ca34e5bac9fa48e9e14ba91bba232bb7edee090e50b851f40587ea8.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..746e64424f --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f9d6acccbc --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s187954--3422eeee0c8065d31af324f6d43849a52d40f83e44d0475f40d7936c4e3f3935.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron06/anat/sub-vallHebron06_T2w_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1c81444b02 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11533--7e2624bb56e0ae76026b2e071d6a4c0cc361f50e431d5e71dc7f56901b67ef4a.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 506066d5de..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva01/dwi/sub-vuiisAchieva01_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11578--2302e2eb8c371594d0254c25a3e00f52d68533c1fc06ebb8e79f162495167f3d.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T1w_softseg.json 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b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_softseg.nii.gz deleted file mode 100644 index 7d9b48a108..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s59801--671b228bb9e859b022c55347f9d03dcc8397ddfe2b2e396c3d82bfccfccfb480.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_T2w_softseg.json 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a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d247f901de --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..10f6490d9e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40908--fc7394922cc8eae87a31a0fc1c73cd9b6e88a033ea7ea4292e2086d77081ecb8.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 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a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..746e64424f --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b5e2f4f1af --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s212273--1673acc4ae9ed777a93a2b18a2e4dab50014d974900e0896c726a528913554cb.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..22f146e283 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11354--d1d3a1e3d55988cd91c41e2e9705510da6755b938d9e0c096728518b79294c4b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.json deleted file mode 100644 index ebcdc52a0b..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1f037243c5..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva02/dwi/sub-vuiisAchieva02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11399--ec37396e8754ddd15cd538383bc7f3de93eae3ca2cacaee083313cc3f4df1774.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_softseg.nii.gz deleted file mode 100644 index d55a30fc96..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s426012--587ae716cf53291f4b01090dedc53311b70021cd5795499d699860ab0aca4e4b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_softseg.nii.gz deleted file mode 100644 index 9a42705e7a..0000000000 --- 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a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:02" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4725dcf27d..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39999--dd7f649d18c7621cd4f00dfd5d1263ba96cdcf154237daac14b5051fdbdfa06a.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..d247f901de --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2cd5dca1f0 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39956--ab64c548d078a66e7ae091b005f596e27205901be8e06bfea5119c4eb724263d.nii.gz diff --git 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100644 index 0000000000..ca53e57f99 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40201--183b7f0867c6047e868ae41fb2fac918e1c0ab4f0b616b5149e9831fc1b5f56d.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2ccbfcf9f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git 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"2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2354b0af8a --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58442--d0e1cabc71ffe682f9a5aa97cf06f91103010aa15ce9cd253cc5aed1ca7a7962.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9debc010f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..7f1cab1b24 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s205743--3ebd64a028528961cef7cda82f0ebc6819b21f83f8b8678d15f661525e655bdd.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T1w_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d57d081797 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11038--481504450c16806495a3faf7ea067a345f18260bc1ec4a3754600c8384bf99a4.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_softseg.nii.gz 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b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_softseg.nii.gz deleted file mode 100644 index cb88ef1205..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58522--6948c63ecc6eeb4727d1120b947498cc54c12c89fb8c7812f82913e6cc70593b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_softseg.nii.gz deleted file mode 100644 index ce1fcd51d4..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s203912--07c62ce9c209e9bfd571723527f3f07b31475653b21d0fa1fbf038ea01382d22.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4863edaadf..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40804--57096c7000ff980a56fbc3a2baed957dae838ff1039a7166fa66fb9ccca068d2.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..10252dd753 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40762--1d02189c84eb06663ec6f34a42bc998fc8e38929068e4d4e3242e88760b61a99.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - 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b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..711dd5162d --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39800--64b0acaab35fab680815c1cdbe240b308ab618d160100839355551e89607b3b6.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T1w_label-SC_softseg.json 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new file mode 100644 index 0000000000..f3c34504fa --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58486--8a3b256dd653f7d0f160bdbc1a6d7cfc0b803c66fc2e034dd5dc62e0358ab3f0.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9debc010f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d59546c2e0 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s203880--d2fc5afd2859e7769a22ec2880cb61f3825882daa4bdb2dd73946e65d1e65c46.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2star_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f42ece0f3e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11152--c79cbb99344c7a3f2f5adae8a020f3f540673b634052412395dfe3228b6a64a6.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index e415c0dce3..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva04/dwi/sub-vuiisAchieva04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11197--470b951d1245320d63399ee4eeb1446c226ca602b80e8e84a20b6ce5c7da8214.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git 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+ "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4fe06edbbe --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38689--9ab71887ee8e487d76cfc7d4500d978c48b37ac3ec555079f55080211fa178b9.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 4eaa7a544e..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s38542--6f8219142863453b884546d32b5d099be6ecfede3d7645e0579071e1d13cc31f.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1966c3a4ab --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ 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a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..30156d8e9a --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s55109--6ab5d52e774ce3ebd3da289c81550374fc979202f9795aff715d12b90ac7e73d.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9debc010f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4f65ac5106 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s184139--e256fcb399b9a5e0d24eeee331ec6fd6a901848da50d73ca2fbfb7e48683ea89.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_T2w_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..067956499b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9820--17cd74b256a40f58699e1d4fc1f28b3e382684b1bd271d674a9de27e7b061748.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index ff66c2e6b4..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9865--f637d720d74348e049114cea3fc89da089d9abc4577db8fe3648302113e35c82.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.nii.gz deleted file mode 100644 index 73b7e0e7c1..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419129--4ac8f91450aef83fba730ce0c894006e8c8145609122bb96f9421cc588be89a9.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.nii.gz deleted file mode 100644 index e1691a2a49..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57961--874518f2de744f9866464ade6478af742036b216975ebd68e39e074e914713a1.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.nii.gz deleted file mode 100644 index 6aea215b0f..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s201472--ec595ad3f734095f89305b9f098504b4ba836ae9ef21ed7d8f78555868b396df.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index ba75afd063..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40254--42ac55d812bf1456ed0cb446f8ac2abe6a9657a1a807848eb0a07031450d287a.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..ed021e929e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40212--b9660ebdf435dea63718820a6ef4d3c7fb3a86a8c1131928cc30730e82ffe53d.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index e5f3e3389f..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ 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100644 index 0000000000..f2748757ed --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40197--aebc60ff3bebe647242ee8c0cb4ffcd140ed7642fab23415edb6fd8e8ea8667b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..2ccbfcf9f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..adb52d4b24 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419095--ae255d776f4ff547efb83b50da6a6e8e0cd526137b7672f6972923f41d35f1b5.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..053bd33493 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a226d2d8db --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s57925--8d719371260f36bc7857aea61fb51d67cb12a1df7b4215257c7e0131a421cee4.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..9debc010f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d1f5f4e7bf --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s201439--5ec5ae5a57c05878c3069bfc68c1c0ce1feba91a4d16f0049a5002953af2b171.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5303e68db4 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11040--40835178bcfcbc7d4eeb60aa7baacd845fc7c126eb7d8d04a83f5bc020b10391.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 652c917330..0000000000 --- a/derivatives/labels_softseg/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11085--0ffe548cba5c32f44102616e1ba71442267f1c3c98fe2701a3a00d7b97b2bd35.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_softseg.nii.gz deleted file mode 100644 index 9a8531da76..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s435705--bc5adbcd4b4a96cc96125dac5100553c2d741f24798e3218770e3ceab79b1758.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_softseg.nii.gz deleted file mode 100644 index abb82c5cff..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s61909--da4d2c4d322d309ed0491c3690746be717ad2777cc5fc3a212ba110ee44e2655.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_softseg.nii.gz deleted file mode 100644 index 0f94aecdb4..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s213948--6907a3a998f1666818f132b93458ecda8f30d2b5eb3cbfcdb4d62259b665a842.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:03" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 962a80449d..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s41456--33bc86e9fbc2a12f2928ba7cfbd7f9d63a7f36a076fcab573d953432a763df97.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d7feae2881 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s41416--6a9dc250f96f51ff4fb168a9f1a45e6c548c86cc378faa90c8000c3cdfaa75e8.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index d5ddbff332..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - 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b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..0391013769 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s41567--d621ee2937139692e98ed54f1954b29cf5b446c406990cce85d1c9005f20e750.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_label-SC_softseg.json 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new file mode 100644 index 0000000000..311d2fef09 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s61873--bb9786911dec5efa994f151d0fa06e928c4f5700294766105ca6cc9f4f1c69e0.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..1237335345 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..970f35b03f --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s213914--decbf6ba56a180bdb6817786b2752760b718135a4c4231d63bfaa720da121d94.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_T1w_softseg.json rename to derivatives/labels_softseg/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_label-SC_softseg.json diff --git 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index 0000000000..34bd2fce5f --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40644--2d71daa61fa3d91bf67e6d0e35aa984a0661a467342e08ecf12f3d60e64475fb.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index 45221a77d2..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40388--ac62a678ddb4bc516bf7bad606b53ea91b8043306772530be71450a63c4b6e53.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..b3ae542a30 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40332--39070bf45fa2d596d528fd5e127cf1e65a6d54023fc2b78962a78b8431c938e9.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..89f0f0d48e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..5eea634216 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s429994--147f723fc8870d4ec7f28181035072c2235de4adb26444035ccf720f1474a648.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10833--fd1bbf48a513f257040ab667cdca90f0e0ce927bb8064843e4f1b6bf83deb205.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 73c3d0ebcf..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10878--51aa59314b05028f46a8c134bf4d183bef84461cb360ecb46b70950e1c802d16.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.nii.gz deleted file mode 100644 index ad5ac9f6ce..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s427151--4bb8e01d3fc09a0f38fd5a6e2eb3e9d5972a8ae510a7198e57c50f852ee582df.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.nii.gz deleted file mode 100644 index c4655abf57..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s57221--5c33a6980056adfb333209c0c710177a8e39f6a35b89e413597d7ef871a5b17b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.nii.gz deleted file mode 100644 index 04db2d2ab8..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s206813--767384f56e823bf71601801c3dec2ed1a4f90dac58588fde6c189571d8535a07.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 4c566bb32f..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39899--e331eaa17f8da415d1ea6104aa4d3c72a93a45473fb9526134cb70498cdf276b.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..d4c56bcd60 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39858--d405be195b7301b7a75a884c7857902e15b7e37bd7f9692af042ffa843d892e0.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f0f6d44397..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39401--137d985a36d10ab8aceaeb112348b54dcb0cc6448548189e66001f84831c3390.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..35f8d21b8c --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39314--b34511ad78234d13a2523d6d049b0b9608f263da4e0d71a9042c1bca72232283.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..89f0f0d48e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..2b45a6d8d6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s427122--61e6879d18a5605e75bf7e4b61857298c01f9b39f25e7cc897b8999cd5e90533.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_label-SC_softseg.json 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b/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s10374--86fdfa2a4e145520c6ad38290ed7fda8885e4fa9acdf91712b6494782e13fbc3.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 1414df55b9..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s10419--aa2292279b0559175dc9e56f0420b4dd2955d66c4c49c45bb129fe055aa8a44c.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.nii.gz deleted file mode 100644 index 4416459809..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s419043--68220ae10b67194bcb6d819a522d75f1a45a9f0abd4da347308ebc2451223d7c.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.nii.gz deleted file mode 100644 index 1403d4e3cc..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s54109--8b1642ae8810bcc8e686c562b6680dfe889756bfff4142299e6eb87a60947e87.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.nii.gz deleted file mode 100644 index 70cd0916b0..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s181072--19a59103a507cc75318a68b80b476822d69cca9fec59ac2f3aba9805b33f3392.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 0fba8397cb..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 6f3ecb5a70..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37869--5fcda0191511e97a8749a49b216be60a224ae08932d588bd8ae0a3efec95d834.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz 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a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index f542744abe..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s37943--77f3c6ac9ad75d7a14a0a53ded067f6b84fcfb36f722ec256bc2448a72363172.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine 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b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..94ada740f6 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s419010--1ab07dd2baf7f7315349dd7d8970ce5f86d53ba615c7a41c65efd53c4c28b302.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_label-SC_softseg.json 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739584980e..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia04/dwi/sub-vuiisIngenia04_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s9738--6e6aa592c180a4c0da34061fdff7284fc7095ce820f595d2df202e6e559f2284.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_softseg.nii.gz deleted file mode 100644 index 2fd16d2952..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s423537--2b5b8aef6263826a66736dd6b109172f1ba829442bd8cc2d1522ea7af3ccc0af.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_softseg.nii.gz deleted file mode 100644 index cc2b7147ec..0000000000 --- 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a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:04" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index c3c3910a24..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s40797--887eca712275a5f260b5f25712325a28f9bfffe05aa85d70f52e1816edccbcde.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_label-SC_softseg.json 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100644 index 0000000000..a9ade4fa80 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s40722--6cf53117506dd64720efe616db46536a35198b3d052d28cca23056603b01c33e.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7646dd501d --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..f11fb68b45 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s423505--d0e74b9d7a5226c6833bc7e5de9dba473dfbca95210837643e8b0d89b22669e8.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f106b68fac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1ea665ca3c --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s59958--e001f89d99ebe3c21c77bd78fda32ce6cbe3b664b9aed7d281bd3f45d3511db5.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..eaf03bec4c --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..dca1e3b4f8 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186452--3b1beb0331b62ce6bc0bf9798d58968b77646268ca96f7cb7e0b6b67fd52f7e0.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T1w_softseg.json rename to derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..6dfa9171fe --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11065--ce470423443019b5df7d1762bea2b6a55b0c9b1b198c36aa68d44a0dd4ddc5ae.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 6086bb20b2..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11110--ce038b950a538a9597a62f3a546a2da00a82171494be3d8f4625fe8765302559.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.nii.gz deleted file mode 100644 index 8f6c2a4d42..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T1w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s425858--195424ad7362a85d0321f7f2c19e16833f2b023931f475a8c1035b00a5c933dc.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.nii.gz deleted file mode 100644 index e4f4a55371..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2star_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s58655--073845224d6ce707ae572958c07bcd04c1c4c5b48899d0a112cc34a92d6e7531.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.nii.gz deleted file mode 100644 index 7824732310..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_T2w_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s186607--614434db6bc19ce2fb6397314bb7f90eda43766a14ba46454a6eec1df059277c.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.nii.gz deleted file mode 100644 index 33285a412e..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39945--afe6b68473837992160d278869f4d9ac4f931b04adcb3740e7a8dad4e76af73e.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3ed004d900 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..21d408368c --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39902--dee00634c120cf7cb96d18de16bfe22a2d097dc34d2d1c428ea4455b184f31ea.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.nii.gz deleted file mode 100644 index c7add38082..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_MTS_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s39493--c35b2a775838180f346c94c5c8ceb082961f0c579976d0b59079e786ebd72713.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json new file mode 100644 index 0000000000..3ed004d900 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..78423d769e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39468--7b413e1560a332870c1504eec82a06cacf47528097269e5c7c132f36ed9f1c48.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.json new file mode 100644 index 0000000000..7646dd501d --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..1e99bd561e --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s425824--da73165774c2eb39a6b9bc1039df51d1eecd8e68a00944bd293086aa96198455.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.json new file mode 100644 index 0000000000..f106b68fac --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..a53ac0962b --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s58618--473fb0bb0acd3b88c5062ba6f6af2070d0ae6b93e4d5a650b6684b77eed18f72.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.json new file mode 100644 index 0000000000..eaf03bec4c --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..4cbc66f682 --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s186575--63e8c3c6075eb80810a255de0d805d1635ab2c46d5f13ac1d58df023a8bc08f1.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_softseg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2star_softseg.json rename to derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_softseg.json diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_softseg.nii.gz new file mode 100644 index 0000000000..428269dcce --- /dev/null +++ b/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_label-SC_softseg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s11101--c8c9d8cf6a38f75fc763e4ca8801b92276c6cff7798f226bf2b72269381cf3ce.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.json b/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.json deleted file mode 100644 index 8c4ed7b180..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.json +++ /dev/null @@ -1,4 +0,0 @@ -{ - "Author": "Sandrine Bedard", - "Date": "2022-10-22 14:37:05" -} \ No newline at end of file diff --git a/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.nii.gz b/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.nii.gz deleted file mode 100644 index 47a9adf568..0000000000 --- a/derivatives/labels_softseg/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_softseg.nii.gz +++ /dev/null @@ -1 +0,0 @@ -/annex/objects/SHA256E-s11146--814a8c85c8756b86074f47be891b711ffac4aef0019b855990c04effb5cdd2f6.nii.gz diff --git a/derivatives/labels_softseg_bin/README.md b/derivatives/labels_softseg_bin/README.md new file mode 100644 index 0000000000..dc82ec3a2a --- /dev/null +++ b/derivatives/labels_softseg_bin/README.md @@ -0,0 +1,5 @@ +The derivatives labels_softseg_bin include binarized soft segmentations (desc-softseg_label-SC_seg) of the spinal cord. Softsegs bin were generated artificially by averaging binary segmentations of multiple contrasts using [process_data.sh](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/blob/v2.2/processing_spine_generic/process_data.sh) followed by binarization. + + +All problematic registrations or if a contrast was missing were excluded and the pipeline was run again so the softsegs only include good registrations. +Excluded subjects are listed here: [exclude.yml](https://github.com/sct-pipeline/contrast-agnostic-softseg-spinalcord/blob/v2.2/exclude.yml) diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90194250ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7280--270d9b8a125dbcc285007136baacf44270147b10c3f400b6bbabef05cc1fcf43.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ea2ea262fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7246--8316eb139fce88194ed7b7bb0a9594b70c56d0535c36f0eb95567acca2fe71c6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8162eb3dae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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0000000000..8c5fc38460 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14822--309661dba594a23331957f2826d7f6fb42d5fff9e4e5b70c74e5671745b4bba9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8377974b6f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bbdf30c056 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu01/anat/sub-amu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37628--bf17518a224a33e0484f3773cec479e3f3cc2aaed60f0299096b0300f6ecb70b.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-amu01/dwi/sub-amu01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-amu01/dwi/sub-amu01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-amu01/dwi/sub-amu01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz 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diff --git a/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..01b7691824 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7271--1f60b101426388dda8e3276a434c563ea2924cea55b626f7033addd0cb82a183.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 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/dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f2fb5f1334 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74978--f5abc32694061b831ac39f7baebcd9e09947b0473b217747c7f92a9a85892a94.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0404721748 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-amu02/anat/sub-amu02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37601--b8d6cb8922f1e597f7f2176267509e309bf604674474caaee9ac64bb629a674b.nii.gz diff --git a/derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-amu02/dwi/sub-amu02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/anat/sub-amu01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-amu02/dwi/sub-amu02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-amu02/dwi/sub-amu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu02/dwi/sub-amu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e03578af8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu02/dwi/sub-amu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1370--058d2773ea229d16f5ca8d4aa9429b8a24099321dc61d113e9642f95eb74708a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0137ed08ae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7231--8f29d6da550e78eda6c155ecc4cae9f6e397ab41b27bc24235a4a893167509fc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..79d1206c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7186--34eb68d95720c6b45d312f4cc11be0056f43fce0a6b302cb4eaea35969e4150b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b43441d8a4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74859--3bb411711a6287bcf4e88696f6fad98c699012fa68ec561c53c2768cb39aae85.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..adbda16942 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14643--917514cded99ab070ae1a3779d732e762e61addab132ad47b05914b02d0fc910.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu03/anat/sub-amu03_space-other_T2w_desc-softseg_label-SC_seg.json 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--git a/derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-amu03/dwi/sub-amu03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu01/dwi/sub-amu01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-amu03/dwi/sub-amu03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-amu03/dwi/sub-amu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu03/dwi/sub-amu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2d2fee272c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu03/dwi/sub-amu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1354--85096de9e9ecc0bfbdb20a415442a19d176691e69224f3a3da9c2ed3cc0bbad8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6423b5ca63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7147--d21ec02110d43160d5381afa74b861d3cdf2f0cb1205f7c4c71082a6d00005c6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05e09500c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5851236cbc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7077--f7c3eca76dbcb01b455d08d1aeba6696de2b2bbe8b6ab4a80b8cb9cb58e2f85a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3b901fc65 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..26c0646833 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75276--45bf2d83d819777d7521ae6abad8c773fa4a580991205a113ca655b2db4545c7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..517f317a87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:35:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fe25214eb5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14528--9c83742247a59cbf29cba4eec9f6df1886f4491db7c6aa56e259dd2d28fe9fc7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7521bf3377 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/anat/sub-amu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37010--f3b91746a5ee19222c5112cb8127b76a3e2098ac94c061c44e0c0fce32f60d5a.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-amu04/dwi/sub-amu04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/anat/sub-amu05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-amu04/dwi/sub-amu04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-amu04/dwi/sub-amu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu04/dwi/sub-amu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..31f4813375 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu04/dwi/sub-amu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1271--81917a6c4f3fe515161578fbbff7119f85d24d40cae29ff19089e79a9016519c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a92b73c718 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7289--f22e11d60c64c69a6da1c53d64fe91f7f8a514adf1bf33aa106a5fa1b31db57c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..17ea601679 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7180--67611e95d39a50c052b8c7f95d87298c2f70227ac171513d4815f58da87700f3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c814ed72f2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75396--b58e5dc816b039ff14827f076be61428baf12d56481ef26909e9d83b36f2c93e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..76d18727ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14798--b0a6bc9f0c3f97629de98c319b16d09e4c11fe57a523a0ad7311986ff2ecf94f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..555ba4b16d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/anat/sub-amu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37045--912ad8ab8759dc713e487c71aaae35ad4e6bdcb0a2dbb12ebb552025ed36c23c.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-amu05/dwi/sub-amu05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-amu05/dwi/sub-amu05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-amu05/dwi/sub-amu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-amu05/dwi/sub-amu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..921f650ace --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-amu05/dwi/sub-amu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1327--0fc0df1f625c8a51469c49938046f5275ce27dc7250cd50a306b03ac17c4acbc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ce7660166 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7245--4109c48f0766d1d1752a29a46b9d2be2d1a467beefb79799a6ce326515e3dd7b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3558a3da74 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7211--3966bdedf3acdd15a7aa17b3db44e1305f1f886446e1503c9ce2a470224d08cd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72f1e84ffb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75132--5c565955d9e766bd658d28e497cb1190193826ac55b897d654b70f0d40f94bba.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9afa0e20a5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14633--710fa124a9191235634baac67b9a3a1dc257e1fac3cb4852480852c31e65a2ab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eff6934132 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/anat/sub-balgrist01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36378--fe0c9a3b5fc916023190c62d603b859a10bd4c9a8950ebd394dc8107b33e950f.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/anat/sub-amu05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef729415f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist01/dwi/sub-balgrist01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s936--8f5db13fa9f67c7eb1ee69e31e7afc63be5287e00766eadbe2fca3f400cb647d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4a688bafc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7335--bd235115ced8e884873c13109ffea1f9db46ad0ff8a4564dd9c763dd8e7286e7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ff1112982 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7094--21a25837e5d46da3e36cff353eee8650a8c677d96214b9ce0683a132d57a29ee.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c193128281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75103--0044e0727ea53b7a5705fec9c3fad20210eb3fad353b3c8b98e7cbbf227d5853.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a7ed5ce42 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14727--040930d9db84c071059d75e53b188844271b64d196cd3702bb2bd475e52002f2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..873b44b59d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e57d424e52 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/anat/sub-balgrist02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37019--d00ef15cebcd93f86083e924b94f94d6fc0bb722d6785c2bdd30a5b7ea941060.nii.gz diff --git a/derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-amu05/dwi/sub-amu05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce0f7b42ce --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist02/dwi/sub-balgrist02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s984--ca5f2073d23f5fb28052f995018d1b957ecc647253197e5781db5916cc99a8b4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7094afff0e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7114--6d5f221b1945eef490dd53ec9719dd8c1f41352851f5b34e0fbe7b0a204c6e6d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0aa8f7ebad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..96d8446654 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7066--76c2b835dbd4a15056512f55fb7a3d8cf09429fed3d6acab4d840835c7038368.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..82ca064032 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fb2afeaff0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74699--ff93ebe19377270556240171b8a30de0d9e735b6c3ffc6ff218dc72dfe648a39.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..70cd26abf6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e56f72822 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14522--760e9cfe1f4872519de5078aa0e2787ff7a23148d4b7af4f2e3a682805387148.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6a12815a35 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/anat/sub-balgrist03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36895--8f410a95a1d080281dc241e8ea39312532467bcb6b7a1623dbff9f0cc510337a.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0207cf6f74 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist03/dwi/sub-balgrist03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s881--ffaec1eefbad0be23b7478123a72fe30e6c0d55d586c99a050aed8150dc27184.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5d8a8697a5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7262--ea8e5f2421078359bfb2cb54b1543b14069b3d32d0edfa4483b7b539ebee1e30.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ef789f6ba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7181--48fee3a1ebee5db804aa567bcaf3ef9ff871573d156c049fdefcb1bd5aa63f10.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8c2c56f718 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74743--4f4b9b10880e12176ca000df34afee52e9f49a7430a3745f63821da35519d4ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f7a04906b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14687--093f047461aca0fe67816e494250e72336e3f7f5e2b1acc9321a94feb9d95975.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b654617aa5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/anat/sub-balgrist04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37961--83e74cef716f6766f99d52b4bbd9c25f61c60963aec3827536a0dcdeb8add3e8.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4199c4d6ae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s964--936bad2eb75c7dd4a50b1774395b7602cc048e8a7ddf0a6d73b1d29352c11ae2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45d38bded1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7196--ecac4f8f91a6260f41d438b083649d7dd5567da18c9811ada776c49b63afb88b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..029b09105a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7147--b25cfa493231e43b61b2d618a66069925f6634f3551f4eada1371dc72f19475f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..98106fd88c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75096--51996e1011839fa814d13406a6f34fc08d8a5974a635f5fb8fdf66e1ff33e543.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c01bf97385 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14720--f4e91d7c278d364168e68091709db6d8ca397c072f028b7b34031291893a91d9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4153c0f0f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..27b38d4084 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/anat/sub-balgrist05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37241--3899a14eb4941c234874fee2c06792f5a6cc3882f961e1fb92811b389c0cf08f.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/anat/sub-balgrist04_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..163df5caf2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist05/dwi/sub-balgrist05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s914--24cd6aac12aeb8b73d72279843e07c539357652367ae15984cfbdcc9fe4ceace.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1dbd3609eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7238--f858d255f96156d746c4a39ca7281bca36f67378613deaba6c137813a392e660.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e3147c3d95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..55a5a4cbca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7100--a6f592eba3748ae7eee86cd33570f30a4b5519f1aa20464b75f3af89bed63a9a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b726e941ea --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95e4cf2f63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74868--d4c004fceb733a4306c11553606c5e308992be1c9e254b89bc406e120e5ad17b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06335586a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d15dac6fd3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14657--3463fe58f18843824a62f8be2363afb7f4992e56e27c3360b2cded1cf85de550.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-balgrist06/anat/sub-balgrist06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37009--d9c38e828468ecd614a497cc86d70d8b6407f0d97d229da3b89522c7069a2c1e.nii.gz diff --git a/derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-balgrist04/dwi/sub-balgrist04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-balgrist06/dwi/sub-balgrist06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e502e6255 --- 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a/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..59387c497a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7120--144851215ec0b3c90aeccdbd29af5c7735882127da74d30c72f115623308bf93.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1c1117fce6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7128--20ab0e7483676e45a7f7ee3b25c4c00a977a3eca5ea769953175bad10d83c6dc.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75537--3577edc98d727b6dfb315d75cbbc885b24516bf1fb31351d2231c3f44423751f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..aec905b363 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git 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+ "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f6bcc2e64a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/anat/sub-barcelona01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37292--f569fa2131d38c97b32fc8c28eb95b7648f26b0207faad92878f76a9de3e3775.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81ff9a0bcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s956--194814e067935d914023280fca95e8d4be1d9f63c0cfb8bf4e68bee010409e98.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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"Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..951cc4c3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76311--b0f0d828bc7a73b5534ffddbf5a247b38362dfe40ae72e9236218a96b07e2dfb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..aec905b363 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..70177bd85c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14814--c42d52163033171c500fb088bb2d8bc9509ccc9e846d86ffe34997df0082ee47.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5f83524c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad19c3d55d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/anat/sub-barcelona02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38654--be384cfb6a7099bf06b15aae8ad3a4a388c071812cb530d070e1b771ab404f72.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona01/anat/sub-barcelona01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e5ff6c9bb9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona02/dwi/sub-barcelona02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s930--d7ef1d465f052957b310e85de248d96887d0deac78de257b29badbe9350c171d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a424770241 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7298--b152432064bf7bbe651ecf2e9b6cccbe1556fdcf9a909efd64b0217d043a16cd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e4ae882918 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7170--de913cf589165d13158634601d1bb9fed19446d677b21966f3c4a6f78f385d61.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81390240d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc5901c53e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75522--6dd83996d18ad6727afd54ff9ac064d23af30f99da13ce7a16ae9338bf748b79.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..aec905b363 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..13db3c3014 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14735--1590ee7adfa0d5123f3c0fd9fb2a6c81e2d7d30c376e4465cf4b356af98379e6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5f83524c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..39f82f53b9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/anat/sub-barcelona03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38432--23d3fde2269af108ca28de5771b7d013454ab1ea2a8095fedcb47a354236b39d.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona01/dwi/sub-barcelona01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c71f1c0912 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona03/dwi/sub-barcelona03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s994--6bf409de0bc0b2aeeea2bec4e67a28f3528939262b28a88c97c3bd338468cc45.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7cc61fadb7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7316--fb92c5f2193add6ba7ac9d74b59553b6f56e27bdbf25a423b0c1a06c4edb6659.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..204635e79f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c402d5487d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7155--d1bd5bb63c85cc8c3f8cc075305c9c62811f56b418c4f9edab264df3fd10d853.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81390240d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e3fb77faa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76514--d4e3dbd1bd73d01e5f13a5f9a1359eca191185a6946933c88967db792e562a47.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2a1441fab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7329acb99b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14724--061e8d5b3aeb5cae599dce14f0e886d490478ed448dcb762c005cc15d61180ef.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..06597b0a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/anat/sub-barcelona04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38346--908594448013757f1b6d7b8a804161c7cd133d74af0512611ab0241bab2ea47c.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d51a07d89 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona04/dwi/sub-barcelona04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s929--a8dee90b460c2cd48ad6ff2457814a497587ba19fc21f724dd6c493d831848fc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e738403c52 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7115--ecb2f00ed205030112e47e073d0a17ae20bf067a142bb493e0ff3c2362d64451.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b8a87a6bb9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7022--c9ef6a0b6b1b23bb5a63c7ea90d5e3cdc291d3160f2989e0748f091c5d80552f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2b67812c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a93cf8ab93 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76197--8462c4c824281a9c80172b0c0e460b1bb7a1bb8de2bd5bf7d14270f40e0ba28a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2a1441fab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f5a41a6e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14497--df384083190532c3b08005624048fe55dab67151e7a71d6e799b71245b2bbee3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..600d7ea1bc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/anat/sub-barcelona05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38060--8b5be67ce77736709d8825fe8c04d50b30db126a8d9346d5b8e6864b2e4b27c7.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30fd5c9d6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona05/dwi/sub-barcelona05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s873--1fb1ba052a270ae2706399fdf43d7928607277cd36a4697b459351ef684b9990.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d17ff57480 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7176--593b06b92ed51d9bed6219a54948779f82f35dd9a426da6f92f3bdf2650f35fd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..458073cf27 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2c12939279 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7090--01fe76367e0571258b2f60de3cdac13d739fd7605f363e7caae8a75112be8a68.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2b67812c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b057c3d99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76693--930c0b71f36fc8c00616a358a623debefcc7ac6c7285eb82f262c67c754f525b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2a1441fab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ba3489fba4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14587--fd8293f4cfdec194e5229e9831c1f4a48a559cbdf955e2f6834a74e1208e0451.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05d4b3f325 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..40b547a9e4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/anat/sub-barcelona06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38648--81a134b9d1995e0fdd35f5479a5977368b99a8e5f0b7aa960b5f969221cbf807.nii.gz diff --git a/derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-barcelona05/anat/sub-barcelona05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..60af71dc65 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-barcelona06/dwi/sub-barcelona06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s914--abb0137579ae52f88acf08d25ac3ee0139d34d245aa7796c1ad52d2c7a40cf8a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6bbfa9b350 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7243--309af7016aad8ee74a81dec68c321299b9ef13225869c7abf24462018efd9512.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..919d73f8ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7237--c59e5f284c99ddd3b052d96e35f988f0a5081c69233b95e88c617d5e306af15f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7370fccd52 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4befc82e4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75901--b6faf138fee8937e34fb33daa272d03ace152a8e5ffbf352cdc4d23c69e55610.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..078a8d963d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1c30f0c0ff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14463--af107e5f77a27b8f99c4fc6849e2df544b87adea5fbfe779556b54d3ebc78f44.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c897218fac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e62739c455 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/anat/sub-beijingPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37398--6f7b24319d72f39655608a8eb60b625c72777d3c8159807c8296de9615131680.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingGE03/anat/sub-beijingGE03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bd3187fefd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma01/dwi/sub-beijingPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s894--21be00d05d37b974dd7611a7352493fd65ee0977065337502e9be5218ab731d5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ea5c396d03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7144--c0015536e56692f28c66d4523a190037b69dbdff2a581aa2007bad3b82028e73.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5551129e1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2725fe3f07 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7092--aa57a15e4524f91449c8c982ce556ee8727fb3e172f58235acdc8ae17189f5ff.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7370fccd52 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9124042d0c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74936--a2d3055864bf0498f9731d327577809c354d351718de1ab3a6723d4c7fd254f4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..078a8d963d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e94a2964c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14533--9ae65b6394db605b9a850b448faeda9af6516e5a76d1495d235c6ec0cf94bfd5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c897218fac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..26cd940f3b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/anat/sub-beijingPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35901--a055ba455d94cf61d33d7e1cf31fd6ee890cfc88c01b8c4e7597fc74ae4aba5b.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4b091c956b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma02/dwi/sub-beijingPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s875--ef00357ed9e85062c086f2a5bcf621ac1d7b1fe198e5701c0ad427895f18033f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a699c5d769 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7115--a838605106db6e5445dd106110feebb8eb74615ebaaefaae1f49b6ce93d45551.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ec809e3b5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7124--bcaa650d92e8d48b1c13793c70e4379b80cbf98e2e481d83a2fde7e6ec3a428f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2660b7361a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75214--a51e3884e0da84a42ac44a06dcf73a73fb2889523da7a99db1ce726c43a5d6df.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..586b84362c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14592--7c211c716a1ae7f4ea38169c78cb865a4655da40489fcaa3f3f0d1e3ec44812c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dd695ea199 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/anat/sub-beijingPrisma03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36904--9f3c4402f6bc03cf1e5ad831d3c9593e71aac6ee89a744263339b70425f5cd87.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/anat/sub-beijingPrisma03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d03bb67276 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s758--7a373279234408a6d30ff6e1e1777d50252de4be058fa7ec78506f964b9d3b3c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e1e838df4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7224--d4ab08850265f6b203fee23705345decdeb51506604178ea56c345d363cd8c13.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd1e039f15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7165--9ed3f484e3c53901378a2210ddc0d4f1049de91505622f9aacb0cb37155a68ff.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0803d3575 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s51840--e4901dda936980182895eb396396829803782bfdc9d785b0d3395ef430840b2f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..052a533dc4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14632--d85da026365008f01eb514a0a0d11baa6f140363001f07a56a37812604907a40.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c3ac571b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/anat/sub-beijingPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37280--e189b8f742034d25e3deb0f4541bd4fea40cc6cb11975b649e5095311ca47a03.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma03/dwi/sub-beijingPrisma03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5f86bb493 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma04/dwi/sub-beijingPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s908--17c7f1e3cdb822cc26422d5633c4ea8ad2958dcc033a0b026040216e41e9c568.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a3e76ee859 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7261--1df8e5993513ea78d28d578557c3b970f676a70fab6e14e592fdba3a473545f0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8998ed4c1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..98f1fcb571 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7166--6c68d9036e197a1fffc633525739688b95f8993012200f5c9bcb99e4cfa8a3be.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf848061bb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..123c71081c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76730--8fa5a2e99c2ca66e265fe3f2eb287ceb0ad05c7bf0ecaa3af337bb6da39d997d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e981c01895 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e48e3e5068 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14659--a32b885b5a2d898845eb88c0085e1c1e0e07cbaf243dda16be66fba96cc5473d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..06e3c334bc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1bce8bcbd3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/anat/sub-beijingPrisma05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38077--5fc2f30c208f222bf35c62ae21cc462ec7d421d5ffc74057f1ef5932b5f5b127.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingPrisma04/anat/sub-beijingPrisma04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f9d5b0ecbd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-beijingPrisma05/dwi/sub-beijingPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s910--f20f70d05a0d06c4056832eace40938d7915300ec4b81a544ddc039ae3c7cd75.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..608fb70135 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7260--fb3b0371b0ebe61d03477735e4f94e991002ce89272db32aed0e8cb85a0ae182.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90e5acc246 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7183--70798d0a9ee59c102cd650cbe42a0ac390463ca2b7963ede8fbe4bd75c95fb39.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8037df508c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..821f81d295 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74953--af6b3482f632e3b7ef8724c3fd5c0f934fde0bdd4c6d4d7825cf96fc8a71a0c9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..974bc14cf0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..723f0a77a0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14737--8b36b0542a6be6fa9970b8175b3744cb6c75658acbb3ce38ce236d4e984185e8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ff69d4dbdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c6941c691 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/anat/sub-brnoCeitec01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37247--f3edb7a4f185aca1296a7598e5148f2cca3db08dd3a7aa093df794ea3cb26580.nii.gz diff --git a/derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-beijingVerio02/anat/sub-beijingVerio02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..31f987531c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec01/dwi/sub-brnoCeitec01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s954--391dde2cea56c7ccffef3c122dda94ddd52477c6a8f3900f4b1f55a7e67ab884.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..77392c0fae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7274--10a90458813a6dfb7355f620a80d587560630f1b80da750d82fe5be849a8685e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973b24b130 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5d42af92aa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7259--5694031b0c0e55c5a057652f535559033fd1934d71b40ee8f209d18c8ccbf033.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8037df508c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:06", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4532271b18 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74918--b6b2cacd1172e82aa4b9c5658a67d5aed270bedc036b80cb5ace6eae16b76952.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f4440f818 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14768--a5474d9b4c297c5754b3711642529dfb50ed3e5bd322b01ca7b63e721f9b1750.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..337bb977fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/anat/sub-brnoCeitec02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36610--f33272932ed5de2b2b76c0fd504a09e7e62f4225a76d493e8252da60de5a3c28.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e92e12b404 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec02/dwi/sub-brnoCeitec02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1000--e25a2a669a4114af805cf0e9eb7a5e25ef083626e247a285c4231b662f4cfa82.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e652f11c91 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..43829a1c5c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7186--25914a98fc7da8197d9a0b4d999c06152d47ab1056f6a6276fdadc6f35c2f268.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0ecd094409 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46787b7951 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74713--de7e7f2b32c35c33b224992215598f344c6ad48b944b90a3878d222c5a333097.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d54f5eb65e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec03/anat/sub-brnoCeitec03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14592--18bdaa57737c9d5e5efa1af8d46b42af261de71633c51170d626b22cb1ca2ee2.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4f3c10a6d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7280--74febd04363ad32d647c6c3860c9cd500e875cc111f9f91a53a2b6613497cda3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..babe752231 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4146b4d614 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14620--84d0e307d8b95a6dbd9ce036806ac07f7900f7339e26ae75eac7ca61ce561785.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45939d99ab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec04/anat/sub-brnoCeitec04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36814--c14d78262fbf2550e1eb86cdc201b1ca61e3d3089ab309db8d2275c48bc98de4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0140c1cb49 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec04/dwi/sub-brnoCeitec04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s923--af8975478e8fe52179a853c9017c9ea0431b06ea735a0ae69d9f08f286f6ae1c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ca7715d057 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7246--4c6f5f1e4d4c3d51adbd68d6d2fa5f33e516e23d6a438df5769503ec6cfad348.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0ecd094409 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..932274a091 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75156--9050c230e89cb1a92e1a6261076b5c2f15a957fcda05fdee8f19338c8a2369b7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41e7b8872b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07e9abc507 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14694--004a224072018b1dd8e5c1f045951b947afe6db15eeb1de580ac640b49fc7c2f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..5e1cc398f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:07", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e7e07ebc44 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/anat/sub-brnoCeitec05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37514--d42ff063083f1529c82fe8fc3e5b082fc91fca7f4c37cf515f2c0691353ce5e4.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec03/anat/sub-brnoCeitec03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1826af9179 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec05/dwi/sub-brnoCeitec05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s989--a83ba0578715da2b11949f27ed529d00dd3c4df107eaa3e98454417ba27a7b52.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e82b76cffa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7278--88ac5c7a889f11d8df49ef988290fc33aa42c14a446a640e1da429a73d71c26b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..20004413f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7189--027e92a522f717f2d9ce2385b0669f94a84d22929a8a310711a3fcd01fa36eef.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c03d83de9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cca98eca71 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75094--a3f7a626a9a28a025b17ed0b2d45d76af33129ef5197f638bd5098e40579f8b7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..14365307fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..92da066293 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14587--3dac55b2d6bcc5d4c77092d76f93c63e4879062c74ca31a3850c5b6bd09760d8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d1552c2ab7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a21361174c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/anat/sub-brnoCeitec06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36300--7f846f320320114fa069ff8a0e0e86f51cf052d5d8072c0cde559c56e9947a97.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce6bb3a24d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoCeitec06/dwi/sub-brnoCeitec06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s937--64abcc193c5c66da036201b4ba8b4110bdf1628d54e8d3244f70a406b07094fd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e255aace3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9682--a8844e0a364b6de59827724dd5a8226c382f0fa8abd59140464122dc3d87adad.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2d35692cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cedb451624 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9565--017b9abed8abc147c10258a63c8ae89925a5b4eed7a7f6ee5e0df9b963dc2ad0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c03d83de9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b37956ec63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89647--a3c64e15542d9296baabd12dfb8d1d989905179cbd8ef9df6a58f103d0481682.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..14365307fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..489344d11e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18990--d71598a32e99474650b6c5ed512401593dca0503e1eb1dade6fa330cb98e7ea0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d1552c2ab7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:08", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3a05c058a5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/anat/sub-brnoUhb01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33721--51b4039ad128022d62418c27f1a1ec80b1d685b69774102a00cd6538d2176596.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoCeitec06/anat/sub-brnoCeitec06_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0778f6c754 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb01/dwi/sub-brnoUhb01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s6397--2be52cadfc98ddf561baa031f260acc88f805d07e63f0743b2dc026fbc36bad4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b1c78a11e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9571--8c92abfc6fa07e54e3de47f974b6fd2aded2d7a434daaacb038cb7cc57c4ff5a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9eadca23e6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9389--0b55ed171e90d0346f4378239367afa679eb0302ee98e522a6740ec8dfa8c511.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 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0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..26abeeed94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18937--faf6a5474c25f7dd85935952c8e1df129aa5e2298da8470cac7f3503bc42bc66.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5fa1c2668c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/anat/sub-brnoUhb04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33078--76dab8c52900bd54949d51c0731e05c9f2c2a6e7e5be844f792edcf9fa21156b.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ccd44267e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s6249--fab096cd349eda9ef9f5bb777288869f22aa88e48688dbcfdc565e2b300e239d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..24a4b3652a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9668--22b2f9381348a094b2f408890083babd60bb111b25cf95add8d72294b0a6d84f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a8f07fa838 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9442--9d99c3f7fda61273674cf627584e38a4ece8611befad08f61fcad5e9852983e6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..222ef0684f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89284--506b153253d836d5c665445a8f9d52d4cb891866aaf7277f6ee9c90b2de47bc2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d64e198d76 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s19148--77da52b9e34054e77854a3e2fb6ef61d9951ba10a3dc6bdbb5aaf67ab92d356f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..61f5ca9ada --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/anat/sub-brnoUhb05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33981--c8fb025ac5f9fec6621cebbd31a12fda0fbf387843caf6ef03dd566ec0799fb9.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/anat/sub-brnoUhb04_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7edb44dd15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb05/dwi/sub-brnoUhb05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s6420--8710dca317dca5ed2fd294ec82f6decaf9d818f734b37e73c12f330dd6c5aa73.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..896b37199b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9627--2e04b32a683f217e62bbb7c4833b7647676a15e27782cbcfe5eb12a35b35e6b5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6010e223f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd38bc5ab9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9418--42e3040240d3cd41131353360a7eb921f2e4a9ea465c3742abca8ec84fa74a21.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..738b9da33d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6fdc8fea57 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89276--fd27eccc4fa5fa485db18084c2365a2ce8761506d104a1e8f0acaab864b811ca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bd1a366351 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9fc01a47b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s18896--89e5ece7730be21e9e803e9bb9ec0106bc6bf6de19ccced9837d0b074734d45a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3683b013c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:09", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f2b6d3480 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/anat/sub-brnoUhb06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33099--39d75ab46aafc8d7d7ab8df03775d9678c7b25ca566f2969e7e7d48900d2cc15.nii.gz diff --git a/derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-brnoUhb04/dwi/sub-brnoUhb04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30c18c2f76 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-brnoUhb06/dwi/sub-brnoUhb06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s6414--5a85bcb7a95a4a3b1635c21d57f875863ec5eab84f435148181bba13c76f5d85.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0ed434fea --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7364--0a36597c008a3af376adbe18138796df9faafedd1f1741dd5ac64b6a3f0f751a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc7315e667 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7216--e77225f6c84eebe819e34c394ea600bb0f5dc560cd3b902dc17c82fb1699c73f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..edfcc4321f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..44ed1ebf8d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75055--263f3c4726b1c8fc4d702fcd89537f1ebe6b5ca279e5ae0d09fb6834407f8950.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b406aa8f4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cb4be7dcc6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14835--056cbabaa1c73c5a1c81280083c19207c51ce41dda5e5323b13793d41316b103.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b3cadb6670 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..626e97ae0c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/anat/sub-cardiff01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37464--61a17c0599d10c2662eb39317b59897797278eb6c91dc1d759a6e9c975748f9f.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b3baf0f923 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff01/dwi/sub-cardiff01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s987--ad245b7983ceaad377a17539da1f1b15bbfca0ffc9017d07ec7882ebc8848a08.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6298f7cf93 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7324--3cae966da757b57629c3315d26fc07ec796d28c0528443bb531c775f9efe3245.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3986103c81 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7244--45e45f3e964e98459cd2fe81bbbf80818cc05a12c11d2f3066afd19636e10440.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..edfcc4321f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edce753ef5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75502--750e11b50ab84e4208e8521a82f08ec9c8fa28be8110b86488755f7aa444a6c8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b406aa8f4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1f331f68b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14835--0f9b72216850304d0e53f6c3eac8e8946fcc9450cd2d95d9c0471ab8e970b2af.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b3cadb6670 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4d907904d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/anat/sub-cardiff02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37593--03dcb3639c5efca03c0a3262437c9f99b69382ab98c3433892f4f6a56c786b09.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff01/anat/sub-cardiff01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a872c6261e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff02/dwi/sub-cardiff02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s971--34a9dad3806e85922a6a8c4639862911d64b024842260f119cd2cceafbb75c45.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..360e874a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:10", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7611a3e1f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7268--2e8f051894bd7e19256a0bb89aa57c22bc50dcd7fa759878ebc09b37123fe008.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc3645cf1c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7197--1ca22f5bdc64efb7ef6ce2b961b71fe248294c1a4912a1f58b5923ecef0a4f3a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94735cc61f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75328--c9ba2e640de3734c8f7fc4e56ff7fb99ddd0ac3abe849274b29ca5915a823ca9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..20657d1df7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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0000000000..ab3788b5cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/anat/sub-cardiff03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37286--060f7a4473f8ccd42f3399c4c2e9af68a4a4a0b1f0d062ce2549b60a0c13a71c.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f495785067 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff03/dwi/sub-cardiff03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s955--f18c20389df5fd3ddc9b1f3d7ee090748c9eb12c33e51649276dadc0adc0f1b9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..de1471ec14 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7288--ddea4108daac38b73565fc0a4429ee7df8ee5e6f1a00548295c001a9982b7a97.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ee0495be5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7191--bfceb28f24291b8721dff882d888b436bfdb02b98f4bc9dfda805603030a67a8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..798b55578a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef9dbb816a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14706--77ab12ced9da3ebd04b58fbeae6cddbcd60a71fb5c3aecb24c87cab6d64b991a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..938f0e8c2a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/anat/sub-cardiff04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37412--0bd934d971f9a171ab30aad1115b6c095b708258e31375c15c0f590043f74293.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2e4e537b94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff04/dwi/sub-cardiff04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s991--2cac4f56144677bc6fd1f498e49bdcd038529e8b67fa63bad55bfd1839a21c26.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3938d90f03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7280--c3b7e1c3cf2180916c6b2cd1cd2f80c5f53f2d92589a167d545731c8bd1b6b18.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..460a917be8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7193--9f85cb159e0ece3c9e238598c3e8f97de92133ba9e4679d42182c5c8bbe06b0c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8d5f0e0425 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75090--fb1e290a4dfad789e4b5efda41559cde1ff6c4c86437998e8c9feb48c239da8e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f38654ddc7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14729--bb85a535fabbfaba93a1ac0486c178839a6765935d48045caa3c4d37acf927bb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1515e2366a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/anat/sub-cardiff05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36568--e829f3a3de622f8a4add464d25fd336cef7f112688eb93719b0202d902d2efee.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..147749007a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff05/dwi/sub-cardiff05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s960--ab819580d3eb72d06291bc1ec4603f2dcf3cc720d5d1331ca498973c945987a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9dad3f7c42 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7302--713a06cfd69655b8550ea9063eb8a049054a7a8a83975dd9069184aefe188398.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2d5fd35f02 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7161--dc376114a47b174a150086b7b360c6c5ed23d8b04285ec4b743e461229b8173b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6de2cec56a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75145--3aa57c83b67224f28c291c8a1a81dd904c6ce0fa971f075f77e16e8aec275e99.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8512a4d479 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0af124ddb1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14678--ea9ed3087ffd5dace09d8e86403f0451675785779d083ef2e88dac7997a5c704.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..861a1d1770 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1bd75d8e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/anat/sub-cardiff06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37645--3f9d83b829bc7146e8f1d49c87a6ca71bb5e19efc251c44fa44d55ce4643988d.nii.gz diff --git a/derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-cardiff04/anat/sub-cardiff04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..859730bb18 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cardiff06/dwi/sub-cardiff06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s937--8700c4858e91716df3a4957bbb604e13c0b83ed065d22ef016325c1cfc40433d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..351e7cf6e4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7265--bfb988305af550ccea1abedb9e50a6f9eb9c26e5941dbc02aa1097a7477c4f51.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2bb7485300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81f76804cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7219--21345d8e58c00c3db0692d30e4e82d09161bd4d191adf6f30b391c1d906fd846.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9a4c72837c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:11", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ea65907910 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75030--4b5be490526c783620f4b9dfe18b678c9ac509afbc92762ff707af55e4637b53.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45ef429dce --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14750--e9ce8baad93edab55587fc13473ff60a5a6e9195fd45225c42ad058dc2a199eb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8b4fd43f7d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra01/anat/sub-cmrra01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8de2445c49 --- 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b/derivatives/labels_softseg_bin/sub-cmrra01/dwi/sub-cmrra01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s954--314ba9855789b8950261321c8540c506c0c77024edd43626c8c5cae560722636.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6a5438c00c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7336--dd808d55d6ee3ae4cc4939eeeef25f78948a7044213de5a653923e078690ab81.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..85c9fd0cb0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7233--6414a92b0ca885e9cb00a2226d7b4fe8c96b50c9d84c3c02f8c42be7f15f4c43.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fd5f1cfe1b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4d0266dc52 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75201--be8ff7f2de55ea130604784ed9563e8ffb88aa473ffc0a7a58daef8c5657e8ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2d4ca8995 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra02/anat/sub-cmrra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-cmrra02/dwi/sub-cmrra02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s995--fc7135c00b5266acb2b7809ac5053c251f133ac57a4ae3127cc2806c79733815.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b0580c135 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7225--71a5b35822a4596a08d48b72576c47969896e1026d960915eda29a7ece1b0389.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fd5f1cfe1b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..77ccb2dfe2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s71909--aa1a125d7d7a8c522540ddf1562f44611a316fe49248bc6cd5a97bbd09eff3fa.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2star_desc-softseg_label-SC_seg.json 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+/annex/objects/SHA256E-s14667--d243ecdbc43c7f35971300f5bbbbc95cd667890457906bd93b8f488effea0ced.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8b4fd43f7d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra03/anat/sub-cmrra03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5910422dfa --- 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b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5fdcdb9a33 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7305--0d5ed808f70afe3d7625fff442d73e9f960e8fde65dc3ed02d98336d4b391ce5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..28b9f3f5ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..20db200282 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7225--254b5dbcaaafa5532eb182bc79a655161623c67788be248700e5455ed627f1ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fd5f1cfe1b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7415fd5d77 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75505--6e1c394dae2ad7e265790c8cf8365145a1f00a57d9b12a6cbbb51c3ae5f23cc1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fda18c488f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:12", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9bfa777acf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14784--0efb88b2e75018db2a11a6db51a90ae6da875aa5fe2a2405303e3bffc434b218.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..685726716c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra04/anat/sub-cmrra04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b44c213c00 --- 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b/derivatives/labels_softseg_bin/sub-cmrra04/dwi/sub-cmrra04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s977--edba4efe139d8b244145a52ee9bfcc6a86276f82d6e15cc99874b9038aeb6df3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b6393a0171 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7213--7103c30c5e2110d7c91ca74fc88b5f4f7f00175269d3c18ef0b39358001a90b3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fec9ff3178 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7078--5b9dbcf5ea98ca13861bb825158d519d18a52f491b99b62a41833b3a032a34fe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6de4af4e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7730136070 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74860--1a06ad4e6ac6530239058c08fbf98305c9eeba82bef6b230dd2fbc50e038c4da.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra05/anat/sub-cmrra05_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-cmrra05/dwi/sub-cmrra05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s897--7e0238b534d97793bc6ba0e27bd65bc7a653d4b53e67f75cd11dfdcd770d8f1b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0a8aa79ac0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7329--67eff49cf593b3208df094c0d146098579c0d335c3f03100c92647e9c904eac1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..713dec882e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7201--968110c246d099cffb5fef552585b5b31e567b58851aaa33f6653d14c5eed4bf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6de4af4e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5b861b867 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75585--f77c8e001d4b73e599b4a9a4ba067541d96552b80708bf96b1c79ebb4be47de9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrra06/anat/sub-cmrra06_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-cmrra06/dwi/sub-cmrra06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s949--5874c28fc84cd5db502277a298d5753c9fc726352a4e4babd8c1d14aed59de55.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f76bafd71a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7190--7bec7d7135467ab4702c410efd3ef8d501d396cf1e318d0b5e6eb0efa2361454.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6de4af4e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee0dd1c23d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74677--60f2838095bdb79db1057c1bd2565df02799c7e487077015d0d6f4466c9fca04.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb01/anat/sub-cmrrb01_space-other_T2star_desc-softseg_label-SC_seg.json 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cf3b73a183 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7153--e182c509f5efd1d6d2ab12831d3adc60bab6418d51892d7cbbda80a9f9ef831f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6de4af4e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3455049ef2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75350--7cf836d430a4acd7405a37bcbe7a47db45753cc2e7a7900bae811f43be5e044b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb02/anat/sub-cmrrb02_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-cmrrb02/dwi/sub-cmrrb02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s947--237f5bf94ffcd23368af7b93203940ea24ee161330e25d34094821a15f9ab81e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..528f322b85 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7272--cb0dab1ca297aefdf91388da2d8c4d0e9b0c482169bb17de06d549034c96a7ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d018bd5322 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:13", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d7d1977db0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7155--6abc32aed8d2b044edaf2b219f4259b578b51e8ba485ce24a5c21455350ab5cf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9bd917a88b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75290--f02d96fdfa3667f07c893b872e2c163dc2f61289bc83ffc53875988d371c21b6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4121e34f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14698--b13367fa63c53e9158000c03c80a4afdaccf11f49194ec49961ac05decfdbdf5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a527f4caa7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb03/anat/sub-cmrrb03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..44120577d4 --- 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b/derivatives/labels_softseg_bin/sub-cmrrb03/dwi/sub-cmrrb03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1022--8b59c107818447ea08fbcc3876a9d0e32f3568eae3b7bfdce7abafc431af65f0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ac5709be7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7252--43ebd6b75eae7d35d604faa7b4ecbc5b2c82d8514e130f448efd9669cce02ace.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b3ffe651fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7107--7af229d7e7ad8485e3f759efd3a6cbbe6ef412342718d4b3f49a6a36cf1ae118.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..334445c39c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75287--ee82551945138a6e77b7f077d59e2b8ca6d93825114559a7fd28412b3cbf1d9b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..15bf782b60 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb04/anat/sub-cmrrb04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0f4607c981 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7122--7b20b6daab75080665e41f64be85d6f69a0364c7f9d55f6930b34888346e0f9a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2261588457 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75512--f5255f824bce006dd88f88801a52bfa29e2b1ec2d3d8ae5ab4b00896f35fecb4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a2b8bf1f15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..130d55965c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb05/anat/sub-cmrrb05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-cmrrb05/dwi/sub-cmrrb05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s937--fc8f84fed73ce96841a14bd966744f17e061becd3ebe841d53126e2506949314.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f21629bf3f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7405--e0daf249c0e8ace1b000982128958c3494b895ffa2cb26680e507703c10b3c03.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0f9e74975b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7235--5741d9c76a87ee538412dfc1889dbf45437e438930c084c35d69bc62d016377b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b916fbbf0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a976b9bd56 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75755--e92d30582d6b6fd8f1a1192cac0188e7ec0321ccc78d3ab32716f2e6137714ad.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb06/anat/sub-cmrrb06_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-cmrrb06/dwi/sub-cmrrb06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s977--9568181cf12b6caa3461553b01361b0d055759f784486632c9ea7f927ac0cc3b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f56c694355 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:14", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0584ce214d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7224--d3dc176d9166b05de9205b2494eeaa8329d6238dc8f0ba9926c5ae886354b351.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d7548fa6d2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75437--233838a5d5fca3a2bdb435c41816a95ad7d96e37dd6f05ddce9dd907299da283.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2star_desc-softseg_label-SC_seg.json 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/dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/anat/sub-cmrrb07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37059--291858a54f18b7da9093bb37714509b63dddf783966108d143def81dfdfe883c.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a9ecd8ace0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-cmrrb07/dwi/sub-cmrrb07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s923--19912b995080d691c466909ad8b93f9f95b7cbcd188dfca65167352d24dda826.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3826bad6f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7278--0226308233375be0a60ccd3c3f9ee4cd6d08f46859a776fa070490e8f96b117a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f41e5f21a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7190--82435cb2c7f9590ec1beac9a593eba74c71c7bbb7534b9dd81abda5bb8dfd8af.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e654d54c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75538--9785263a2af26f54cbbe292cdc545f94cfaced88193edb84dcc62e37ccb2bae4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..007de6db70 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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0000000000..035b219966 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/anat/sub-dresden01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39002--3371b0a78dbc963e48a27a3a1c5f75c75028401a886bb461848200de9960c195.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2750e572c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden01/dwi/sub-dresden01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s940--bd359c0474a3c1ac2ab7db443e067e98eeb84d5b1de92ac2be8d79f2b9887b5e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..add9a31dc6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7281--c3ddaa78ad3e391fb7f281266caa7cc4577f5bb3ac26eeb897e0808d823c095e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7489b3a135 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7223--ff9c28a865a5992df098a7e4ad0dfc0d3f47822ee5809bd27d3e591ed7aafd4a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T1w_desc-softseg_label-SC_seg.json 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+/annex/objects/SHA256E-s75744--390172b9f1d41badf1953fc760fc559946042b8fb3b81765d5cb755f94ea1466.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..84239c3c0c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/anat/sub-dresden02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s39329--df57577d078a67793f9364c2b4b3930475cbc107dd63a69d6153620a8b1d0399.nii.gz diff --git a/derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-dresden01/anat/sub-dresden01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4681923846 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-dresden02/dwi/sub-dresden02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s970--afa413bfa12728218da8cf4d6b0aa2f5dfcdd9a31f333457bad475aa139bf1ee.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1220f10d5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7398--11df34876d10fe7e792d55d053d0f82c4976c075231d1317d99e1b46922afc12.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e5e1d5679 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7154--eb4ea09bcaf7428bd4b35472ff04c3bd726678bb2b866fc076ee4fc7e0b00bed.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..24c413d664 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4b814d89a6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90950--6e2c269aefb01581793ed596789a6162d1f38b91bd09ea8d457301a804d0a6dc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0e4b0dc815 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:15", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..12d3a7c0ac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8185--3319107dae5642c3f4a4bb662030045a8052bbd9d1242b098bf8b250f76d9f08.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva01/anat/sub-fslAchieva01_space-other_T2w_desc-softseg_label-SC_seg.json 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a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3ef649558a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7339--52ac86cf4a8b08331b1656245a716290c6e03689f8966e8840f14411fb9869e3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ab6ceb113 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4cb813d4f0 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ec17ec942 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8013--12ca280b3e67dbbacf45d7b1a2dc621cfade5f895c992293f7698a758206af97.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva02/anat/sub-fslAchieva02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 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derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..15e7d1ebb9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva02/dwi/sub-fslAchieva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s937--b4b7f6f14975ca45a340f4a5079318ca9f4ec9456339dd2921dd5f6f146d4e96.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f7a7fe36ac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7085--8f61d2a063f1ce1b0ab4ef6301717aa609d88d5cb46876f2a8a20d8a07bfa812.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f0740383ce --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90641--f6ec4da016b1543e28f15031279a255ee03bf4f00b8941ac6b1dad1d5885441f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4ae32867de --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8029--21adce5c6a6a6141475f955e1397710d4ed3bc25c94a5a82149c76cb769f22ca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dcfb187921 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva03/anat/sub-fslAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35329--2ce079f737f9e2ec9dfa093f8a6d743cf371547e6539a84d10c576f316f4d743.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva03/dwi/sub-fslAchieva03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..08e5f55dae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7393--e21482833d6f5d1341ed649512d0c0a0730da8afe1dc9faaa3f9f32e252fd505.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e6ba7dda0a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7079--f3ab91cf738d3fbb4f77f14c76fb84b33667c1159ca9e7bcb556babee660df44.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..15c8afde98 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..af7994900d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8104--2726b88e7b727faf640a31302fbf463e4d23a1aeffffab547bd33d20aac9431b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..56c5b980d4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/anat/sub-fslAchieva04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36380--77a84f73941000e20664509ca65d664bdd4d34c0b01aa6da9686e12e36691ed2.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..28269928b0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva04/dwi/sub-fslAchieva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s994--af4662f0ad4d62395ab3a91757dff612d5b69bbdf98dfa91b7a2ff6db0aa8a71.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e4db125287 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ae91b314f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7134--a879109640e58e433ce1542b71a45861d9d189be4c04b7f6c639e4138af7acbf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd01b517c4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89778--864cc3325f423e7fc8c432ca452ec640684dedaf1694a686b3a721880a21332c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8c55da5a5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fe81f0ad2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8079--b6cdc8d0f057d53cc9ab3b480584d97b04740885227068544735b164094c9f6b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d9d606bdfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c8ef8506f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/anat/sub-fslAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36200--2f29221f8b01bd69b967f1a9a7c4da6c405aa164731fd90bbf850f85fe45eb77.nii.gz diff --git a/derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslAchieva03/anat/sub-fslAchieva03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b8b6f440ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva05/dwi/sub-fslAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s962--a57976c5db23adb8d7978b31ad81d8717113372f2965af2394b688b55f1cdabe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50182b5288 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7449--e56ae84e79749998438604b410eedc87ea39903075f07b5422a78a8af7c28f52.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6157a25edf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b8564058f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7037--a6701a7f80e66235617ca4c6a42992cb9e94eeeca0020bb003eef3bc91be0947.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cc6819b606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:16", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..10dc4e852a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91922--b7b2036a5e4f96745909543b99a6004adb2bc353d4dc06f5ab46904fbde34019.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a3d6bf658 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8151--3e61863e57a68fa712d3ff7e762b0ddb7be0c06f0c306a64817230bb71feebe4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..414b8b5b27 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/anat/sub-fslAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36884--caeea5a424eb0e35887a08363f8b3c04326445dc3caf888b5a43376fcc0f1117.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd2d10ddfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslAchieva06/dwi/sub-fslAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1021--3036e9e20ef2bb307b65660aa371820bdf991bd4860d2732a3afc3e4fc6570ab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cc26b74e21 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc2f58b5eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7174--19d249e46e147f17d663c471f0003be53fa5174b7f3e6a1fb1e7af5c714a4d05.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..06c84a68d6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75538--386ee44b33e3cbf968edd5e600bc96e5b2eb3c34a5423bf1bed1a277fabfb280.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5cfb4165ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14821--1f87494bd875c3b9c08d8f024ce25fe331dccdbb452ec17bafb520b4b25e7d2e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..37f7f64b1b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/anat/sub-fslPrisma01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38318--1871273fe4e0b0c308074d4a0c81ad03862b747f6a5d614d14631cd2774d31f2.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3bcb4cc6f8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma01/dwi/sub-fslPrisma01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s982--86bef6e33a1b5bda66d3dc08fa115974555b3dd7822d4fc46f076c203fc2437f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7526bb753c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7297--70c6ca90cc84aaf589282f750bffb638559eb57521c1004a54316407032a2dbf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6734fbef4e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7204--e291fcc6a89649da82dbabf6a0cf70bedadc5f630d560e0087862f5621424329.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9762b451a8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75167--7eb51a4ec5a7dcb2c987c72ee9254cacd47a21e235de8f78e84334e23f7c8ebc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..deea7062ab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14844--1451d65038314c1163f621372347c8dd327883996170da1363745a9c1cecac55.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..67b7a8e260 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/anat/sub-fslPrisma02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36883--1353961b4b423d6d9c5386c39f291bd2b72f1acf0b36f866deee2f625e32b36d.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma01/anat/sub-fslPrisma01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..325fd3ad54 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma02/dwi/sub-fslPrisma02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1012--fc057653ca59259b3b39027a3a2a9bfc526d89112739277d5735ae82aff5a3b2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a9475a6c4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d0f5b86205 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7210--ddb03eecee8ed2165aafcfd96277efa03710d6c4cd042d56d8ac7acff3045441.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e1aef6b4c2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75691--b099f0fd9c09fdb62888afd605d786db931889675b845fb751d427f9b6c6cebb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..85ff7f8eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f9381fd2d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14889--8b8ca19e1f1110745b36d34d7d3f3180cfeaea58f7c985e46c576c06f78dd7b2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d15be0889 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma03/anat/sub-fslPrisma03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a04b9c0b19 --- /dev/null +++ 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0000000000..2611605a1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma03/dwi/sub-fslPrisma03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1016--618c3caf184308de567fbd2bce026864e680f0970ae7eae80134042826096248.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30d4dab3ea --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7417--f95ab24e37dd4caa34f6cffe20339feabdcc3f1070f9675ec27cb679da118478.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..506bbdcda7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eee03391d6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7291--0caff89e0a14f0f3ea9e870b78e66a9aa7525bcaafb914b7b58d7d65b2249fe5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..34e844bd32 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:17", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07265a290d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75360--b12e20e1d468545d354685d0cf12caddb92889100a2fee23836809c9f864cb4a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0f75e770b0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14682--1bcb819b012bc960c1a62b348a8ce9e7812e7e24ddda160cd4fedb0b823ee312.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94ec52191b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/anat/sub-fslPrisma04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37136--baadb6fd03eb732510b8d5a030e3727b7d18d7092e6c4734e99bde0194be0691.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bf63c847f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma04/dwi/sub-fslPrisma04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1003--b1968fbdbae223dc078b4d34318fb27867b7b90a77c47edcc8a6a685bb6aafa8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5d911caaa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7224--847da79ab2f7743d75d9e52768cd2dc7519a339ad5a1f318fe273ebad326b510.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a4c0e35b17 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7134--2a727f4d76c0a70382bb2f0e6470ff3a4b24f782c9cfa26e13308511b23d629a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b3a158e246 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75234--b893ab785f72477b137db3cac9e388a7e89524173f5eb12c6e0ec6ba7ff00d93.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7df0772621 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14589--6d892c6da65b2cab51c3326a79fd71a272a716645142dc816e3a64876f564837.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-fslPrisma05/anat/sub-fslPrisma05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37375--73af7a2f8fc3c8706d56ca6bb22e36b388980e2d75538a29a98783cf7fa82451.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f16ac1eec7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma05/dwi/sub-fslPrisma05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s931--824fd75e9e63caf45527665713f43201da8226fec95aef02015b07562cbb079e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac7220a49b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7313--f8b040417da63ad04131f3e91cd973aa4c45d7eeba6a01656cc16e2bfe24eef6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5ce30cc7e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7220--59e95dca28dd6e1bc25759440b6efdd30dffac0f193b67f69203c43027a54c53.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..243d978ac2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75004--a714ecfcdf0ef151a64e7485e7054d98cb8b00269a47b2438688678e3bd3529f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a5773b368 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14728--351debf2b652707e0ca177c8e5adc0a8fa00694b704e2ebe3d8c32101f72b57d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c8f899df19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/anat/sub-fslPrisma06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37469--038a38fefada3fd744e8a4f8e9d2b5471dcf065282e8a348774d2912beee6c4c.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..959920e0b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-fslPrisma06/dwi/sub-fslPrisma06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1005--299dc7deb9a55fa86679a58d0a52e0098dd0e3761aa53c106870dbd434936d12.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e34ff92bc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7188--66be6776d27871ee1f0c1e5f51ccd774dff83a029e4d7e5df690db9ac9b6fab3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4040417e58 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7102--9688f0af737c2b87b699ee746adcb42368b03803235738ca396d47eadd56e374.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e597ead11c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..322b5f110f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75343--fab6f3a199e2d1b8ae0661c5fd6dfd7f1f2f8de56f299c1aff4a6a2d0ecd5ead.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b9bf6dfac2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2153b0e49a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14549--a77525203dfd24cfdf314ee9f34b2240c99c98e5680986d3ea2e7ad32d6a648d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b521d7f189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..531f634f40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/anat/sub-geneva01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37636--50ae6db5ec1cfcef15e9edbd2307e74b2c94f7c74a0393915b982acb238eb882.nii.gz diff --git a/derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-fslPrisma05/anat/sub-fslPrisma05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bf1dce51ec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva01/dwi/sub-geneva01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s972--2cbf2d3b5a3c2706704e3de7ceda89716199284e5748d38116d78fd75b15f259.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7b49410683 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7292--b128d31cf9166206ef443b6d3e554b628ef6efee189d19b9712fec803cbfd74a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..33c9f460b2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:18", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..49cec721ba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7228--23046b8c1f74e4f8d76a6279098c6f1b212fd5382dd170d7309dd8bc169a731d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6cdaacc3ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75578--b77315ace72e815691b1aaab34ab3960369feac81217a9d52e5498b3aadf98a9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a318198c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cbcb57e515 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14825--6c51f10ebe8a1ba1a25f664d8692dca61e4c187ee9e94ee85e07fcfc69add6d6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7e28c4cda8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..802bf6f461 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/anat/sub-geneva02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37931--0e4bd5660f96123a26d412ea8253e8ff9f5877d3fa0dfcf7039e12eb2ed4d092.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..737519cb39 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva02/dwi/sub-geneva02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1033--76b67b5c89bea2c9f4d12cfb42f280b7c5606cfe9aca944c4a8e1b4cdf607a69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..51e604f772 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7257--5613efd111f48ca9047869927a84b46ccd77923b75d1e98ce8497caa98bf5e2d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..92b6e79104 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7171--f10a5a92d6b60d4a858bcecbd9be369d3fe15ac593130a54df23fd7bf51fc42d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..73499e2137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75360--5feb3c8c2aa302e392890e295baae687c01c5e1fb6d1807129091b942b6ece50.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a318198c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a15b86e3a0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/anat/sub-geneva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37223--29ab6625ac40fd3509db365cdd4ec1bb1990918ad4ba6c3cdf53601110397f33.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6382e847d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva03/dwi/sub-geneva03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s981--49ccb19fa7d860a49b82147b4993e961e66d5e293b50dfcc580b45646f29b897.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fb0f18de2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7230--6e32cdbef14eb9dc0f3147d1a06fb3742edb494d1881ea8717b14e491cd978b4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7b72f81c6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74943--d855fc91bbd6a379f97061007981d593020bd59b638cd6768dc28d441ab4fd43.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T2star_desc-softseg_label-SC_seg.json 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/anat/sub-geneva04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36463--3434bf95c4276b540ad2ed3711d618eaa78c1fd3b4917c4bff4ad3ebfcb708e2.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ca4bb5308 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva04/dwi/sub-geneva04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s902--f24616149fa2c9c04af171d22da4e3579a2eaf92efdbd5ff6676985373ae4199.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a74875a7d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c857f3be0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7174--92e85dae39af1dbc24e944057d4bfe4f705216be5ad1c66d21d134c5fc0889e0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bac062ea43 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:19", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7bcbbc6573 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75344--a900ce917cdb3bb468428e1f74f5f3e76d21cc5fc6695a7dd87a13d829ead62b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T2star_desc-softseg_label-SC_seg.json 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva05/anat/sub-geneva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37307--ad13b2b213cb316f0d4c5be57474a569a7f12ae210c06e7cbb4c8d670e9225e9.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva03/anat/sub-geneva03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva05/dwi/sub-geneva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..206d9b54c0 --- /dev/null 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bdafb9be51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7127--bfede36c518f515376d4e9685346e051d9d54ac8418448c4854888a07c6c261d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef5c41ba6f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75249--110fdb342da0031d621409219b6b322fa6184d67e5f6378b6f054038f006401d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T2star_desc-softseg_label-SC_seg.json 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva06/anat/sub-geneva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37603--267fb68605e019f7379225f0c20bdb940ecba9d8e9efc1f705e28a2beb5a249b.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e7edc1aa88 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s943--1ea4ec28387640ba838499cc68a29b4abf203b8c87d922a4ff88b697606fca03.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a81742560 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7100--452e64de106dac0bac8ef55ae3df8c19a510e1348ec3c1ec6fbe8055e22612b1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d9f893c54b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74559--44452f70234148abf0d2f8a4f5143e345d2c20391c3272e93cb5566e74b836a8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T2star_desc-softseg_label-SC_seg.json 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0000000000..0c07607387 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/anat/sub-hamburg01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36932--f5378a090c4cbc446a5b4ed80410018c3e2aca331bbc0da2117dea02ffc6147c.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/anat/sub-geneva06_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34b6639eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg01/dwi/sub-hamburg01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s916--67c38328baedee2569ee8e74c03290a655aa217fd8ea13c298043bf5d2470072.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb0e4b1cb9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7274--d767d9de5ceb46f47e1a1a3eee7be422fd0742cfaaf6bc2a99713cba2c92e88e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d45ea9deae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7216--6354e1fb7c217f1a861d302c938f78b460d537f8f2610bd04422b9199164c737.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc91cf2f8b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75134--6194d393cdb1fd995ecaf134530ef738c2ff6ea2ea2d24e6ae826efa638afa6e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb33039887 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14724--520eb86829bd52a83274a592566f6b20baa64a5142d225f085a2ffb001e6f87d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..468fcc1c83 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..342ec3a9cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/anat/sub-hamburg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37572--01075a9ff7e43206d25a2656e69af2cf2cdcafa24030ed193d53ac713ceb1114.nii.gz diff --git a/derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-geneva06/dwi/sub-geneva06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4bb89e31f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg02/dwi/sub-hamburg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s927--16bddb1bbe0f92da11ca9663676baf8ce67de060e853df3155b7abbb42c48933.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cca4b93980 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7336--fec6966f6ead32c812da451e9a2651bac366ee21cd9ea0f156ab63700a50dcee.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..336a638137 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c12519583 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7217--0f968c987b2919663c8c688607d799eadf555a75fdde3856bfe7d91a6157ce89.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bdcc7d2c78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b5b7c61f77 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75471--c3dbcc02fc5093be0641e747daea4c7261413a56f132d22cb0ddc66fd3d682d3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..87f239f56d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..db98b677a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14844--620b9d20c8e7dc563d177a4a6504251bf1bd9d9823c8d6f1022f192c397a7e10.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..468fcc1c83 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:20", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4fa044922d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/anat/sub-hamburg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37916--142e0bee7aa087865056c7505c95948d36f81316059a024894d9cff732cf0386.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..79000cf6fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg03/dwi/sub-hamburg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s973--23171dc26b7b3a9b06b85387255f412149ec3cf1edb44037c4d137ae7630b7a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c25791c5a6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7264--a4f972245f90b0eb6465dec1d7b9169f4f38e8b4068007e008f495bf19292328.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ed9b5e51f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7176--dfb97cea8f9b0e6cd1b607b8a4f1c404465c6672b9d8f470c510f5425a88bea4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c37ca0c9c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75323--c42004e585873f03a70ac5d49453665d2918a61bba3890079df80dfcaa1ff9a5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..78883c4c7f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14684--2e31728f2059e007544bfd9d6a470103890059b93fd2b82a6584c5c6517ebb10.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..93966ad247 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/anat/sub-hamburg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37350--c669e7db2ad836a71e3deb884c07d246e7b192bf36b79f4b25a2e0b78db813bb.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..447e8d22f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg04/dwi/sub-hamburg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s944--ff7b2b3420f24f773e6e5d2617a670372a5d3985a923721545fd2229b1ee2116.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5551a2f1b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7318--174cc08fb3c3c1b5563e4d33a3ff926fbffe2fefb697354d5819491a74dbaf35.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f3cb3aadfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7183--84023a0f5c6afab7643419d7b366b9238bc1c961f3567f4884c0626bd8547c39.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36e8e6e4e3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75549--db2cf242ef48ddb6fd76c73618f91a32faebffe12a5c3f1722487e68deafb225.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1020cf9ab2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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0000000000..8fe9409c82 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/anat/sub-hamburg05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38300--53e4ef2cfed82c9c7a385849e5ce029aa246be05da4cd81eb5925e6218871e6a.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3ce78e7670 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg05/dwi/sub-hamburg05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s959--1a382b12520f54c102b9c8ebe73916d7e4ed65a83f43e9bf80f72eaf37b49c69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90a5484738 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7268--60a63a0eb0f32db4f9fe5538ca42118c65005f22bf04e0020256f6d6b999d436.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d2f2829d8b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7159--86e473107d6ca63e77d991fea8288568b2d562b74d59cc9908aff894a16d4ef2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0805659833 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75000--e62372a8707ba5c663c6606d9e2f2feb966ba274b233cc86750af7bf2b02a143.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dba0157c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14769--8409953d27d2700ea93a0cb465817bbd3658aef8b6fec90e2c3730e1bb7eaa32.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d8871599d2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/anat/sub-hamburg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36735--003482b6c03aa27fec99a844d56a89376a451fd9881e2bf0fc292755db702a21.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e3620428d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-hamburg06/dwi/sub-hamburg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s953--dcc8f4c438a0674b0c1987d5bc529924718a9303eaf20fc71ee56124e8f60151.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc70e6efd9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5744--1ee9bf7630529ade57f70b38d300b1e8f787680b201d30d3fa425332cefc8cbf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..973c483448 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..85d32f5608 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5639--30ad37bef9f6f85b3ebee3542e492b9392dbdc34683e2e6a4a37c0d60ef63d20.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a67d44072c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..994a134179 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89309--e3b292dd274cdf868b56c60aa74f0b3500de6cf2d1b74973085b5c65f7b4d976.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b38b9e0a7e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd9f1a2ffa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14575--ee4559b3101fd3274e167d5dd5dce7f7919775bca99ea8bc6f6da96c395567b2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..39b861438c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:21", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..01f3e11274 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/anat/sub-juntendo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33143--b7fc18c16a0be52342e5d6561f165cff309e46d8f3ab5bb6d7a1799bdb07749d.nii.gz diff --git a/derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-hamburg05/anat/sub-hamburg05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1bf94b265d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w01/dwi/sub-juntendo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1310--e1079f6d078cfce25e3af5b9e202f0274eb541ef1cb8518454fa79d7f3ef3bc9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..241692d45c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5677--899798039e4a6d1c60770106cc1029cdc0c0259d79df4410711f90c255b514eb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eab3d78b77 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5525--a10597a1539542ed6870068741e612a44e6099036d34d8be0e1c47f5a16f3841.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..397c5f402f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..003101f746 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89274--b6091d83ff60cd107a6531bb24b52ce7b5c74d9c870fb41aa0f2ef144f9c2306.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..54a9e678e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14601--937a007b0f63882cf27b74dec0f6dfe1c99a3147075b864a3da2c0771804894d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6af37c5def --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e3be8cc13e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/anat/sub-juntendo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33250--fafe9a0e4e1939fcc09e600f6f4fa7ce2b190f35585ea2e533413939aa5e1768.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cdc0228002 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1310--92ece6c5556e09eba6a6c5b994f791f1030e7c26f7fccea32ebc5f9150a85239.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e87b418d54 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5894--a87d4caff465c9e70c9379c2289977c9602f80b3b07ceb6048830233da3a6789.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b255031b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5756--c64cb6d961f4911a5715d614ee58390706c63b442c145267be02bafd94860468.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..397c5f402f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c2185ff67c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89458--336473badaab8604c5a3664e92152ab92035ffe2a2013f69da8fc61f6acc6609.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..907d1be198 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14736--b064692d7a9545c648646d7df68b063b1fc886c0ad9319173e2fe93c4003879b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6af37c5def --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..47497232e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/anat/sub-juntendo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34023--764120f3fb74bcf399679a95718c9e914b16f28c01d165eb106f53c900a180e8.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/anat/sub-juntendo750w02_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f266216a79 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w03/dwi/sub-juntendo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1353--03a0a7dea01914c61ab5fe3413adab668b79e615003efd81155439f8d7398157.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..33eb890601 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5755--4d84ea9f0b77d9e89bcd52f867218606e4d9d393ba0cc599b8914c829d1338d6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6cf80835fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5620--1dfc6eb7eff78c70597cc70113c0fba07db13636dde053bc983e2e69e0d4ac3e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..397c5f402f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..375d5728cc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89193--c03bc079a01d4d7eaa03dbce845d7f0e0d6af10578740d1b03c078d52e1f8180.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..072854c2e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d61209c9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14658--4d8ac319130909a693ccb8bcaa15bbc04bfd6e4e5cbaed680e8b55e7fbc0cd8b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6af37c5def --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5feef9aa40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/anat/sub-juntendo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33862--03f390b9476e32feb6d6fa7fc61ad7d508cc79a335557c61484d3caef9048cc3.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w02/dwi/sub-juntendo750w02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d636929351 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w04/dwi/sub-juntendo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1349--f25761c10ec54bae8a2dc226ae480074f36b508148fa6c6dd4565904b0696539.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c17cd2202 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9774--04d02803e40fc0c7bcf106ed188677f9fccb5070ebd1a07fdf10fb951e228b4e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03208c6e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:22", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..639662b865 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7774--66ce77d7c6879fc70200b27c4e1841b7f52d9dcc5b5abb2a5dacce5929fa7cd2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2d5ffdf9c2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89458--564b5fe44f24741dcc223059cef74f01b6caf11976bb4b0477eb4b6c12726851.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..26a1978427 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14564--af5049a54feb89cd78ebd3e8396f54463017a896fbd4fbe7da346454040ed26a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8078d3b681 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/anat/sub-juntendo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33845--d449f6b4f353891ada56f93aab169a3c53a219ecc063e6be90a716cee6a548f0.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ba362a7f4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w05/dwi/sub-juntendo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1327--1aa99de1c11c0ec10453064401c0fcb0b4d45bc69b2bef515fe3cef27e7297a7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c302bf08cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s9618--d477496043e2f0c88af0f68d573bd41128f8c8509c5166a974f06ec0bd257067.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46d4236aa1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7806--f85acde7a48cfb948c2a6ef970d6824f8d4a7a1aa318f2cc3918f0677dc704dc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..64dec22031 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89309--d752a1898a89bd9edaea9d20def26f31c9de870c306a0363c9d5c0ca9d7bb750.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6986d91a22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14624--455516649caf1f4b699159b56a7693dcb5e5deac0b6200406ea90e9434a466a4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5ad3d5fd85 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/anat/sub-juntendo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33260--90c609cb104e6b7b1a35c69e792d26c339cfd7e36f7bfe52fc6fec1357644935.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a65eae9876 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-juntendo750w06/dwi/sub-juntendo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1349--c8ebed2154ae2b7e43b358c03d16c54c5ab8c88ab1f0a2841f595a0236eb3eb0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..355b523854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7229--702b3e271d644e6b656205a335c6f685a7143083cc6290f8866a7f7589bd7540.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..23b26d4ef4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7147--807ab9f2f4abcff1d3d5b7eca816ddabadf119d1e408fd9e62191dc4c4e130a5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a96fd50dfb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..825588ef42 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75003--ba06622e68b3f086bd99bd282d30801fceaeb11353b8b6a79acf7335f85007d0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..28ffefbfb6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14684--aaa4ad05382b0479ac235e915ad217b2fbc8d01225a58d3406afbcc535bed5f5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..32697d78d5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/anat/sub-mgh01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37821--bee5a7699a8ded3182fe6a8b1ad61d7fe2a614261dc942c585a31c7c9a9be16e.nii.gz diff --git a/derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-juntendo750w06/anat/sub-juntendo750w06_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2c1a0da831 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh01/dwi/sub-mgh01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s961--c5aedd31e99af135b441f4fe6c3927d3e5c8191a79c9778e13f5e0a67b157122.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..167b2c4050 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7189--037503fb90245271d6e549db6783be2c78300934851fee9ae9d5f38a95623c16.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fc484f764f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eaf5781b5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7212--b91dc746b84cd39380a95381248d1502bbb425835b8eb74d8c677ff79ce051f0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T1w_desc-softseg_label-SC_seg.json 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a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9343f7d35f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..023ec4f4cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14552--2a0bb0171ad1027703e5fcaa28133c547b3a5866cc6174ca7a183924c308d2e0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d76d7b5832 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:23", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh02/anat/sub-mgh02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz 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b/derivatives/labels_softseg_bin/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..723b39645f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh02/dwi/sub-mgh02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s922--5703d152eb3a2c21e14926c5c1991741c115cb911c8da33bbec948063650af14.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..369e83e446 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7222--04dfe1ba5dffe449581fbf8ab51039377002c2382bc48856b66de97753d876b6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0b55cfad47 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eeeb67f473 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7195--b7a654425e5a86ebd59453007352b593021a34336106673345304d6f863ce35d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d89ae0013c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74984--dd41d09ddb8ada13c89cc597127bf2680c0949e8e6b8e2daba65ef084773bc6a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-mgh03/anat/sub-mgh03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36562--7d881e08cee330d928b37f4d2a7cce276c49de287f9944cde4e5d10751fc66f0.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh03/anat/sub-mgh03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e3d9b32ad --- /dev/null +++ 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\ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d35cafa16d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7254--acdf93f0fe1de9d23aaa77a29d0d5cceaddf353e15ba756626fc67a771ebb7f8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ 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b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5980f8b326 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14852--2145e831a87a5222557f36467f99a89b0bf662b3dc1c87948e4c23f588a70d1d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh04/anat/sub-mgh04_space-other_T2w_desc-softseg_label-SC_seg.json 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end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e456e45b4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74598--643778fd1560c40572711cd5f46cc50fd73fd6ccf60e5021d781ba7f3db4edf7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eccb354d88 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14802--41fe74af1a2ff9caebfc3fa313243f379db3c7b7634c81fa51cd0f61a579a82e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4a8f9cd09d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/anat/sub-mgh05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38397--357af48e04d84500e6c99ffce92925bb3f8aef98869daa9f7d8276820e3adcc1.nii.gz diff --git a/derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mgh03/dwi/sub-mgh03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c322e54c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh05/dwi/sub-mgh05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1042--7f10e7a997c7d63cef500f9b27ed699817a68c66bf1370db5c6e6a5affed18d7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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0000000000..17c2a69d61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7112--e3cdb8573e53dd83e8e820b01ccbf2b2570974aa06af2fd8b34b733a6f3ce105.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e94e1f4f96 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5872bc7bc2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74523--55f34696eeef6e5099fba05770e73343f9ad329dde71fe46ee2d035c9faf2d10.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5184dbc5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b689bdb188 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14621--0cb0951757ee7b44805f3833c468f29b2f4ac94e09aa1bdf0ed511b889ff443b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..908aee24b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:24", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f5d49d228 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/anat/sub-mgh06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37866--5a9d5aafc255a8f5e5582730b4d0b345e3392faf2253ea14981d840e35672347.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/anat/sub-milan01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..131c0fb661 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mgh06/dwi/sub-mgh06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s944--9e6c50b877ac545b52a78d9cf739ba248ee0de5b7fd1ca9f6a237e8080aeac99.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0288042e8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7171--f16123851986097647825427db26c9021ce31f8229e641c2dea59d9aa4ee3470.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..325278ccb3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7157--4941d397cffa6acf343151a9c2c51bb634f19997a14677c5209cd63c46c68ba6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1bf2e05d78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76368--6d0b937c17134ef36881884fb260012da5ae0a5f435fa0085e19e5deac68a2ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..448e4fb760 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14624--183170814eb4cb9884286e2ea09b27c5f849e14bdc990463ee0617466be80433.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c32373422 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/anat/sub-milan01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38635--afd999b1fe4b346ffc6287bc0fef687bcdfda1c111b4981b632ba4de19ee54ac.nii.gz diff --git a/derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-milan01/dwi/sub-milan01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan01/dwi/sub-milan01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-milan01/dwi/sub-milan01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan01/dwi/sub-milan01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan01/dwi/sub-milan01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45c61f56d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan01/dwi/sub-milan01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s943--8e091d1e0d9b801121f7ea0f869f4c2de8c85f907b0cd854154764dfddcb9cc4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dcf6b13384 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7192--c76918d798375b71446228af87110110505a90b808c0b5066dd33cc2812ac45e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c28ff97abe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7099--48d13e8b339ec659bd8b3fb728b04b2d87c0f29aa2da103704829a7513f00a64.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5030b10777 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75470--5a468a26129a5a9fac5a027ac427f9b6d9ac4095653689b3b44a612664db026d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..929f52a5c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14587--a82977b7f69eae2f26503d8996a072dbd02228c736881313ed7bc001c90d824f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..210b268404 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/anat/sub-milan02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36745--4f973f11f5bc0f1ee64d9ee0cbf94323bc68912f5e81ba6b992ec36dd60b2b17.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-milan02/dwi/sub-milan02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-milan02/dwi/sub-milan02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan02/dwi/sub-milan02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan02/dwi/sub-milan02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dfaeb4dceb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan02/dwi/sub-milan02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s900--c37b5cbb2f39c114f111ac655fc8ef5d847ec92edd1842930a11430df137cc7a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ec2dc44763 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7269--e8d1931928da49ab81504bdf74d14dab5990bfb578276af12d2981ca276c9d69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2e3f43adff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7161--de6ab4fc3cb4540f50a6aea3ec2277ce81a426663852e516af116c6d8f97daa5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..afe49a2b76 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75901--9bc72e2ab71390e7fe8da8f5907bded337dbabb15419ef5bf850707939e5a9cd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ed6ac38da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14678--1acfdc2050379b64e41aedd7cc8198691506297dc28101201a5d3d37ae78bd24.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..feb19031d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/anat/sub-milan03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37811--72d3ad6694a5b59f4b0c947fcb12078bff56c918124b35a5c762f3227de7d9bc.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-milan03/dwi/sub-milan03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-milan03/dwi/sub-milan03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan03/dwi/sub-milan03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan03/dwi/sub-milan03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..56ef7e2362 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan03/dwi/sub-milan03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s927--6542a8d2ea7d03df2e7511465cd63f8c1f3a15e8e5841d2853a5ecf125666a98.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2c94c51c47 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7277--808e4ab9c94385867ee767300cb2361cc5206c9e4f5633651901b7d2b2015790.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..790c0976d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cf1bc1d6e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7175--ef53734d5eee9f3679b67f10bf0e7cb5870bd502bda4bbaf5976fc67382f4787.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4b9d353821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07602ccd76 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75668--795038304d9da4773e4218b1caf48b6e35370321dfdf5e06cc72669a2cc3121c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ac97406c9b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cf9f8626c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14658--ee596914f5f03d374a1ace4602dead7e0a2b6055ac003d88ec544359f1458839.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81fc017305 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:25", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d3ef852a2e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/anat/sub-milan04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37228--dcdda69849486109e2d04aef3455101c64e7d0558dd1c4f8007c1780d5c854ca.nii.gz diff --git a/derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-milan04/dwi/sub-milan04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan02/anat/sub-milan02_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-milan04/dwi/sub-milan04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan04/dwi/sub-milan04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan04/dwi/sub-milan04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c3744840df --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan04/dwi/sub-milan04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s975--3ee60bc3dad060d128fe34ee34da459e59d0eed5ecaa0399c4c356f426a7ff7e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d891d03e39 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7296--525a5a66439056da65c1abfe69915a09cc66e756ca62d7c653a776710ecf6f0a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..969864d054 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7211--d96de4eda5dbd429eda3908ce8126addb73f66b660bea371e5f68805c796085b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5c3a61ad2f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75533--f633249bc0b54d407b0cc09168913978be766e4f939434d67a4961079474b74f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..09a9c2e4e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14678--cd342933aef673d55b56e6d08734442f61faee88f2b26e1707fa55b6b3451333.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..146cee890c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/anat/sub-milan05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37246--4ef479bcbfe98baa9fa7f7c59ec0f88465c6f9344f39c8a0e92524cc6d74705d.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-milan05/dwi/sub-milan05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-milan05/dwi/sub-milan05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan05/dwi/sub-milan05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan05/dwi/sub-milan05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d1e06dfadc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan05/dwi/sub-milan05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s923--00d4ff3f2a5321614457f266319219db92a712c216f9e9a4c4155568043e54d4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e3a61eabaf --- /dev/null +++ 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} +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..935c6623cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75612--649b7087de2b1def69c44218af6e2a1f5c395c2ce08b5dfbdb94c761601ca740.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1523f396c9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14786--e1ee6e3c5ed6932d710578b6d7d1870796c85ad0072f204e7b726d5036f3539a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a145f7ab8f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/anat/sub-milan06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37530--2515125b4b7ee0e382a7fd857337b996da1305b76c78396d9a9959b69c4ffa95.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-milan06/dwi/sub-milan06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/anat/sub-milan05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-milan06/dwi/sub-milan06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan06/dwi/sub-milan06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan06/dwi/sub-milan06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7b967ba1f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan06/dwi/sub-milan06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s983--cfd10185ee3f56ca9438978101deb6d6299c0ab8cacd719d496c4d054c1c0e55.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5a5c705dad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7228--162cb7289ab8216287343fe4e01ea8628c25c3ec2262ee1c282b8187502427d8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7838b7a0f1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7065--7d1105b814c9fb7a1674ceaaa5ad55568fab614765b7cb62ad546bd5b63e849a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..faf4cb618e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74945--74b8c2008e8187f995cbb88499b24128584e9bfed08326b4659576e9c5320e96.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7041a9738d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ecb599130 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14600--7053377eb049c0ccf27bbbf6c0917e56a6dcf044048e924c5cc29f4263515294.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..93888968f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df618e1ec1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/anat/sub-milan07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36555--8a922283848f25f8491689f9069ed09b04fc8ae223716a71834903853ac06fb6.nii.gz diff --git a/derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-milan07/dwi/sub-milan07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-milan05/dwi/sub-milan05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-milan07/dwi/sub-milan07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-milan07/dwi/sub-milan07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-milan07/dwi/sub-milan07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5772643301 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-milan07/dwi/sub-milan07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s889--4c091686a7f0e02dec02d48ed836ea504b00b2b30a4b6265ca68d7944e7dc375.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f71238572a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7242--af14002638794091176e255aaf61601f38c16a0cc9a9a82e192f092f4c53d2c1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..74761e0852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..531ec74e6f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7185--23af5d1352ea6336c1c0b485ed9556610cd55e3ad91f1f7621115b849d0e536d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7967ff8da0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:26", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..521790c4a1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75088--1e4de0a9dc405367fc5330cbadd8f0e59ed0a7afa363a624e0a7a95dd3a81734.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..42d5c92749 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14639--7e3ffaccfeaf56f586f34a6c489856e93642617c2f38f72df78e6793d5e7d977.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e03c2e5b15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/anat/sub-mniPilot1_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37509--24f045c8e2c736efa096153f00bbac7f6a9ca0ff3cf7bd2ee00bbb4c710193db.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1011abea3a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniPilot1/dwi/sub-mniPilot1_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s922--9030c88b3ae78881e42c2e819ba1c6840230d2c96d9003cd8d996724ef5a1e82.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a421cd108a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7329--4dcd87244ee904060c65edb2e857339f05e333414b4b346cc97449efced883ad.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ee78f48bab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff2f769499 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7183--07b1548806092e79897d5d786afd762e46362a59ce779dba0689cefa8a886ad9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..86812d65fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..66421dd1e0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74890--d24696894ed8bd32d34bb8f1f2b63cd358ed843e2e8565e4c8ef87579dcd0765.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..892b111d7d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c748bfef7c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14650--f7c607526242a799ba91bac02a9c133197b974a6f68281d889c7519b3feab3c9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..365a7d5dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ed38a8ef86 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS01/anat/sub-mniS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37046--57045fb9cc7b2e83bb3dc1659ff776147e0ef2b83c9ac121c24481d661a63ca2.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS01/anat/sub-mniS01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS01/dwi/sub-mniS01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0a509850a --- /dev/null +++ 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4a6c9808ff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7083--0e94b7a6695ee10bb60a18c776744fc393ef20f40f98dbb20ea0dd2d7d1128aa.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..86812d65fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..80c7a1e6c3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74926--eceef37f2abf8aec679bfe3d4b393f5e7de69e7fe1be5c3232e98b97fdc9ddec.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS02/anat/sub-mniS02_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-mniS03/anat/sub-mniS03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:27", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS03/anat/sub-mniS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS03/anat/sub-mniS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ae0d940755 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS03/anat/sub-mniS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74687--b5b91cbf777b26ad68af6645f699d74eaa5a56cd6f1a868b0b086970dd6da77c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS03/anat/sub-mniS03_space-other_T2star_desc-softseg_label-SC_seg.json 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f8358936c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7231--5e0bd1e39b3a904a320fda8aa3fda587c8ed3d9fc87a579d95805fc1472525f6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aa8a1eb6af --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75467--1115e6fc9e2d1f3a477c9ea60a10e779fb721a9de2848d46850361d99f88e430.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f4d2f5286 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2bfe464a82 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14898--adae81cb88992377d8ee5a36ba9dbb70ec28c6dc1165f7a7a1ee7766c7b6eefd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e3f1b842b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/anat/sub-mniS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38322--72f65d034a58001d375d56d8414d46e7742467a2da5910b151b6ef8f7b65025d.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e08549edf8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS04/dwi/sub-mniS04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1017--d4d2017766d26be48d2bc919fdf7a54b5a62a03cfb470218a2d2681bcb53cfe0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dde20f66b1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7180--4aa0f7f720051af4fc9faea5dc744acd36ce394ad7016b3e5e727254fb00bf62.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ccf82f8255 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7109--e587d74e024c20b1332afc2a838c66130e9cb182a9a04aca1388c7bd2dd63e6b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef2adca5d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74883--473ec09447f81b5afb60bec2063eeadee7031cead58c3bb410463d1f6ecfd345.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2star_desc-softseg_label-SC_seg.json 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+/annex/objects/SHA256E-s14499--1deba1fa146006b664dbfbfbb27f71632a238f113acbf3e1d1045f186966ab6d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4ffdba3c85 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/anat/sub-mniS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36913--c54952304b26f6a2af089a9688cbf14401e5bd734367f7fbc1cff7ca22814c8a.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e314c2ea36 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS05/dwi/sub-mniS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s859--7ca5d14d49bcb04ded9f8057c336c28b3c3e0790a5f94441214fd5c1eca926dc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..29e50e0330 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7182--860395279dd564e016df8ddf009a3d286bf8f73821856c25c168d4b8c0625cae.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1e1860b0e8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75549--3ce3c289bd8822b71ea4db5b38c9be31353b748f18f0449eb215e29531038dd2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2star_desc-softseg_label-SC_seg.json 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+/annex/objects/SHA256E-s14677--559a850b062f36ca25a3bd172aba9f460d90eef121afa89d31764abc8a5e953b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..23dbd13ead --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a77d54b364 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/anat/sub-mniS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38244--01b3c8fcf798429f7c629ffed43eb1e9ea14ce29e6d5b2ba01bbfe1e5b041bd1.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2debc4300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS06/dwi/sub-mniS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1019--1dc80c3e9dee0e52dc30de11ddc2873db4530ce88f4e964234c91b00c0cea948.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..30d8795d06 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7280--893482319153599e498c96ead2fcb04b5ac040f88a627bf8374689457fe7de55.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..54faf2c332 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7147--7f5fbfb3b0e55c35ca036d21d9c26ce330bfd93e5204449d2e40bf875deade18.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e1ec1fd19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6d04845f5e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75278--ef4a378d9758a738ccfed046d0c7b44569064d5b456882d0db7f5c21c2257543.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-mniS07/anat/sub-mniS07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37462--b99b25d2514e5f95f64a6125515db2b4d4b6f936b2203c3290df539eeeb7f404.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS05/anat/sub-mniS05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e73c5d233d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS07/dwi/sub-mniS07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s928--3b176b9274a30ab11a0c22e72c2b0f4c35a791a9009eeb8a833e048a9347873e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e33a843259 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:28", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..64077471dc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7292--2ba2bacd17a416b8f76a6cc62a71230f250e8a80378c9bee6d9b8978e71e1df0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d139c97136 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75328--5843b8752e38072fd03d94b2fe111d74f863c472441e6258ff1d6d1064bc4f33.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T2star_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-mniS08/anat/sub-mniS08_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37021--c6ed17d13d59879494040f49f86cbb2b64e489e0025ddb601a43fd2f1aa82ca4.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d853bb3d7b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS08/dwi/sub-mniS08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s956--3f9fc8d46dc4e8cf6fb52d4f0c87939156e740dca025393ba971b2684a361075.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5c4971757c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7244--7a3bb109daeefb13255a9498c731309d1cb91683e9ad90f86020940555f072ff.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94f9fcc11d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7149--5ecf869f6aca32077c9ece9bca91894952f90313d5e3d5e41e248b013d22415a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..35eff9ee90 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75240--c34f50f5de53737bc8e858cdc103dc4dec07d658a29ac7babf41afeea61f486b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3f3a6c0e7c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-mniS09/anat/sub-mniS09_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37129--b202aea32de0bc9ff53fddfb4b2b08769cdeb23e05c815e380a2ce38d001f723.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8453bf7f5c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mniS09/dwi/sub-mniS09_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s989--6c93cbe913c9d5c246126409755baf3f2e4100913b47cd9f8f7ac57e1b94d110.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a105e5d20 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7252--481003ae1fa64ffed97bb39e45f3a939857bb11922180449a3d2e242aad8ca0c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..918b526544 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7180--675910ff7e4c8e66aea0e6717f4e09f8ea184c9075f9b7198fe111bca59c3760.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..62afbb58af --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74789--1bd699162d008122e599f45b8f5b949fe29a7d47ec8a3e9e5887755b12463143.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..11710c458e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14591--dc3a9674c7ed699263371c8fda734e53324bb20df80e65e981b1c6c36aad3705.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cec76114f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/anat/sub-mountSinai01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37185--009f49262a5c082eeb7e6aa347816f9477fbbd0874faa4964bc86545402c3d4a.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b93f78f0c5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai01/dwi/sub-mountSinai01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s997--32f293d5dc75131da9df8f3d3460cc3bd3045ed8a920e490b06d8df4d140460d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..49a4cd4c40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bdba65989c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58fabc1b30 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7170--eb6962f9bc892b9c5c0bb2791ef6320a2f2e11fbde1d46cb43a185473aa6738e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6646b0059 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..908aa419e6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75449--dfa40dcd045187b277fc638a3a1c42a1ff284fdfc909bab56ec78989f8e1c4b3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cd8b25c2e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b44ee7d77 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14701--759de39ba445073afa4ea98e3e4f292399bf475cf70b5bf7b2547a975ab7618d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3ca3b7bd82 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:29", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b1dfb0a8bb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/anat/sub-mountSinai02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37180--d0667b6a431d8112c383c2b9f42c3a43322d36052544078c4dafe9081c07d460.nii.gz diff --git a/derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mniS09/anat/sub-mniS09_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a532083d9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai02/dwi/sub-mountSinai02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s961--1e165b6c1a12a2e7483d051c134290e2c07e20d9409c6931bff5ee7fd81fd313.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b93c4c577d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7237--20c04b1b8872fa23ea8c4b3e8b5a05a491f8d3a6d5b2a0a11bc9e0ec88167bac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5d92f6d2f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7175--8d79a86369f5d6e51730a3aec7857860e48d6a4ada4a98fc7001247c3efeb814.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..60e0c6d91d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74925--a75e58772ad27fa76a2c2bd9ac39ab14dede9e098ef8de78e26dfb37de8cc1e8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72b8113ec3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14753--1be07a86c7eed1b33d2851e1cb679d53f1f99b51fabc6924b70b44e8e87244ed.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fbe7912ae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/anat/sub-mountSinai04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37220--5b29142be780d34b232e00c4f15a6c9c754976a0f8fa01e898c569171cc7de10.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..86955bf4d4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1051--78df042cf96d4cb647e0d5e2300cdb26fdd579f6e0f08b85dbbf7674fc2a3571.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..68c4fbccc6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7234--ea7f94bae5c2cc13cd564f6be3020836f8c3c99550f5a504fb0a551e0a4c59fe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6b2071144f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7197--040844840b79add14dcfed43fab18a2e20817000e7a73de38b0946dbae9ca2e5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aa2f938458 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74786--e6396f09ce7b7704f9aa8cb20c5077970b2a708a51629f9f16e5242529615c67.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..11d31316ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14717--029e40f1b273bb3af336136e1425430c1b67f131daa906baa7336f2c07b92239.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c4a1ba731b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/anat/sub-mountSinai05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36935--6bd3d54b1eb70841428a53b396b437e9a13b1a1e88b41f4053134ca6d2ad771a.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/anat/sub-mountSinai04_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2b24bd3134 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai05/dwi/sub-mountSinai05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s969--d7399fc38f14259ff941702b29638f224e573809a61b17ba4f9a7ebd393200a7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d5b4e58f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--137c7c34817147a09ba7259b8601eb5e3da68419314ee208493695e2481687a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2af8e5efe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7183--d2a94aef2d0631374735d27a8023c84b89afb8c9155c4958d2bd7a0d5e30f9ef.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95f6628788 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75092--84ed3c57f12ee6fe2a5c92bb19f48b03be6a6ef060600cbdfeaae4f44f031797.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd0fd397a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14691--ba21d12fc5877a4570f131251deabcc9676b811510822e1ecfcddc03d717c808.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58bca29707 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/anat/sub-mountSinai06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37627--252e2a8de57d8b8219e6fb7713e91b0f31591e035052b0a4d25ee80c0bb9553b.nii.gz diff --git a/derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mountSinai04/dwi/sub-mountSinai04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ac39875f3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mountSinai06/dwi/sub-mountSinai06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s973--7fd39709b61cdd61a47c8a7a255995b20c7cf4ddf6a11c20091918f309301885.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50cdcb5740 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7299--a34e6ee91da877e93929cdb2aba2aa27072c63ee0378a528e301481b36e03e13.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4622d61854 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6a6e7fd40b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7231--148474813cde036511e30d3f4af3d5ed5dca6179afc50a5aeb65452abee9499b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ff860e6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..65b10552c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74984--4441867445cd3f8a685e52eae57768050de2aa7012c2fcd3ea94044cc56d32f9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..13e846286e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bc9334e470 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14627--561929824371c7477be507f603af31eea36d4a977165e72bc7e6f5a5e0e199b2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..42d532c9d8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:30", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3fb7965e85 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/anat/sub-mpicbs01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36356--fefcf3767160abc36f28f6baf1b528bf13e15c1aeba686805b75ba34e973ad33.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c1fcea4ae1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs01/dwi/sub-mpicbs01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s920--02ca72e48ee146c6d126ac1d6d2e320fa218ed54ce3c241f981df92b591f5fa2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..35e72879bd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7357--7be81543fbc605e2fad1a70196ae064419a7b1210386d80c14386b231c62ec96.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7866b830c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7210--7a96911e42225de2349538848ad5445bf9d99d0160eb74a0e3a06636e3a51c2d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..031bdfc879 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75219--0f0af55d6f0994346971c549fe618d21cd1d30902652224e05b86a160ba1d9d5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cf5cdeaef7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..979aa32dd0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14704--77891f43bab86c3f6168eb8e04d861dff267d115303fcfa7e7f54c818b85b22a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f5f4093ec6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3fc21d6d62 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/anat/sub-mpicbs02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36607--ad6cb43e5541d8c2f21cfaf4595e6c21eb1442895706eb5292fa1d5bbde2beae.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/anat/sub-mpicbs02_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ed4b065bb2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s987--5578265dbade5900020d5ea29b0bfc521ea795dfc729e3f78158b888b4b8d548.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8752e1445e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7374--60c8c3ffbd3439ec6d771c345a14160700b48d42111e18d40eaca09a4a8858d5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..76429a9e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7241--ce1923ee01a5916968bae5e058a9a9d3f1a423a057cd8d3c6d792584dcc33960.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94f3ca780e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75404--be243bbce8eefd433fa8d68e5f849b129ef13e65dbe246951fbc200382fc2116.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cf5cdeaef7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e06202ea38 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14894--047730ea903a15962330ec2a2278bf1c7609ba4086420c175e93ff48e907c001.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f5f4093ec6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f19f1ab156 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/anat/sub-mpicbs03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38680--fc5336bd4b38c1cda74e6d010a9cd65ec3fe69d0bb15d831efc80f4f4ac3f655.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs02/dwi/sub-mpicbs02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..24f5a13dd0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs03/dwi/sub-mpicbs03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1023--78cd96256554cd06d4ddba3f016afa627196836496e93a83d4456c3535689b73.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f33ee3be69 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7297--0113fc4ecaf242afd6eb16cab026a0b204d33ef5fef3a7af7925020886805a91.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbe16d664f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a06d82563 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7174--90effe171a4dd526f0eb1eb7f2599820c8e0ee01625dc3ca1251b234af429172.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c70846a627 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2c1b35cab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74964--5af694f2fa3a6af282fc2cf35961670865088c0ec5431198dc7e471c86c445f3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cf5cdeaef7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..393c2e6406 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14721--9fbf13ebc4294bc74b892285a16a3daf52d1ef6d11b0379059026eaec40b6c2e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f5f4093ec6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:31", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b317c6dcef --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/anat/sub-mpicbs05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37520--f2dbf5862c225ecd805ec1c369dcd9135ad670319fa07f646a33cb7512a851c3.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs03/anat/sub-mpicbs03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b090b0d206 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs05/dwi/sub-mpicbs05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s949--75748aca554a8caa2e371b265ede5bbc1178c89c2edf616212e0bf17f59ccc97.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b0b203460d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7230--42d4f1777e975ce5f19fee92e9b6434850aaec7898cae3196cf34118caba07aa.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a38b04958 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7162--1a089bac37967a5e180f3f153026284e44b9cf7a85844ed96cd8805352f11f18.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8c95d6b391 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74981--66a1c72bea4a5ff126a9da6ccb8f623ae26966ef09faa1eb97680342d4067543.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2star_desc-softseg_label-SC_seg.json 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/anat/sub-mpicbs06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36940--6fe4baf1f7ecfb9d99a2445495481e85eb08a9cafbcf4fbbbde814c92eaf5894.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6c36242aff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s911--2a3a11695ca03201a264c4490d08c0c0bb4448e240df645aab58b3307d2b2210.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..260c7c34a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7241--bb16c8f8178d361408055c81dc3f20e7f58cf4a3841777df522852a40b27ca9d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac9299f649 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75120--844c27c9ca8e0b5cdae995611b5e47cc826c0bafdc25cf44a9e5b65eadc7ed4a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2star_desc-softseg_label-SC_seg.json 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--- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/anat/sub-mpicbs07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37655--59ee3f235ffd066347258658c6fb107f653223d831514a3b3d2b9b6947bd7e1b.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/anat/sub-mpicbs06_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f322d72f60 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-mpicbs07/dwi/sub-mpicbs07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1004--6259608a29dce5dae897cdc65cebbb50198216550fe32de1df589045a38f8dca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7fe5c18b2b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7360--e77bb5962da85711fa1fe4725bd15e91d362b23a32dd22e09caa2f46642e6714.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ded733f9b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7329--ad6c937199b741a0dcacb30ec171a89fa50c2e9f2c5388543ac106370acf502f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..58cfdeeea6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a513b7f029 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90809--be22b91c8d79ce96e6e985b2fece29df6354b9158b555940e49bda2a2ab717e5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d7d971187e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d83ba9d8e4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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0000000000..bda5b96c65 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/anat/sub-nottwil01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35458--11c552178e7ed501ab20c319d4889888c1f3c4eff9c966dd136ab2eebaf0d7bf.nii.gz diff --git a/derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-mpicbs06/dwi/sub-mpicbs06_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9f63a6f2b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil01/dwi/sub-nottwil01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s934--c2571ca5c25603054e92a8a15c1acf910edf2c75af0fcf5a58a826a70572be90.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f813a0ef39 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7361--73450f4347467be7a41bc3b4b464886ffeace28a707f2a65fcb5b5cdcd39dd3b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fde4070eba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:32", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2deb670e9d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7368--a4ba3335ec7710772d8fc75a6740c359653e36fce9cb3da5179635586a6999dd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_space-other_T1w_desc-softseg_label-SC_seg.json 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d98c270e1d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/anat/sub-nottwil02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35397--61a3384da1a090dfcb4c26cb30bf25395b1dedcdcaa4045bbce9324aff7a81ef.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..21519870c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil02/dwi/sub-nottwil02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1004--a56049c256e63c5e5d0a26da11baf843c05608d76f911f2345ca4b65e78ce1f8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad141281cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7367--da5a933c309bc6c44b42f78b965abb7088dd8db9968e0fa9eff4a0afe2875251.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..05fc67db80 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7366--930bc42a6131ddf3d5046d5e93282ac2cc3434bef195aae363d9854b81ff89a2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d3635572db --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91567--430c1785b7006e3234076d4cb3ee898f42696c752599b8111036841bdfa7abcc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..918542343f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8084--6d7047c88a756fdfd2174f876d1732358d345d87a6cada2f70a2f58bf0a8c1d8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d28285a18 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/anat/sub-nottwil03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36355--412ec43a40e068ed0f45ba9d82a0cd502790b0f0f3db38a0ab7c0a997a272d20.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7d305e5e00 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil03/dwi/sub-nottwil03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s968--c3c2ad67741a0526faf187df419cafa6d5c66e339516d19edd98a446c1f44966.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..63f96868a8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7395--4619d3dec1868f640206d6b712af608f5d4f4c9a81c94df3f26df0a0ed7c247b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..816c03ec2f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7345--ad891afad097cc4ba1479da512e48ecf02524dadb6c82e966cf93315ab6636a2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e3e54bb38 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90816--029fd0f1665063d2eda44b53b8fe3897e7fca44cf70eb81594f022af42f8467b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dffadbfef5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..910931b2d9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8197--57fc75a4676903598c88f32f2e4d41001534c3a1a78168deb5ad5cc19bd019f4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f6dc3f0a49 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/anat/sub-nottwil04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35503--b7f254df7dcefec8107678ce43fbd3db57edea5a1e10e493cfda46937d4f8ef6.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..332937fd43 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil04/dwi/sub-nottwil04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1063--b0d10c4ea913a29131190098ff2e8e2958c49e9668bebec618211799924b83c4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f7a1be978a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7414--f9d2e45f53cf9b073fc460d9fb65e595a614e2f853794777a3585c16c97d932f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6cb5673b4d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7393--de4a084ae74c9e91979e9f24dcca82e0c1daadae86218a25517f837fb8d9eceb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2f00d7c9e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3f1db31105 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90561--827d40255c55119701c5196625446d68c52d0343c5dc210b63aa627d4a9c93c0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2star_desc-softseg_label-SC_seg.json 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+/annex/objects/SHA256E-s8000--2cd53140df3d558f034e2472f77f9c9ef467b171a5363ee4881176268d32ee90.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c8e383258d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ffe9948efb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/anat/sub-nottwil05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34990--b3e99183299e23295f26b9f7681bad8328845a1b5a1f6dfc6e19efae2d70fff1.nii.gz diff --git a/derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nottwil03/anat/sub-nottwil03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34361b4ebc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil05/dwi/sub-nottwil05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s970--d972ee6cd7a9a5bf5da8b00b66d30ffc5166503c2500924973142b8afe05aa13.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e541906f4f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7349--3740410fa74aea8982519c4d76ee1c54094846431c4c49172a96c4f5673e2cc2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cdca1220a9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:33", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f42d49251d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7430--f207fe2f23f869a773104d280d2e6f05bebd0de18e2ba776fc781ef98d9db1e4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1e8dd90c3e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a8862d5473 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/anat/sub-nottwil06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36960--0bbc62a6044b15d2b5e5f0572efea5a3074d922491f8157f49b6a32a48971890.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc74fdac58 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nottwil06/dwi/sub-nottwil06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1006--70433ff0f91a541d2e2eede6da4df626b0c64c34015769993834c0324112ac2a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..569103aa92 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7222--df97215327b0b34cddf461d230d0652b3612f1c6053e04164c84868b2816470e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c1a618c22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7176--df7221c6f65cf27a39e3ffb0f8bd5cd8c73a0634896840b0be18f2f00bf2fa8c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4369cfdc5f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s76100--af84b33866bf1beac1cb2a1c6788c30da7e4e7fa300f6d1e11e10eb2b469d65d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz 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diff --git a/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b71190d83b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/anat/sub-nwu01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38860--8129bb2a20636e4a62332c5bb5bf0c9832cd13e9297f469d251650330aac8b6d.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72659869b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s925--20043c05950b94c1c467b480bdf8b25c01bf83ccf7da9b9e5f40f83b5ab94403.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c53fcda821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7137--9d6df1fded77f9d5cc7258f9cdd6f38c22f6bf2abe2a0a85f1804ad282d6848b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..637c1b0b36 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7065--a981124dbc833640564cf5837bfb2787a51472a59067fe4b0851e9cf957ac5f8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3008b5b728 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74748--c3f95beb4db4693bf0752b0a04a4de8d3eb1016080cd08d11a1ce7bec52aa7a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b387de6186 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14398--5f62abc7e5aff1e9f1d6fa3915bb6c7ac990a348ba8e727522747e65a867dcb4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..20655c0ede --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/anat/sub-nwu02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36104--87008e3bf1b317bb08eae3aa1426ca96d1c50373c88999e8a7bd6af7aced1900.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e132114ba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu02/dwi/sub-nwu02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s872--ae68f9421226738e3f5a758df215efcb9fe8d552dbb28f623c54a0df1f69d22c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c54c72c0f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7200--6bc9dbc7f368b6a03180b234a9b4beb63a0ee2139ed477d25470c0cdaff4238a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c99d0ff7af --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7131--bed2d8de070320677f977c91b2f15b7d638ba2940f1327db8720ed19919a20b0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c025f6b585 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75136--1a2acc788354ca10f045d2802ee23416dabefc942e188185aaff4854ac403e5e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b064712f8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14626--b1b4ce3276aae8e5da48437b13152d2318d45b6fe9d9a53aef89aefd5f546eab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfa9c94703 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/anat/sub-nwu03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37350--e61566791d7243806dd18f66658b05e185cef05aa1065367e9631c8aa220d26c.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/anat/sub-nwu01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..77f385ba73 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu03/dwi/sub-nwu03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s924--1db93005c2a05360554c427d4cd343520904a573e6224f85e2002bb324aaa33a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef599cd6b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7320--f853efed957c335ae820a1ef1daa0e547a7921d52d0a6a797c7a3f87cf9ff55e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f76d236e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..610a9ec5b0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7163--250e319bc1d9d20a533353bc2674da4d4f7e559de01dd1bf5c8e54a0150f817a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c366c5294 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e7a48cd749 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75304--502c33495d7db3f106a93b5ba4be5056d686fe74212afc6141a7e1e94d2afee2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..731738220c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e67bcc48af --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14762--3cae7227b1b0e2a2f5232a4842696246da240a9ad66766e1e8e53dd2d29991a9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d441404268 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:34", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..432df8cc3f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/anat/sub-nwu04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37839--5a619f44c5b5788b5feb84fd29e9ade7db66d4a9b9e6a930af5e8bb6d052364b.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu01/dwi/sub-nwu01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..31095e2263 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu04/dwi/sub-nwu04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s978--ff415cfaef540cbefc8163bb6e1262bb44ef81dfaf90bd73f682e6475582d109.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c05cdf0d3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7316--a77a3e596aa796450dc9970b94d08cf85a5526b4c4218d181101ab69731ec98c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac6ea99633 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7215--3312dee6b60d2ddee0c1fd3d2a90452b26f333461bd01c339489e7e6775f7dd9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e42be99ed3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..644c05f7c3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75360--c0a16b6e262d0cadd5ad991fb78cacd274290bd15431388a9eff794ca9f9fde5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cf6386eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0d76504606 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14710--d2605eceb37923479736bbbda944e40176234e7e5983f9f094e9c729872a9c0a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..26afbfe3d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/anat/sub-nwu05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37958--bea2f22299a0095d54e56876bc727d58aa0d6eb737223a29b0ad8ac12975dd7c.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d20e5cc7e0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1004--1bc40f24d6562597ac4de670f872c6f4f4c3af4f3e6dfdee5d98c78aa770036f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46bbb1514c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7241--d4ac0493122fb5ddbccbff70157a71ca58a4f4eae0ff7ddf13df333f2b4f86b8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8dc36465cc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7132--98b22edfa479afdf763d4862ff1c9c3115ee660531ef199ec0a418a08558eaab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e42be99ed3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..980da6e386 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74972--2aa74fff2ba5857e1282071d490f4ca96f5725ee0162e6fb3a51ac7b335a3315.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cf6386eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b0875aef09 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14622--4cc9ae71a3796766cd9004b992f5c058ca8acb1a27d32904525ed33d19138df6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/anat/sub-nwu06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": 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derivatives/labels_softseg/sub-nwu05/anat/sub-nwu05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e422a15176 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-nwu06/dwi/sub-nwu06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s917--4b56054a78a905d194a56c2d5884ce4459918d18dc694b748a5802474a1b5076.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7fbe9170ce --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7264--ea1fca40ab7e338ec1170e03b0943c30d432061304e71bb96ce9404b5e67d868.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aa94d37cc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7122--556bbb66d0e463ea87fbdb1c291e663b905ffdf47937b804fd0253c455ba065c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e42be99ed3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..98a90a6a11 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75044--440ae684141f49c4a1d2937b1f2ba3cfa5513fcf2f7a45ecb7b95e66e4914731.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cf6386eab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..143f53cd7b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14705--e50bfd4c46c3d861ae76eaf004823a714d372541106b74f07b8d216ce0f83377.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..310aebbd90 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ab8e240331 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/anat/sub-oxfordFmrib02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37967--bddf604b7dcf36eb863d51cbd9b31e7ffc78509a214608e056a9b0fb3018a903.nii.gz diff --git a/derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-nwu05/dwi/sub-nwu05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7f2444dd70 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib02/dwi/sub-oxfordFmrib02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s930--dbb824f146f84db7403efc10876a92fb3a6ba2a75f138fc60529832021c6265e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..33751d1181 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7212--1a81e329be874fb45f2e5be584ed128a1e34f1a28994f653e0467efdf063e2f9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f2f12e1281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:35", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a0033955db --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7159--53cc3bdda82871f491996ab67b24de056f2f9616ee2a921414c963309696bd01.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d3f4731946 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e4cb159540 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75386--e1e51a8bf161fb44c381990e581ff178b69ac7c01b602b42e69877857b2cbffd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f3a75aff2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fba89540a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14665--e0c0b41208eba807044a841c8bc3fb0929d84a8cd885c24cf1e5339b0380147e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fd62b29b63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad69513945 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/anat/sub-oxfordFmrib03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37022--e8a6825a3a1e6f8f56e34251e822f4be92d124eaf3b6accda4a2dd57c3d386f9.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e90158e5c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib03/dwi/sub-oxfordFmrib03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1016--4644c4a94e65032c57ec5df70444741289215d3763de66538fbd891fb6b9eeab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7246dd1cd4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7294--46b5a9cad3d7033e19e80bcea90f28505594d0b96232dbf3ad533f58d22335c6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5be8088db --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7220--42b63bd569a0690d2b74ad1d3f7bd83be4cdc35a7cc3f332b69e345ee9564faf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d3f4731946 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7805f5ba0c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74990--56e547e41d3871cf6ea55dbe34541f9682fc5473e3d3539d1b3ed3e5671a8988.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2854c5ef0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/anat/sub-oxfordFmrib05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37335--7d192fa3c1c283f558d221db146f090d3f6092d3ad6c9eefd8245a0f8a1288ad.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f9342aad3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib05/dwi/sub-oxfordFmrib05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s974--794960dd20e3040c2b7480bf7feb62a4173d55b6bd6ae92e3fc237e8a4604491.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3cca270e69 --- /dev/null +++ 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..810f91b46d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14703--f6c587e20ab0374367ee793a9215b0b86e4ff6a4bbf8503e2c976a55c7c0e6f7.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/anat/sub-oxfordFmrib06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37207--7309bf7976971da158e73a22b4a0690909ed155e18e9f000068ed2f85f582852.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib06/dwi/sub-oxfordFmrib06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a3c118984 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7244--385eef645408b1cdbd48b142e5bde1c10a203b90e50165842dc9ff7cc04c7e46.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c868dbaa95 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e7d828982 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7211--5333e159a359e8402cd35bb1aa600be1cc777e387dcbd0975667a72018b77c84.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:36", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e3cd1d5adb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/anat/sub-oxfordFmrib07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38281--ef1762c8ce528439824e4409bf2775268de363ee51cd48b5e11b86594ba7fbbc.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib04/anat/sub-oxfordFmrib04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07b485e2a4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib07/dwi/sub-oxfordFmrib07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s957--086c0423419e260b664e3fea9933e8ad9135c3576164f3e952e01ff79b17a7ae.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7251--442f116ac891e7d5b7a5993caf5c68ca538c3eb606a2afb6642c1c475ebf2b6e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..94b82cc638 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7171--f57cc3f99aaec246cb5bc201f614772c2ceb1c4a27cae361210b45396a1c10cb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..64410d5987 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8c07727e61 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/anat/sub-oxfordFmrib08_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74793--fd3bff2ff763284ef002a23b77f2e9a44d516027cacea35d2bcf0f999b700b94.nii.gz diff --git 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derivatives/labels_softseg_bin/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a34a36e0ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib08/dwi/sub-oxfordFmrib08_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s955--1e39a882157d40cd0e05ad87b8482c7f07705ed9f8faecdd10f1da19ebce1980.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..48f50e9a94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14758--14d218e7cd7883794bb26e231e7e82806fdc2ffed38c7389d74c854d94461ea3.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37633--51aef440d3be9d359a774beedbc5cfba9934459f024cd461f204451faf666e21.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib09/dwi/sub-oxfordFmrib09_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..15da2465b1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7273--2748326e9dcfe947f6e632b6cf26ff983a017f039d46a09b80b0d14dd1ef889b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a8ce6bb07 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7243--ebee5057befdf2bdacdc1ef2a9ac496a33084d83224418ddab490da0c22e63f5.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74936--c8f326e44126c2100199adddd243e5c8dadb8f3e298ccc89063fd69798bd70a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0dd7217acd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07318e0ff3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14644--232bdca1e0accec9b12e168a196b26b0181c281a66c18637278b5fbdf556b86c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1bd35c6265 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8701539487 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/anat/sub-oxfordFmrib10_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36588--70e065581c91ba5424d2ec2af8ca496984f859689ed33c32befacddc56a46b0b.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8d15b05be9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib10/dwi/sub-oxfordFmrib10_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s968--b2850735b7cb621b94be665251b0c634035d6b9714a518419e2251c89bb0893b.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..da6eccf81d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7207--82982bdb45a52c8d60ae99b070ea31eec88d38d366181b45aa1ff5d0c945f6e8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..64410d5987 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ee542d7da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75099--440bbaae4f409a5ec533b1e8235e6c7bdbe257c2122f74f676a65ebfbd8d27f9.nii.gz diff --git 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+++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14673--f71079c71ca666ecde9a0e30eb377196e4dc231bf871e50b4ed38fad9111eb74.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1bd35c6265 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8a2b3de8d4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/anat/sub-oxfordFmrib11_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36842--7ef0efff1e232aaa9307313f43c0a8cea1f458ccbbb3a01f7383b38cf485d1c5.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordFmrib09/anat/sub-oxfordFmrib09_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c964dfca33 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordFmrib11/dwi/sub-oxfordFmrib11_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s927--20fae335a69f71564dbe28953343f1d9235620d9f2290b7c2790e3bdcb1568c0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6e4beb3946 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:37", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b4bdc505ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7198--50929c67d506ffef7b2934c3e830efaf13d619bb68c6dd17d321e4895308428e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac31460dbe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75240--dab65fe45ec99dea3212d7d43e55d2876115d3e7e43844887058c3c126cf4cc7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aff2b33d28 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14660--0b7d95cabb6f6ce9f2a408a0b04b33601eff0b9e4586cabc68a9ee0b31d33a9c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41fd6be189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f18bbed8c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/anat/sub-oxfordOhba01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36819--fa2561352f0a50703ded57068e43295abb9ad071417afe55cbbac5d42beee854.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1324c1066 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba01/dwi/sub-oxfordOhba01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s982--d88960a5a48027fc9f48e4e2b0178877298dc401ebb6434d7ce24d65c3f025ff.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..75c2ff6a5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--08de7dabe5aa90c70d3afe35662dc1745bdf9c4b28301cf23472d961179c385c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fe7f3945cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7284--13cbbf593e593f8ecf7598faf573ede9aca89fa7bd27c3117fb4f94a7a52d513.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..87dda6447d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74961--3ee574209a3fce84d1d28a41ad8bc15eeea7657d916d69b0a7f70646977c4178.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45cf67c5ef --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14793--033a27eec68dcd1487ddeb328e546782e96eaf3584376e814f6976af47e8d170.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41fd6be189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce5cb000c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/anat/sub-oxfordOhba03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37391--fcfd4a806425a05c24169df07a11a320e02864907e9e847987ac573f58e608f8.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a79a67e09d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba03/dwi/sub-oxfordOhba03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1026--4d1a00bb365ced2b73ca31473965812d4b2d87a574ec41b3807a3a1e0c4c389e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6d3c40bbae --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7211--3561a86a3f2e72712e7490fa4eb987506b1992170cad13a8b9cfcda7170dff6d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95a9bf0308 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7139--eca34c8dc9d3ded865a12e4867e994d6eaac3ca8de9cb9590bd6bd74c09e937f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2f715350b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75052--ebf738ae5c7535219fa0fe0e0523ec5eab87fc118b7e85d9c1e484ff1904440c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..098eb114ff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14471--54c2636849f54e0b8c05c510d761c717b92d87c76d21f5d5731d90fc16c8c49c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..41fd6be189 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25e491a0ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/anat/sub-oxfordOhba04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36467--67ac7ca6cbe6a550eab75992566efe31c9d83741f6c6a6000de1844af9cfee63.nii.gz diff --git a/derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-oxfordOhba02/anat/sub-oxfordOhba02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1634b645eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba04/dwi/sub-oxfordOhba04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s897--58126895351c0ce0175ac6ecfe0194231a2ccbaeb41c775122e5fd7b1948b529.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cf2540651a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7311--e31cb83c30622321b25da65c9e5c8a3deb4dcc44483dfff2f6e5ba4612ef333a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..71f631e875 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f492339288 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7298--16ebd8d330bd5452e44135a000219aefad69e6c36886f65d7e6414005f4fddc0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..056e138a22 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e41626209b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75203--07f2c91568ecd8425bf3a699087e362b21480f54991a76d4dbad72413517e71e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0d8e85563d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:38", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..360f0f2b2a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14702--8429dd2dbbbed9500be1321e447c25f6709738298d770df52f9fd4d959b7f114.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58a56431fb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/anat/sub-oxfordOhba05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38113--e7e0298e795373684cf855968e20064f6b37c912b121ca95bebbc62e8b674dcc.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3d2c6c57bd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-oxfordOhba05/dwi/sub-oxfordOhba05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1001--8b8cc59ec4a29290da14b373419bd472a9e687bb67f3289af5143dea2e086a9f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e08c6bbfb1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7226--89c7fe1041822427d892461912f543900a147bb1df84ba35e4f8ab41c2ae6336.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dcfc8349de --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7232--7ce90909f8e920c7f70ca9474c2ba7417cb57718075a08ab26e2ae88403055ad.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cc1acd1aaf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75650--86a90b3d2f035610600a8d26e0340925d530b66cb5789b2e504ec6b535d4ccc3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34b804993d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14666--4da7d25cbc4ee4c8f2aca97bde64e8969006c066bba931fb1410622e4bc9ff13.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia01/anat/sub-pavia01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..138fddb197 --- 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b/derivatives/labels_softseg_bin/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/anat/sub-pavia01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95f27d1ddf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s944--0e75b519d07fedee9053ddc29a8e128c91034fb384efc291511e06832c3b327c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5cdc8a91c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7287--25e4e2d1f0f07c122c725a691094f69df2c9d91d7f5a5a9d156edf8f164b2ca8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b54cfa85eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7213--cf90e57f98792a5bbfa85aa700fef5f717ad7db3cd7a5bd796e4c9027cc064e3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b72c81a00 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75373--ff5868585a78651c68d248d04f56fa255a8c206e9a490d48356324c1baa62c6f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..be9eca7110 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14611--5a97ec8e84c493f3e04cf628dffa6ebcbc103e2e5e01e34d94db647ad8eacd00.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4886abc1f8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/anat/sub-pavia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36932--d8b9aaed5d4f1c7e2582998701fa9dab278332f4237ac1468977481b4d6ddd7b.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia01/dwi/sub-pavia01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edb33b5ea6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia02/dwi/sub-pavia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s993--3d0e50bb06bdfc6af485826052f66f92b26074f5e7312e614753033f5a72ad9b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..181cb3f107 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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index 0000000000..dd771af3a5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7261--78f6d4d6af38bdd0127d263557236166e03c00ef2cef037cd8dad2a3ff2f8614.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cb1166fb84 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74787--8032378d0281547813a3be3aec1de288d47ff29c15909aa31940cfda935ae0d7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..12ab6ccbdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14737--f9ee252d309ca995783c5831678ccdf2250c6a5e2f7c23631e21cbcefc09552a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia03/anat/sub-pavia03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..138fddb197 --- 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b/derivatives/labels_softseg_bin/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0be9610b6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia03/dwi/sub-pavia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1010--88db2917a40d211689cc36f703ad2694dac9c1468f02ec9beab70bc76f585440.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3b4917b2aa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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index 0000000000..595cb231b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7122--c5adb48a2d0d8113e72ddfe334aaea01366f46d82a197ae0024d82b0297b45e5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9855393b6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74741--a56690570d1a1f245d08979ba1e8e1be03620a2ab31f3d5292c1c7f09e4d60fd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0f33145de1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ab7c916b9f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14548--0c1f81666dc8a9139ec9aecd7ff5e5bd43795c9adae2f9578bf4303edadd8958.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..138fddb197 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b05af05ac7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/anat/sub-pavia04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35686--3660af6d76067ec69a13b098c5ed4960e69a2b118b1db40bf99b8468507d15cb.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia02/anat/sub-pavia02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72124083e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia04/dwi/sub-pavia04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s907--e359d005c77ace02612f87afb253dc26b56f21bffda7045820c3e44579153437.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6a6ceaec99 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c366a5f3c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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index 0000000000..40fcb52cc7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7253--e87eddddb8db4d5f233c61d7be37957670e147bfccd9ed4f0a3114b4f9158a3a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c99cf22522 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:39", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git 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"2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..658e3ff8fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14851--ee49ffa901d013a4c772d9f30259cbcb452f55e5a616016079f736cbfd5b2a4c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia05/anat/sub-pavia05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9d19030d9a --- 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b/derivatives/labels_softseg_bin/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a8c8aac2a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia05/dwi/sub-pavia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1023--4802e2a55209d9daeaf50a32f6aa6b9c48166bb09d3968d114f8efba70bc78b5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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index 0000000000..cc2dd1e922 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7199--e9e649d9e8c615f5f687ae982f86f2601ea5bc263e034cc2efff7924ae35a703.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5a157a0df --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75731--508c52d41e6f8c6572b4668a530542faaf744e3f7aee5698a0806a1d9e0dece7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1033165863 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14747--46771157b312629173f1de681655e9d69d95cb8875d68d6766ca72e1c1780523.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-pavia06/anat/sub-pavia06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9d19030d9a --- 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b/derivatives/labels_softseg_bin/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9df859bd64 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-pavia06/dwi/sub-pavia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s980--10ee1fb0b239e9ab76605b7ed279a67f7433478d6d48b739f9960de76d42ce67.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e7f2854fca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7971--547006b391cb359524c16712b07f1d3adce41ba17318e2e04389079f735bf07d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e64b9ccb63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7835--4abc1f328bd1f2c4d3f6314ba485003c482abe576a3cb881c254c7186786165a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b8317c4bbb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89151--6ca72dd0e9915384d2c9660f2b532da0707b5b3f4f2f9b3ff4875f670ab208b5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f90c487fce --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14603--bf1da437b6469fcab5d454f3c51b812ec19053cd55945c09241cbac0ca52c6ca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9d19030d9a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..720c8e7e44 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/anat/sub-perform01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33070--63e5f66cd4f3294f23e301f55cec62cb12b507aeb6b05c891c816499358be7be.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-perform01/dwi/sub-perform01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-perform01/dwi/sub-perform01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform01/dwi/sub-perform01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform01/dwi/sub-perform01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..728109ea5f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform01/dwi/sub-perform01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1323--d1b6695462e485b03ce3bc70029450ca24ca316448cc15d99e5679d9fdf9fc8e.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7942--ba30226b020077eb9a3317e52c49efe2c160265562c7090f248c091ec3f8d698.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..56c08e7299 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7772--2a94a03fcfb984dc5dabf42bb77538d8567649493eb39a3ef65890e54364b3d1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..353b59af03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..92cf9292c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89189--a74390898728337ed0700110403a56531167a078f122efe909519d310cb68909.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b0ac9bdb02 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dd053d7d7a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14734--38b6cd9f746a71577cfc8f528f362d6a1b7e3f086d85a18f215d730ca7fc40f9.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-perform02/anat/sub-perform02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32752--82c8050ff64d8500f6d0cbab591eb6271b0e1915aaae50762a234d03d294b62e.nii.gz diff --git a/derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-perform02/dwi/sub-perform02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-pavia06/anat/sub-pavia06_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-perform02/dwi/sub-perform02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform02/dwi/sub-perform02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform02/dwi/sub-perform02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8628f7855b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform02/dwi/sub-perform02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1334--ac17fdca7f1d90d8da2154e9e4bf84790076bdc937d04dccf12161cee06257e9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..040fde22da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:40", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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"SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4115007beb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7793--107c5d7c5bea8844a156c6f903f1fe3884720f8c985f36ca85c81db6b9293b2a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2a52540949 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d903261070 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89472--9f58d7a9a8c320852c180cb60faebbdb0111eea8e3f30cc925bb1622a0708b6d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T2star_desc-softseg_label-SC_seg.json 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0000000000..9428ed98ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform03/anat/sub-perform03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33241--95b42dfc4d9e68054940edefa4bb575f62cae220d1784cd74db3821772b5aa44.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-perform03/dwi/sub-perform03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-perform03/dwi/sub-perform03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform03/dwi/sub-perform03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform03/dwi/sub-perform03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..db16305543 --- 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a/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..72efc08c89 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7940--b32e31249d649ebb884d7542bc36fa84d4a3626922935f2bbc5bf71d8dcba654.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..de10593360 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7937--303d62f6f7c8e20e469e3493b985067321e2d2ebeed540e3c370dd2f1cfec02c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform04/anat/sub-perform04_space-other_T1w_desc-softseg_label-SC_seg.json 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derivatives/labels_softseg_bin/sub-perform04/dwi/sub-perform04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform04/dwi/sub-perform04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform04/dwi/sub-perform04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..489050f60b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform04/dwi/sub-perform04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1394--d5547c914cb45148ab6c5799dab9291db80cee56c222789d09466e1b4236e817.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd3300c1f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7830--5e0c7dcf8bf922cb36c665887951884b3ca516bdaeb5c6aa44473ca42c265a32.nii.gz diff --git 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square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..62ffe1b625 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14577--31ab7b0c6665987ab8efc2cf9ded52a3b764754dc271363711cd9beba2e9824f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8b914eb7b9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/anat/sub-perform05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32717--130db059f3752523d3356a6934b12afafcbecd2b43b71b7a950ad54d06195d66.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-perform05/dwi/sub-perform05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform04/anat/sub-perform04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-perform05/dwi/sub-perform05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform05/dwi/sub-perform05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform05/dwi/sub-perform05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4906000f67 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform05/dwi/sub-perform05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1333--328872884f01ca5aa09c5efa69ef9dd5ff0d819cffb4886620b40cb0a4e27fdb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..272fab0f36 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7984--c91b0f3db424160304495fbd39f8e03d153a610bfd0b73107376f211a822fad1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..392502b220 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7765--fbdf5b4e7f7390dcd7493f89df703fcc7f6789c9d72bd22f819ca7b59f12871b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2a52540949 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aedeff4c67 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89069--11272e8ed7fb4494b3b03212db6633906ad892a9992ec5f2d4fabbf84a2c62ae.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f7b133852 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2e0814562c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14636--249f7a30add7b3143f8ed4d31b3a64029213b95e118653facc2c6e6fb1835939.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c43f9308fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e92c9faa08 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/anat/sub-perform06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32728--2211f4d7c0c49844444985faf4534ea553422941399508ae4a9e6b2b435ad7b6.nii.gz diff --git a/derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-perform06/dwi/sub-perform06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-perform04/anat/sub-perform04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-perform06/dwi/sub-perform06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-perform06/dwi/sub-perform06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-perform06/dwi/sub-perform06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..39e0948e09 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-perform06/dwi/sub-perform06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1343--bc8445e7277c6338c9fad7b569ff2999be70fe64173f0aed3ddbb504fd02f9d7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7d9b4434e9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7361--ca818d34b8cbcdc698813b89018d72d36ac58dad4842d00f9a4dcd2399f09558.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b533e4d3fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:41", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c168c8876a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7271--85fd47944caa8110e9c1b888b4f0e542e8283eb295fe6ecd62652116c25092c0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f4d5581821 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75549--19862dcc7261e25dfeb31b31bb7477441ce215fbf81f4ed7134fe8f4bd060a74.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ef3888c63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14894--ca5031c9fe48dfc66eac94b1518244bd769769b8c05fcad0eb3c3e98f76c946c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a7ac2a0a36 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/anat/sub-queensland01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38435--15f899b110f0c8ab8ffa1478c629b50136e04c167b11519dc4701b27fbad9cde.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1e0a843b3c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland01/dwi/sub-queensland01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1044--6be342428bc054e315b761f19b7a407dd5c5214eaf0cfbe43c5bb1338203e3bd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..893ec51d9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7277--795fa5fa9297d319eb591a6a5a4a1572d12165d57f09c0d176d9228eaf7807b3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..401c31e66c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7153--ce7923289eca9b179e4b3631c342aad09703c3628fad054de108fcc077ff2cc2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc2c07e0c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74977--add86aa5d181a8fe08f96fb7ea1d58381e45b3137a9caa1194aa8df958ea222d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b514b22e16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14565--e32675cfccdc01bf051fd095fced606581f6c9cc39257b619b67f34c8bc99fbe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5bc5fe746a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/anat/sub-queensland02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36391--79d30fcdfc8e8355406c439e48588acb7d1e52cf524eb34d3448293f51928b88.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2b13492f78 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland02/dwi/sub-queensland02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s907--76b22f46f34b2434132db0fc232e31c3fa790a91dd8a469ffffb86d86b6233a1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..65732d16a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7320--bfac5a634a6cf3708c4534c462c9f6d9c3da963e9c7494fe299a1dca65a4df54.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..749c15ef72 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7243--b1f62e61bead3ba4f841592b808f86395ce2e41d2dc21869653709770490d8d9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..031dc282e3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75247--d91623b76be5d3c38bc64154b2bb512bb17fc615e3c0bf8e8b31249b359ad046.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4487a71ff0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14875--76d1807d220f330c575f1ca8c8e9955a70bf934e13fa2814549aa6232dceaad8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c14a1785d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/anat/sub-queensland03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38478--63d02dfb54eee80bb7fb36535620da78593bd6f2deb0740e42046558b524ce6d.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..06b8890ebf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland03/dwi/sub-queensland03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s983--1ff571b31387e74ffb2e5f5561379ff90cfad06bfa76b7b0b945c20032bfcaf7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd73416068 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7248--5bd32f080188fc81f5ac1bda4daeba4343cebfc9b36790c04fd6a57a89954ad7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edf6e40b91 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7196--fff45044195cea3309d6b57f0f82c3012c62229f753244ce14a8bd89130367d2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..19d7af388d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b190dcd66 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74604--ca021bbd1633b46f7f2517c0da6adc8f4cd34c0b717d40f6335b5bdf325e4190.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bf50030012 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..37fbe821d9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14535--1f855d68c3dfa8dc5fd98b2faa240e934753ffda5468a20c8f1600f6a6839bbd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4bbb66a72b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..689dcca28b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/anat/sub-queensland04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36279--e4060e9ef54e01cbff5b7426446c48c431eeff3e21a68ad345b0c16df2ef5cea.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland02/anat/sub-queensland02_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f880c9ee30 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland04/dwi/sub-queensland04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s951--de8df6fd31370a51c037a11a953d07c1c3ec7d7882f326b346d1824c71eca2a5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..db93662c6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:42", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c48a44de8e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--3d45957fc69c4e6b9d2b9dcba3d492ea6f894698a2619db627db2ca9f10cfd23.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e6ab54685f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7192--20c7d62e71553f97533fcc337c385163aeee03b89da976e45ea45a163c29a557.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2d2ad0c8ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75120--0b124ac06de307202e9bbab4c954fd10cc8811aece6fec806b76a831197f3df0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..737c0ea30c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c6556ea28f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14720--e5b82c758fc59142974cddc0f5fa18328c155a3892fbcac7a0d4789815a29b0e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..95e8d4ea2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..930b2be7d5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/anat/sub-queensland05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37567--8eb5234617a9d856f129c05fb74975d0dd1135122f93de3555c9aaaf4480d162.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland05/anat/sub-queensland05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6cd010ac23 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1006--843b0b1899b7f44fe04387df420727950f7e3961b7c1d541c041eb9346aa556e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7b9568d6e8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7262--c74855539ef786e29b825e99408a36b6f8ef174ba627f1f3b88bbef569facac3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..80c87f0eca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7174--697b95a2daec00946edcc46e63b0ac7d55f8845627adacfb2e3799d27b06134a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cbfd9d2c26 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75238--e80c17641c22f2ef3ff4b289b7f7436cd67e70c5fe45281f4e415e005e8fef23.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..737c0ea30c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..45112f1617 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14669--e55e3841d7f14330d510d662f424d0c0ae1e39cb767daea8c742725779d80e3f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..95e8d4ea2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fa4f80574 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/anat/sub-queensland06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36928--b91e382ef99f2c736cae0859f4b2652157c1c1823b035a3d7a8146b9b8afbc22.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland05/dwi/sub-queensland05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e52e0c040 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-queensland06/dwi/sub-queensland06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s988--a5272e046d73052d45050241e418c2f011c8651c9057ced7012fa7e3e2a30d7b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95a4110bd4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7359--8dc57a05f6aa8906cfa85fd8e1ed47e471d8a9f10f6028d5f573bb4fe5a10ced.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfc161d758 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7352--b7a5d23cb586a8fb6fd23d823dea602aec5d9cd57ac8494b425c9c1f3a32fd2b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..92b9da7662 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ad04a5cb3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91525--2ac9a820d54fcb20a53e3486e3f09e396589a13912db5e28a187439918561b72.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..737c0ea30c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..faca452a3b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8171--9856f649beb2ed069f9aad51a1a5cee63da949afd060c3ddd541bde419641bdd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..95e8d4ea2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6dc291d902 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/anat/sub-sherbrooke01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36983--e16aef3edfb177cf632edf6605e7a57a9be23ddf70bc9dd348fccf7094ef00c1.nii.gz diff --git a/derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-queensland06/anat/sub-queensland06_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef0650b1fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke01/dwi/sub-sherbrooke01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s984--31e16fa2fc3ba29c9932eac3cd6869c684176029b55a445a155da99c298fd916.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..76f305fe51 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:43", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e2f0957a2c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d05aaafa69 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7334--9ce4fc4d3015ef10d5cf8d4eff4cdbf77ff9d5a4179766350c4ac3ee42cdf91a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2e5a74b5b0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91322--dbf8ff44cae25bb7b9885b6b3e456cc71052d7018bdc0f17458b583f9cf5d3a0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f5ea97f308 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8063--57d089d677fea2a77a8709158827bd46988339332480a1bd1f48e3dabd863b20.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..990dc806dc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..da32c5e547 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke02/anat/sub-sherbrooke02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36693--0357c3b21642295255da63ba77fa44640d111bb1c09fdbf710b986be59bc7a6c.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke02/dwi/sub-sherbrooke02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..053b344744 --- 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a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e75a84ff9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7303--a22ec025469acaa9d50eb2a001daef39d5b5747ab42389d72abc5a7ce54c1c28.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5676bdb0f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7287--5f88da2a4aa9546b446dc3151ab6b46c9582dd2587172650ef94a3d9ce0af58f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b202c0c928 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91143--2568239e7ea5a9983b240bc933c2b6f57fbed976af1fc3943a95cbb9121f7b06.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..75f086b3e3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8226--0a6f03b5cc89f3c2ba0f6e7e0bcd1040198f8e5fe21f7b692d76d059c1c994e0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..990dc806dc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a8331246d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/anat/sub-sherbrooke03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37335--a4e814f933efda41e53a71fb9a2a1113c2dcf18ee49717571e6a6152634ecd58.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..91c872485e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke03/dwi/sub-sherbrooke03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1016--6f879a9c098cc1a605bae42850adb7aad69c1c7d65220113b9be8a34dc2ef245.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..73e2a0838e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7266--29306738937c716c0b273f7f0ea215ed0ee0dd18ea5d6912c21a1e492dbd4629.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ccd9887c45 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7260--dfc295dd6a97d34d7706e3c285882fe5dfed25b9bed948bc081d31e1a595ef5a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1711e13f50 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90533--a2786c6505336675de8ff55bad4ba03b9fe9b0d6de5625bde994e8e350b1e820.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..891a9789de --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8028--28a6bab61cd0d9d585e1d19127e70ef9fd45c743235b0342c159f7e498571433.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-sherbrooke04/anat/sub-sherbrooke04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35591--1fa5236f382fd50f54a3e1106cefb2a2c331432105f3666b02e99b4d64aedd1e.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke04/dwi/sub-sherbrooke04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b00778163d --- 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a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d2f0750536 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7356--2c9207b0daea67ee6659cbe923c6531dae32de1f2f1f398b9e9b980f0ad80f6c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2f5cee5baf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7355--d1ddfe429e35042dc9e083717ffad48d379bd83103ad7b429d65fc2297867a06.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e4998e3024 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9542ac701f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91101--619705e756ab3b37705273e8158d47b122865d0046c9fc0bcc8cf35467ac7cfe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bc40e869a7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5a96eaa186 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8113--6fb8c5770fa569e6ace4c2924ade183c9125051f3433110989270f5ea31ece0d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..990dc806dc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4b60076c7d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/anat/sub-sherbrooke05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36457--095cba45733fba711209eede359880e4ec3bb525b77424f2ce8f097f19153842.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke03/anat/sub-sherbrooke03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..812d13d129 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke05/dwi/sub-sherbrooke05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s948--49869ece428e843c9c51e068060e77d03c0365f664ebc5a8d6408adc74147077.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9c8e7b98b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:44", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc5099668a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c0d1890325 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7349--e5725f04f3d23cb116e6f5849d4de434ba9826b9adb7fda2531af9857cc1ea72.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0a69cbe5d1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..da49daf28c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91201--8e327d46d530174b0ce7c20e85b2d375112578639f4cdb7459903319f99cb45e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25657d1bba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8123--9c153d2058d473179a8f496c11dc761d40d4b7ba63fe4986c02d79c614aaafe4.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-sherbrooke06/anat/sub-sherbrooke06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36311--8aed9cec8109aa81218b76ea1231073965868f45fd35da6c9d093d1ad3f91d79.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke06/dwi/sub-sherbrooke06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..38ed37892d --- 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a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ca691ba66 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7352--42d5354c86fb6df8e1a14a7da2d1a390846f957a7e1aead1701e3c0034b5e7dd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..694c8788ff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb08f84db9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7284--236a3ffe058b0186e983fe7cd6813ba4eae5eda2f9dcb4c924b5894265350596.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91391--ddf1763154717a464e8cf00a24b263b67a99b3911f909b2c3d11645c576ef6e5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..633c1392f3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7974--da231409661f71bc7c85e1350c9ff71963dab6afd5e2d4dd693dc515785cd4b3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edb0a26786 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/anat/sub-sherbrooke07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36452--cfac5e6c70607e8ec7f852fdb898dde5418683938f654d876fa125be82fc4d2b.nii.gz diff --git a/derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b8cf996bee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-sherbrooke07/dwi/sub-sherbrooke07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s992--57782682b19710855e0a5e2139c51c05c90c4ec38908d5e299decbbb57b8ec59.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford01/anat/sub-stanford01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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b/derivatives/labels_softseg_bin/sub-stanford01/anat/sub-stanford01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford01/anat/sub-stanford01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford01/anat/sub-stanford01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dad4d0f2c7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford01/anat/sub-stanford01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14850--01e776ccc31a82cb9cd1741133ac55ba2b90fdf4cb04c81e8a6a3e5f0727d2a0.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..60df4c2489 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford02/anat/sub-stanford02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5681--e2fc7c21b7a1c45f41c341fd04388b55208c7696a901163fed7de5d928b6927d.nii.gz diff --git 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derivatives/labels_softseg/sub-sherbrooke07/anat/sub-sherbrooke07_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df92bbcc9d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford02/dwi/sub-stanford02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1329--d25838a7f4c5634750da2086933007f610103fb5cfa8deb545f6ae886041331c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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"1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bff789750c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89303--483e16d8709cb1f541613cfac6f0b741565389ff6700fa978b528f46d27f40b7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..30220bfae8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..af1eb46870 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14646--3366dad76702c4d728a0fc7a28d868cf113a15842118fabe48e97ce9d5e71cd7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b68638c7a4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:45", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d4126e51ba --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/anat/sub-stanford03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33749--b8d850b5a4a5ad5cdc4b3049184d4d35b9a01a00cd13eed795e84c0920c1551b.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8be30b08ed --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford03/dwi/sub-stanford03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1254--456ec064f9e064330e31761948d3058c594813c4472eff05f061d950526a0cee.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..065252ee19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5746--56844e0102c42bcf74c53ba29764dacc0ba375a7cc70ff306403cd009bdb175c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8f9fc01dcc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5609--7dfcc35fb67430a1b227a5b72607ec8d20a3b8cdb5fa6a38c4efc2e7e54f8afc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b3af785224 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88932--bed16ae7bb0ea334ea94b9a913fdc4a089bceb30ff0f1a2b8fff99287dc1c2dd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03c237b3e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7378409ed8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14652--df947c6ef3d6d57fa520e5436aa478094f9deae0d1f2872f118a036d64f802f3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ce3643d8d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f8c827fcf5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/anat/sub-stanford04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s34176--f03aa71680b3ead4734b6da12b45cc06b09ed37ac09d620350e651cf69b7d603.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/anat/sub-stanford04_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9dfa42ab19 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1317--883f07f1b278b5dc62e373787c8b379a7a996de6e66ee96a1b49d168a638e18c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce0f63dfa6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5627--2ee79d7ade36463871f0d25595319814e46ea1e1a6cd275ab0c41e3b9eeef59c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6735dda2b8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5598--3aa7581e45f7647a6cee90490d68dc6b980486218fe1a747bc2fb44784fec34d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b253095553 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89546--42236ef09c049b160a56bd237568274a056a0f237f87ed65e858f88c29445214.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03c237b3e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2e2204bd46 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14681--ed93af4d6f02fd5666e1276cce762314084291a69c23c911adbe1505e90df17c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ce3643d8d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6616b3daef --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/anat/sub-stanford05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33118--1b8a87126755a6f4303ea0210ec9376093b706ec7e6a2ac5b7d19dd0cc80094e.nii.gz diff --git a/derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-stanford04/dwi/sub-stanford04_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a9ac6b6c64 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford05/dwi/sub-stanford05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1300--53ab586e332d5cf2b257ab7f20a09b0a44d6c2130031fdca1d885fb4424b5fdc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad9c71c476 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5634--89e2d2f3171072cda1864396e37e40e6e54d668212d6e398e34b82ae2d895bd3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25ffad909f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5594--cc325d8645bf5b1ca88cfec20a7471a0e04153e482b1702f49dd2573648ce991.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..734916a738 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89090--2278f4650ef7a9b6de2844daf81330d2ae9a12472146c9e8eb4015d61417119e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..03c237b3e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ac369a424 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14613--7f2e1f59c565629604681f817a5f6ae863b2a7b49778a6d5fc25914974ef232a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ce3643d8d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/anat/sub-stanford06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": 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derivatives/labels_softseg/sub-stanford05/anat/sub-stanford05_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d5533a7386 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-stanford06/dwi/sub-stanford06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1276--f5700a43249b06c5311de09385c40ba9269c614da1428c416a53367492d1f459.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..27281765ad --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2acc88a036 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d0005e8498 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7178--af54b3fba6d99280a83381d7f556ebbc29ff59fe33faeb20bee0316b181de169.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7ccf096079 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:46", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2c2bcb79e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75127--92f81b9a0c20ffb29fbd6e72069a5e093b12a3e8014c13c81dfb9ad89ffcbd08.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4db4a8d0d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14729--8e9f25de51d347d95b322d32e12575087208499ab1e3b6141b65bf3ecd281fb5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..444ab0778e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg01/anat/sub-strasbourg01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37610--ce80d921f937592b1b0cec5d70c46a7df2c18afdd6e6fafac517b863f96fdad5.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg01/dwi/sub-strasbourg01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e52fcae55 --- 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a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc22aafd06 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7371--0b93b3b8ecd6822ad9e224251cdf99185d40430b71671848715bac9e626efb48.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc13a2de0a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7170--ed72941475b031bde5efac05d3c89873ca3b94ece46912687c123bfab00aff69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce817ecb73 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74863--f195a4b2d0c70bd3ecdab3a749ce752b185c1fbc5e0a474cd9579bfd81986a8a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..343247b339 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14792--2b6b05572c926d5030bb2c7176b345375621f2b8f93d2ce409dafc9feec062b5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..af9cb2d81f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/anat/sub-strasbourg02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37394--f9fc2884f209a569805793f28f5e3a701cc98d5ee722f67a74e64f29c4bd4016.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1d82b9c2b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1384--57d311726a2d39a19d2c5826d86a57ae63ce01969e1e82fe4a40669ccd9d3738.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ffe099cf89 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7299--38c703919579b972e467890767f0334d5834d59adb0b1586618a7a28e7a15da9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff6acffcab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7222--1831f7f4bd8cd4b64fc2db3b2d00e3e0bbc038f16d3f3e1d26a3f16f851da23a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c40de7afa6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75655--82505d54c5f71a8326e064cef1ec7ae6a60159e91366e4b4a6919ea41a225b8b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a5cf5b94c5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14767--35b145a2cea4c2756012dada1b865707c17fed2e487e1b19c17d7c3a69c4e934.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9e1e03c822 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/anat/sub-strasbourg03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37614--5281326c4008f9ba9d3082e0f39d558950a384ce3d00598eddbf24f03b21b93a.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/anat/sub-strasbourg02_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..64442f2316 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg03/dwi/sub-strasbourg03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1370--f5b00f66a837a647ebd08faeb3d9183c1c78b43966b387d962be52a219ac8e1b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e28defcf2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7238--78121b0298e8321d5e55ca916f9d2aed1c6f1b583a7c97c0503277ed7af1d444.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f1b392d485 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7141--cfcfd24a386232bae3822cce488a187d15470de5b0d5014d756cc2c231488000.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f412cd32b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74820--ddfe42c14a5a8bcb6a369f3d4504fe79e65c928c022ea2e71edb8d155984dd3e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d444e0cb3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14577--9d70d048652b61fb38d9503c09b6cfad10ed482fa0ecd6584570635896bfcd5f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c251d1b51b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6b7342254c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/anat/sub-strasbourg04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36610--aa19f181eb49cd8c5284ddebcd5d12685afc28aa541b6a748998db7b6ac01e9f.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg02/dwi/sub-strasbourg02_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ed29fcea8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg04/dwi/sub-strasbourg04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1326--be1729d5d49cbab75a5bfaf318955b6be9eade4b2b0bbca489d6d75057546f09.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3450703d8c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1ff80f33dd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5a296b484e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7177--bcf82eaffe3e673f54f19eea267ae2d13846b8abe03161ec55e93eaad01a9f33.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e9d8d517a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74909--225f5395779b74df1111475e3cd5e619c9bd0fe00f67ed23fad5e5178a040dab.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..fcdbde584a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e90ef0c9c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14585--2676621fbd325f551ace744b73faf7e346c35336e6e9406ec37c11239eb05167.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-strasbourg05/anat/sub-strasbourg05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37121--e03fcaa22204a4c4a66681b60db7ab44089dec07fc92aef254aea8b20bdf5577.nii.gz diff --git a/derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-strasbourg03/anat/sub-strasbourg03_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg05/dwi/sub-strasbourg05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b1b784c10 --- 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b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd51810cab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7194--688934c527dc59ecc9adb1a1e9c855fbdc5c85083caa6ebdace7c8c6207c75bf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4f77d7feec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:47", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9ab10a919a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75321--7e9c1c24b5a683feaff91f0d2bfd4fa190251d4c73f0f20373cabac24a03ec7d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d86f8dc6e6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14762--c7fd37a3ff04404724877bab333016c05b988c4e91048ecc45d70c19e3a2604d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ec0de075ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/anat/sub-strasbourg06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36525--41528343c231a5dc5139214eb47830d5f336c8a3dded00cbfa7d72edbb58d72b.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..62787e3f0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-strasbourg06/dwi/sub-strasbourg06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1302--c3870c43f1f2be836b7fd5f9460611f6b7eb720442c9561434ee12d6e4c0aaba.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..63fce38b0f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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new file mode 100644 index 0000000000..ad35d5363d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7165--0d3ff27754c4f7f86a8ba88ce5f75150d7a6f5f3a13d14bf0945a5c76632e33b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3b4b72e0fb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75099--c5b55199fcfce07355f63d0901bf4d37364861749a0548e83b9afb52b0ce705b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8d9d298753 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..70161af7f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14698--78f0fd9956f6ead6c17a2eebefc8e3bed9a25f4e015fb8d8bcb84b5df2362f69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..55f98278cf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e42666b8ab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/anat/sub-tehranS01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36639--1722ab32b7200128671efe84db0f6d2fe43ac622f52eb4083feef7c12b09132a.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0d0233c160 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS01/dwi/sub-tehranS01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s846--f033e044060f5c6eb83f4ae9781ab522994f7683f3d2b794be98115454e5d1ed.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a899f6b30 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..16bd54dd0c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7255--34ca6e388f26cad9313ec5faf0059ed36e8695b94737664ba14ab8d829977293.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8ec2a4bb8d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75080--db12d5225b9291c97250be83404ab0968faa60add90a1b99e2f1b2677f9a5b73.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 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b/derivatives/labels_softseg_bin/sub-tehranS02/anat/sub-tehranS02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36568--fd5c175089ef750b6629672015dd359cb4a79005bf16d5a7c419004c28cd62a3.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..755c0a4fe1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS02/dwi/sub-tehranS02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1056--83469b74e11298850847b17bed6f1725c363ea0c89a63c00ae90040c913104cf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f8cad2dbbc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7270--8e714e30c3efac6dcf9e1dc3a247aafbf6736623c42dba9c770c518d196f2a41.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..29655f9129 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7223--ef4f8fd6f67fa788ef84242120046407c801fbd1ec07e1de32b779930b742e50.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..958f8cdb87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4f65f579d7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75093--d7039a205476e81c064876174d79e996d09c1c6275aa094879e53e2324d24cb2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T2star_desc-softseg_label-SC_seg.json 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0000000000..e3e44e3ecd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS03/anat/sub-tehranS03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36671--645556bca364fe8396389b408355361a76b77cc71fc61c4d80fcde7bca56fc6d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS01/anat/sub-tehranS01_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS03/dwi/sub-tehranS03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5db8c46298 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7271--a99b4cd23cd9974a0e183b942772b1e2e6f7e8034c244c0bda32c4963e44cddb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..033c72efc0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:48", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d1bb3ba346 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7174--a1fecbcd35ebacfd2aae3acb3f907b369aad001c556f0f8bb97a2bf82d3e6f81.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_space-other_T1w_desc-softseg_label-SC_seg.json 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"RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..08eca32281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS04/anat/sub-tehranS04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36213--fa98df42a69dd8318fec4f462997c49a632fe7ce640cd2c7533d631d0a4c99e0.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS04/dwi/sub-tehranS04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/anat/sub-tehranS05_flip-2_mt-off_MTS_softseg.json rename to 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square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a937a2600e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14581--8fff20d3456098914dbbbe1dbc9d3e011b7a2be8b37d8bfe9ff0d4f2fc5f54c1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..318f1e4228 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS05/anat/sub-tehranS05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36553--c0867e18794b139010c015a8139bf4963a8bea4ebf66c334c021444963b9cd6f.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07c8343723 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS05/dwi/sub-tehranS05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s926--7260117e9e3d5431b3b8abcebcf0b8b6fc4eb42bbe21b400ddd452a8f86f585d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..22d3fe189d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7297--bb614ebc08fa646049b84705af43ef7c0e1a503b736a7b1d9114d2e6a8d3395d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd08ded6c4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7154--792165373010bb80bf00b6a3c6302abe38f07ee0f72e8fbf488d588868017bf2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 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0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..14bd357f85 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14579--103461ee918cc86fcf759b849d2a85126529619b94953bf4fad5544be6c13902.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..da5d4b9cd5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/anat/sub-tehranS06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37925--07b152dc6c13505bd33d2ca051cc1411605fbe945ddbebf9f456bf9640fb7fd2.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0839ed43ff --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tehranS06/dwi/sub-tehranS06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s992--2458b178b54b54d0118891561af4fe59ba330b3542c2a432b7c2964c800b9a73.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..71c4b41f1f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8044--a0c40a304340af1b3a5ab1a6800689eeb94083c8b7c3d6786999b935979040b6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46af698c55 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7877--c2378bd8d9c3bf7c05e452b7f9167ca0b104905ed0c5b7ae73a1636bc138486d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd92a3ee6e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89448--d624b0bdb98ecd06ef429ba5fe4a5f5dcd15c512bfd3c6761ffd514a103211c0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2d9467d171 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23575--3112c7caf5f42249f2562b3a3448bbe7e967e75c6db87300b8b6f8729a17dad3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aa287d559c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/anat/sub-tokyo750w01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33847--2cb512482c8527c3f8a2d3627ec1e620365981950ead4c33e6096ddad6295baf.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f88f5a07f9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w01/dwi/sub-tokyo750w01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1317--dc1de4df753157d69349ad74df416e43e30d2616b33dd60706323ad3e94e873f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c538a10c47 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5607--c1525c561740061205dea9ae0e40a7c422201ab36790874df26565d912113d77.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f7ba143b31 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df8bf1abcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5587--9965960183762c590e0099db6b90a32300ac571cc8c19b7a6831337f01d16a11.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cac173070 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c78c2595d3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88945--87a41b3fdeb94a3afaefc9d41cf745d7405a492d8f6098dabd7c86ffa5038fbd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9f0eafa81c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..487eed437c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23279--85b2e5bfcdae90e048524b205297fe045e920b26af526f9295b72b22f94b0f7c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..285d95dae4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:49", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfe6b0bc23 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/anat/sub-tokyo750w02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33170--5137f2747fb59aa45cacc176bf41c3f7ecd11b31d0c1034501796edb0f40367d.nii.gz diff --git a/derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tehranS06/anat/sub-tehranS06_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e6f7e2ae4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w02/dwi/sub-tokyo750w02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1367--87058cbc3b9d41b0fa4d9cb829d968af91311962ce5cd1941d785152feb40b7e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ecc1dd2db4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5622--84b5df89f8518bcfd0858db4a565e929a126ab773bdfd50092f5bf08f288573c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5054cf4f30 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5708--695f62ec3149f6dc4233adffe6693c9fc3d7fb60a27f98996c1d115fd191cdf8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0c8993b218 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89394--39f0938d484f83094a8f5d512179c511fbb7c36987daa851688176bd367d42c2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..124888a289 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23278--c68ba89a682158abc90c3cc545dd394b919610665a079318ad59904ba477d39b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ed07b90fc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/anat/sub-tokyo750w03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s33406--9902c0a05b796e00d23a4dcfe368e4aafdca52940c960e40230c35648368e5eb.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5545ea10b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1357--ce81f9faa9c6c3402125e589a1ec34580d545164c5e545b135056d2a6c3273ce.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b140493b6c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8d653f622e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5439--c4096dfa636b730b629c85405997a782602e644363792e2893fd32494822821b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..14a1989c7c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88777--f93dbfebc4c90b3fb96578b36fe80bbb11cadb45a1fd4494e8e13d0071c51698.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..819b32c9cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23211--5e623de2b00894595c40697ee9924715b7d3543458563c4803baf974a2363f6d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..17255901ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/anat/sub-tokyo750w04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32639--bf129a1a18b7e2b746682a66988671b5b7d98ffa6d474477c979e07cec7d74ff.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/anat/sub-tokyo750w03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..52ff05dd97 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w04/dwi/sub-tokyo750w04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1334--3302fbe0a640dd3093ece04fbbdf0da694158d08216fe5830a06afc5fff3a7e2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b13eabe471 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5625--f0b63efda49a8bf15791a456aad268722e293b64871d9427fd76eeaa440d745e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0d45273118 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5573--ef284adc655df2707f49e2f0afa0a81b0b4f9473df439da54c2e5549be9f192e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..06a73e07dd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88838--f514d324cf21077159329b9b4ca57b9827a094df0b7a9c0c3a2d95c0548cf35c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b6440e7f1e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23163--c0674f24c05e01f2cde103bad8fea3c0c8ea256946434d0d074084143410e116.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..31acc2e0c9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/anat/sub-tokyo750w05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32428--be0e22ada80a0ddc4dd0f08906c4823c6a00a78486aef6673ca2d2ab2859688a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w03/dwi/sub-tokyo750w03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8379727b88 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w05/dwi/sub-tokyo750w05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1331--5cbcab9947f76b39cfa67a75c31d341d969494808666b357d9e1752061beb6e5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..52070f48c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5711--506f3be58ee78e159b9c1b0c8f645099bf1126b0e1f00780917934338388b04a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0efb6e8a6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ec655323f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5627--b97dcbb29a545f75adafd1aabfba394f3f749c4217b5b883c6662fb4fbb214cb.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..54129a95b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2a74e4795a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s88854--78368511a8d06669fa77909f632cd5da3101bdf1b4618722fb858cc173adfdae.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..602d9bb4a2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4ae2e3e597 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23287--66b5e1e7facab0792f623aae313fc29999ccd3dfcd36eecb34fa0e57bfcc9f1f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..e78a264c2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:50", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7c43cb5a7a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/anat/sub-tokyo750w06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32847--f9044d95110944aec6a489340c7110cfeed56c29e40cb70d6b769ff3ae29cf67.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b39b6d847c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w06/dwi/sub-tokyo750w06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1313--cd6d88660518a95adb2e984c1b6abcae42e2bfc05c66811d7787e4ca4d1d4f4b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aff55c3b83 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5728--052ffe6b1dc75da846111a66b9859c937e9ec2fef3718a6136a8a4529180cf18.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..25df275b9c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s5537--fc889c0ac89d780a62218561cf6ca240332d0aab06ee28e6a053d2730be18bd3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d851573b45 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s89165--6aa91a174d5cf5b70e688a77d131fd2ae3f40d7af2c53ccdb8e2a03752f59a3b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58e5731310 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s23313--741852704960464f96ee4a940951bca0ec0a50994ef3b68e74f0d1f45a3189d3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..96eb680d18 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/anat/sub-tokyo750w07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s32994--c292b5dd8af1bd2d05f88b1833b8456441e4c749a59c883f3d56f851c3ab5e7d.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/anat/sub-tokyo750w07_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0e92f7a665 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1317--9462bc6ca66a215715d828e11c4fdb1a29301f93bbb43eb1922d4e346f1ea579.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07c5861d3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7428--f9c6da4bb01efc674f3473d306a35e4098f7fdd9cce2dcf027db5e02265e0471.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..43746d5682 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7391--775c38609765481856a4fb9c4944123bb50999dfa385e1f474fdeedabb33136f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bd7c140ddd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91422--17fb31cd22ce5b031f71fe1d0e34e68c65a5a3373144f096ffa9683640312d46.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d636a1474c --- 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a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8af4f105a1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37248--fe265b9d010f89eb79800c6f8f2b7f8375472761cb3e548def8359caa90b9d52.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyo750w07/dwi/sub-tokyo750w07_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..34bdffee7a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia01/dwi/sub-tokyoIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1012--e0512c598e96751e0eb7e2f0449211b266326d5ffaa9f7532fd3099e0c0d746d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..56f9b361ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7328--644e3f83187203f455d8d37b8a8338d7df177c6eac2a8ee54034b4106d8f4277.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b6b1e9f2f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7351--91ab3f1786e7696dc15c99ba785655a8aa45c0ce3b2782b263ed44c385d161ce.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..072dcd1f72 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91025--3312509d26099dade6abfdcc2d3eff07c78e82a0859ef34f06c20c7d196369a6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cea8678d64 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8049--c31f3697d1bc8fad25b25dd3f42abedbec5be349f4c76c6f7dde4a6c94a9ee29.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6460bdaaec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..113375bb4d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/anat/sub-tokyoIngenia02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36407--55ec7fba70682807a7ae4f97aa03f1420032c95ea89dccb2a32f79fa419d4ca4.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia01/anat/sub-tokyoIngenia01_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff35a77d10 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia02/dwi/sub-tokyoIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s957--c8225d73a890dc036495d626d3aa0736c7ca031eab934095bd24c5d125e5b6f6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5110f4d764 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7333--8c19c84186910ca2ebea8f0f9d06eae283bbf281bfab7ee2edaeef22aef2a1b9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3b55b7d18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a31ba988b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7311--74949bd6eae73837ea436ee09e7fbae19fc51e97ccbb86a3f77c50911e5ef625.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6bdc0d9940 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7813c7f464 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91203--772067e36c3dba62c5b1ed36d1bab219f8d2fcc662a98916b84c210c3b3d6792.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d636a1474c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:51", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d61bf6adf6 --- 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a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3dd9b58b03 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/anat/sub-tokyoIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36368--1f1a440b315bfaa696364de08e88383854a14f08370a9089c623c292a6ffbf97.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..262514c121 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia03/dwi/sub-tokyoIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s949--bb952651fba53388efc50b4be180cdd035a4d3f660fcb544b332f59867a4015c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 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b/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3194c47ebc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia04/anat/sub-tokyoIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7937--7ade40a33e5463b317a9f24b5b1db5e783b937aaeb578cbb748f74eecf0fedfa.nii.gz diff --git 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+ "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8bb75e5400 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7354--7e15953eb2fa9e1abaf2885be1c5f29559f608013db6914aac3841e3c728266c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..236c534c4d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91035--d08fb8570415f24fdf131694d219ff78a80a40943d1b20d9d11f5bc7e36f6fcd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5302a25a57 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8001--26bb8fac5a91ba91516008e46cbb88891ddac8c36dde0822cb5a8319790ef7d1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8b7354713a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c6578eac0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/anat/sub-tokyoIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35890--6967ea80cca316c6a196f89335b66d3cfb0bb950922365f959d2d842d1989fae.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c2e3a2a2c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia06/dwi/sub-tokyoIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s991--cc031c3e0ef1ec52450c2ef7bcc9dfaf09d325a3c94e2eebfe0461953470b5ac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..48c7932d25 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7359--befb497f672fc555c816477137ce377ed46d5d1e723dbac0c1c30ac213d70b21.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..71c6607759 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7294--14ab4cac8013b3130d0d17d6de20929caf56535fde2ff3bf7961f8e8bf083791.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..67f6f58f3b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..474f7a3bc5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91106--ed65e1b1c3f4fce8eead61e40b049f14c075d0183e9a2511fc2494762e551e13.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b745d8b1eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..04f5e8a1b4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7999--63fd9557a37123d7ccf5a3b83080b6247a0dff13d044c6af9e11a3d822b2a0ba.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8b7354713a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9335b62101 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/anat/sub-tokyoIngenia07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35865--4e8b64ec6ff2ca20835dd7a5dd1047eb806729a77e4251092456cd8dd99b3c68.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoIngenia05/anat/sub-tokyoIngenia05_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..931554d402 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoIngenia07/dwi/sub-tokyoIngenia07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s932--5faafe05be0ce7351f6184b7ed7f3ce79f24c3b0b3cbf141923a1c2d940136f6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f2dad2d6b4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7367--f01b2485adc2394906da809d538ec873352d406d46b061e24017f944d85284de.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..48489dce3d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:52", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..37045b7323 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7257--757b2ea4f7b053023f9e6353c154387a22f945f4910f984f2c620259ab9b9bca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a498dc1a8f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75301--ab5c48da632ce2aa98a787677427ca571acbe6e8b76b7941436e83f490959682.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e6ed0bc4bf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14830--774413c782d42cf0faf633fdc8e6fbc15995ad750c367dfd117e40c58ebf14e6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ce7c0129f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/anat/sub-tokyoSkyra01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38285--38d89da0ceaf4186e1b0a6ebb3c5daa1c59329489789a40a5c57ee6da1beb3e7.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5fb6c9720a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra01/dwi/sub-tokyoSkyra01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s997--fcaea49b55372a46c27cf5f38c7f9a80ed6327a1bc88c3a0e8e6b8c29182a903.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7bb6eeb7dc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7279--daa20278321a915bf64918ea50f06669d6db696213ce02cace9ee876a1bdf86e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9609169f6d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7137--363666f222995723e5c34493a99891ed2f0a2b9c3797defdb79143efcac597c6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..015e2aae2d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74864--415f0d6d86bffb9f38aac780380df277cb4368e9347dbf363139f2712f578945.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..80f848c5d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14653--57accbc5407816261f9ff86a9943d4a107db1786f852637229f659851064fd84.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..66d26547f9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37264--0e9825501beab0aa6427c63b61a59ae6796f923e5002c7945b08a08576ebd185.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7050ff5b0d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra02/dwi/sub-tokyoSkyra02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s931--dc62055478d75f6b383af4db72330cff020de4e1b3066d862f4ed78fb3244c64.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3f90f41276 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7273--f2567e8d6d49d910d521de5821c677a3c750e6dbfc61e9f73e0d111adb837e6b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a01b03bb4e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7132--3f0016b843a2900db4f3c234e522584ec6dc682c127367095a0ee6afb6a4065b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3c0eb300da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75061--7f18d711a2fb14bdbe29c14d8600213a3b2d7320ff2bc0ba76a637f8baf4a890.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ef0ad16c11 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14625--0c135d5692f924cbcfb9e7c9f63797705866ca46b03f4809a9e21ea31955f830.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a8d18ddd60 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/anat/sub-tokyoSkyra03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37169--a8b3f41faab3f2a2c371e83819c19a888cdcb1273e3fc378874a982c20a66c4a.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra02/anat/sub-tokyoSkyra02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..863d9d41ec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra03/dwi/sub-tokyoSkyra03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s947--a35aa5170ae787358baca09d2220091ecf77005457a9b9effaef66be0de74c9f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..28ae3c911f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7240--9b91bc98ce9675bca94111051a3046f68a4309fec2ffe01624411fafde0f4eca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..79ea89d4f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..031f1139ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7105--44e83bbb5c168b76b18b45497efdb8abca7c14c8e3250b4fe8c28c29bf514e1d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1d4a3b31e9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..90d86d69c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74838--1ed275143ef23cb122b0e887f12425057cc54c1e2e187a125b8654f50bd4691c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6e9b6929a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..27d8ab5848 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14498--425023c21fc003984335d0381b258be1e0bb5852fd9eaa6436b1158213079a1f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..076518ac94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:53", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a2e5e1fd39 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/anat/sub-tokyoSkyra04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36530--ba7e3083772d3a170dbc57fc1aec145ac9282925e769c0fe7bd025c4075f2b56.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58f1040810 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra04/dwi/sub-tokyoSkyra04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s938--fac553368cd2e6758f8adda4bcfbe41f9b597ef5242a63798b53056930555c2f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3755663963 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7222--12a9a955382ef132f2ef2c3ea1b4c4dd4a878f61faf901fb449747d97e59e574.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..859d6d336e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7154--aa1ef128e1e0c9c3348e861ef5d03bd8dacbd6da1cb0705d115f5138eddd7b8c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e347228c93 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74699--9faa4fdf954419e52c1fd88b82147395136e7eef45444ff88bcda991809d5785.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7ec6df5f88 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14509--98cbd671eb3b0cd414c5a6656a143f9fb053b4accf0105ecead8e82e029e9862.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d2fa08a18b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36095--cd2d9ccb109bceee11f5648fdfec96ddf061ce776f938cca8c098b8bcff86906.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/anat/sub-tokyoSkyra05_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e8b6cf8634 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s932--1df5f1f728018d7987ba5d5311cd8fa91547d78f5157dd395a09bb7eb1b0e14b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ae3c617975 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7250--bb86cac0ead1b5714feb9e74b3d1915257433383cd6185339b9a683f474d96df.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8e6f18903f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7102--eb9b04b94e09265d4f24506cf845303fed7882b2f02cfefec26b819f38dfa3a1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..39695a5799 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74887--5c0cd088793e027925acf2dd0848beecdcf1eefa238b65a768e967555a4744d7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..030cf14359 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14648--4ab43424c7a46732ccd2ff2714e445ef151f85460ef7ff4e9f366360a688cf69.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9507b94fcb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36903--cdd5f32e9cc771c9ceed04167f37a30b30c27d3a1ad4ed4e0d9ca9d108ca9a21.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra05/dwi/sub-tokyoSkyra05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fe917b52e0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra06/dwi/sub-tokyoSkyra06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s972--f963cbe833cb762b0ec2948befc5aa8fd550259e87a072af154edec0945d28a6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..78551d6ee2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7288--f12fbb7bcec4e600212682d5a20c7d38b955142aa9cded858bc0c05d0ede6286.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..75459b4725 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7242--b334ccbf351337bcb4603afcb832ad04e1952a1de475a415542fc0319c2f8b2c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eb215a6f4f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74913--36ca4eda07f5c61b4fecd1a7f43c74b914d03a94ef41e69a5a714e8d3c4f41e4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c60b53bee3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d6ebe90c3f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14699--73d966c2b20bf5c7f45e2ebfb2b5db536666fec2e6e12b787585ac9279bb171e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..bbf62dadcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6799fad208 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/anat/sub-tokyoSkyra07_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36882--882b0730d1c231f0ad79ccb95342a5905e68669e9a712428b817af2be4ab22b8.nii.gz diff --git a/derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-tokyoSkyra06/anat/sub-tokyoSkyra06_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a9fe1f3c0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-tokyoSkyra07/dwi/sub-tokyoSkyra07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s979--4b48c4376eaad1478d20ba23f721299c4cb6b2b05caa21f2cde5bb5da64ea99b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6ab141cfa7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7347--cad2ac7d9163c5363db72ab74b7644c057ddef402b009e83c3fb4bc524d7cc75.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3728ff0dfa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1ce24c92fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7203--193ce39fd74879a8be5229be22b62528f377aebc8ace2100d9039d9d6ad8475e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..dbfa6648e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:54", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a671d284e5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91836--1d5db9517850144448b96a6eb7ae138b6f5b74698c6d6f949c97ce58ff837702.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..eddcb46a00 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14657--b892249a901de1431bfda52023c830e2fcb1b66f3ea2f59d5f1e9ac19e2f1b8b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..510b474c00 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/anat/sub-ubc02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36625--8bdfffaad6463a0120dc7b93fd68e549bcbcb82798eb5923b96bf3b09d44751e.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5cfcd5d72b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc02/dwi/sub-ubc02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1032--45508509a167cf7d41330dce343e8724d0143cab045b3c8c31e19a72a308c342.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..61890beee1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7302--80bb8724eeb28c9fd16968f7bee9262fd517c9d9f42a6244f3f1853a1473ee89.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..852621ef94 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7367--938d89be53a7cea90d5238bdd371c8373f193c78fe6ff1e0cebff3d07757948d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1b52d35ed1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91569--cd95279d1bc49ba211edb45bb42d58d46f1817e0fcc5881f79e74f3ce6ebe9fe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b65243062d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14600--d639ad977f366499332d8e15b5327507904580f69ac388da044071464d66cccf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fae65b2a5b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/anat/sub-ubc03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36415--d9260c8f213608f2ca0b3f603105b0eb245e9fa7670cc33f9846ea8b850361ce.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9019793fc8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc03/dwi/sub-ubc03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s978--e8a75c42cd1cb761eceacfb1068a542bd31fdb3d8acd8c50ec42eebb85772d28.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1c39916f04 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7337--26cb3a209e54c720790e761dab9d811aec0c89a4d13a8478d5b009374411c9d1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e591672e26 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7348--bad8f967b69f87ec55499d03555f9b1958032d8029c6496a760b03e8ace14958.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3d5fe4e059 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91423--78fe24d5ce88e905cb1474c6c942c3a6d87610e202e63e890ba06f6221489576.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..072e3c23b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14609--2ed425edc8072fec19b02820da1a3d09d83eb221c4cf97701dcf9ebc6683d403.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..22c856dc06 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/anat/sub-ubc04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35993--378fc7511065f53367221e7da9bdad985ae51f9743a64da9d9ce17e8e47e2784.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5537d9d295 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc04/dwi/sub-ubc04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s952--e12da246d5f9aea654a61abff508346463e1ed31a9cdc3e204aec4d15780ddfe.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5e7894f0d2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7393--5502211c127ee24fdd68396a97e1a42dd27b3925c0dffcb31cb0eb76be1110fc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..43b94381aa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7296--676aed72085dba1b44aa7a6731eb540e6547e6a1a4411408afeda3be43aa74d0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ccb246b725 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d52975a869 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91500--655da82fdbaf5666e603fd4e7455947558cff2fd6410443585dcdde4a4348553.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6621d417c6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..496dd6b4d0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14680--d2e2a527ccf80bf576684c0f9963f2bfe276243c29d54b305657d151693925fc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2cc4a471ca --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7782c3cb6d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/anat/sub-ubc05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36868--ebd2d434702bd4bf814213c0ccdb44c71b22374d8b36f27ed42cf6111b54abf8.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc03/anat/sub-ubc03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2738ca6c36 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc05/dwi/sub-ubc05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1045--1b3b2eb5d29f3a851a603974e5a6a9ebd58d844bd0b4822b4a8cfbd62fdf8156.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1aed6e4191 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7367--93a95a35287fa709ff25b32196caa0cb3ba53f9638cfef22b7499f8a69acdb5f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f6b4b40e0b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:55", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a7c75a9e0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7316--04d52597b58b64029bec38ef703984540bd15b2395eda54d64ea900519d43475.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b56e816b28 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1fbad403b9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91143--bb58fc16507d2db78f1a52be6e26ee6488fdbacd30265d8ca23905f0a6972fd6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0c44905d0a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..83c1509644 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14602--acf63983718dec6a2240efef0f4c243f7c4aa3dc055af31958a8dcb9ce55867c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..197223f7fa --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:56", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..81583362c4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/anat/sub-ubc06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36076--84958f9bae3d000a0373690a960bf9ae45b2f8632335d8c575edd1824c8e0e29.nii.gz diff --git a/derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ubc06/anat/sub-ubc06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c42493f5b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ubc06/dwi/sub-ubc06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1005--542bc215919526a583d6bba8d76185284ba6796d86a633406809fed07ad05827.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..97acf6c53f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7294--fe601314e7cf6e75ceb309e98fae5a8eca09a4814c8b8fe8006392350ff66785.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e582b5ac3c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7354--1a0b0583a9318cab443f6f891f184f4204676cab80be538a698fb258c2995286.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9bab82f458 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1f82804bc2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91575--c319ae09d0bfa94ed9b9b190c1515254b890d9be1eef5124655eaff29ebab22d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a127305914 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a9ef47467 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8063--98739ecbc2aa5ded5526963879d2016b78a22b1f143876c77aca3465327ef63f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c1836a8a67 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..00d06ee7e2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/anat/sub-ucl01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36427--bca96054652713f799af9875bc9ba7ead2667f7986dcf21c255a201ddcb22438.nii.gz diff --git a/derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucdavis06/anat/sub-ucdavis06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b79fa39996 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl01/dwi/sub-ucl01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s997--ea927d833194910dfdd2363b5e11d1006d1b5c852bb0da263dd877dc47b4fb9e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f39b410f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7418--c8fca11075bafd778e5fbf2930ccf9edb7e205541179d763426ed5434e7d6d55.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..36f825e009 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dffb513e32 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7366--e244bce922bfcf833464a97cb89fd6706f9d69ed5e0103e3c5d8c129eb99cfd1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9bab82f458 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz 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exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..03395817a4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8206--419cc0afac2f7355a5475a9ede703613178ff32051e0b7e12eddf26a6ba37cf6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c1836a8a67 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:57", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0764a1b9f5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/anat/sub-ucl02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37210--8d6ccc67f11c313308e5bcbe7a473e106a6ce9d5407dfe00475796c24f429c12.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..8609f880b5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl02/dwi/sub-ucl02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s993--d350e2a600f4c4c18fc413440d7a13e61b9a4b13a54541ad77c518904bc3dd96.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5953c45204 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7346--b021db7a94eba2212f8d0b3c38d8b58032732ebe7ed96947121a06ceb5b63e0a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5272470cee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7353--877fd9eef2a87cee91d17060b08796fbd1be2b49cfe937ff9bdbc535bd0cf465.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fbd2176c91 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91324--764cedfb6c37e4a4af547b835203f45bb34edefe26f64c0e9d4a1c2fd4eec945.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..096c5e0c9c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8025--0b9b5eafe8b5c80d7b95313a5bb8bcdce1ac35bd0ff1ee2dbdedc23d3525f3c2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e5f9b81e57 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/anat/sub-ucl03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36633--5b549bcfc416946cc4c3191bbae93a9fa3c807972133b98495ecdbd4e17d7548.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6082474d8d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl03/dwi/sub-ucl03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s983--b8c8f03c1dd775965d924781e5dcdb34b5ca966daa57ddc0884b2d4f2225f6ce.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..5f32472532 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7314--18593c63e83f8636a0768e2493c9182e49ea6cab3307db9dc91735ced55faa1e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..79c1c5d95f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7273--47d5006afdb2981d6528e1fc41eedb88e08ce2370d38fdde718d07cc91d321f4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc639f7a08 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91088--35a8bfe724f6baa1c00af5385a5f70ea1d23a82949dff290b82e56bfab5ff63d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df5eae8255 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7983--e0aae989d423ea7607af27f7774cf1108e904f7507711816b594db40f60a2808.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a9ba69305 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/anat/sub-ucl04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35909--915cf71d04ccde070eb73d60f26c580bbc29964f4eb15c8bc1d5382658d35d4f.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..548e472e17 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl04/dwi/sub-ucl04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s967--215bed190eef0bda31993f06e71eea8b23afb94855611ca2d6fbaba9fb028da9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2b7bf80fbd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7373--75276957c825014d7b400a718a873abebccc8138b25edbe9cf9beba3fc35ff11.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c117c7a46c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7295--a24d603adbd38318f82c44b80ff065a68045b2f0e6f596891c73592679376be3.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9638d4137d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91100--40e742d0341fcb21284e6219750a995c000948d5d3be262fd49ce77db57ed02a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..aef077877d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8174--3fe36f1c9388717ff5bdbed1e48f0c613c304e38484b5257918734b69c952d68.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a843b2a74 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/anat/sub-ucl05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36632--cac3f6665907532265fb6fcf141cb24c6fdbfd334a76edc893748e45b89b4896.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a521f5e61e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl05/dwi/sub-ucl05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1013--27fe0bad6f973787bd06b1c9cfa015466d58d73cc394c240aeef239aa3243f2b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fd9eaf3d44 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7345--f0cbfd427a5d2df406d6d8ec49c24aa2541a16606983d92e41747654d95f37f6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4a86023286 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7256--a19677dc7895009460c3eda886af4ba28b0e3465bf5a412f68ad204371430ccc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9c45a8862d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s90888--8571515d7b43fdd014e37d209c085c3be889237ecf1c3513737616328bd95a20.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1c1fec505a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9062733327 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8076--3b51f8da9e9b1ee7b07be9846f0e4b04ecfa3b83c1addfb26783a98b220b345c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..02673d345b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..29060ab4fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/anat/sub-ucl06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s35509--baab7301eb82fe9990fab5e99baee275a476189f3c45766c7f276cb47018fae2.nii.gz diff --git a/derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-ucl04/anat/sub-ucl04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..336c8478dd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-ucl06/dwi/sub-ucl06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s984--4060c7fdd50e225fa9b7714f4040c44ddbd7a107f9f7e0e3a39419708e7d148d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..264fb197cd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7365--3457de1a9732502dcf07f4363a7d7b36e59331f955697001c8b2c24a1c3328ed.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3f894fc92f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3eb03489f0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7289--2d1a50362eaf846c98c9c2041c1117051aa31894ee5291221b1aabfd6ced5221.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c5a7c1d9a3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:58", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cd829cbb53 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75161--154c256c477949922556b5a2e63a10a64915b275b87c8eb282b5d4af8863eb96.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4e92ffdd14 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14811--02bd3232d1e927685dc8c48a397412b9e98d862809c39df155438d5450ca3a65.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0ee841ed0a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/anat/sub-unf01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37520--6fa2f5cbbc183b5910cc27c1c7cc17d1529118a6adc8309358870e4c6a882a2a.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-unf01/dwi/sub-unf01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-unf01/dwi/sub-unf01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf01/dwi/sub-unf01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf01/dwi/sub-unf01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fcc8bef279 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf01/dwi/sub-unf01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1019--219e9e1457f6c42610c8cdeff4a07fc53f8332b214bfa186a53ccda959d8c560.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..58e9147300 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7301--bd385a467d69383a601d438e26474918acf5bcd14fa825755e106bbe9fc5891c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ae08e667ec --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7189--cc89d4dcd63c93ab784625684ea3835e86856e0de4aaa59f2e1816a2732108ec.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fa4806131d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75344--4b92cdacb745b26d57b23c42826510bb2bf70e01c3ca78035ffc20b82ee3b7b8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..19d3af8bcd --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14647--c8a259ed77f119b9ba3c3c8a0d9399c507d917f8c025bd04266e4b2f6e196802.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f32dbc2311 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/anat/sub-unf02_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37080--800f8e2492376ba3bc5fc623d8ad7c410a8749f23cf5c106125943cc0974bc51.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-unf02/dwi/sub-unf02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf02/anat/sub-unf02_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-unf02/dwi/sub-unf02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf02/dwi/sub-unf02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf02/dwi/sub-unf02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4c6cde18c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf02/dwi/sub-unf02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1026--771d70c36d0adc9462d20b0f3a60a816b8f2acd8c3a86522e2f1ebc975c6ac0d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fc262396b8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7186--870c85741e3341657ed2a0f8dcefa348b933192c15f0ffb47d321436eedcec92.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee80b7ea06 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7177--cd7c774574a14b4bb3971107ec34ddea2b0ecdb79ed6be4c3f82d536fa04501b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..50fa5a7f24 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74648--72a0ec733b8df676875b157b136c61994f12b0ba84482b38294e70fbbd7ebe8b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..899c6070eb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14576--e34ea85da1617ebab11ed2dd0093d23ccdf696af463947695dc0b5bcac61ecac.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e0ac7e87b3 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/anat/sub-unf03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36721--ae51544b123c1b9a2f35f6b779c052814bfa820dbd82ba001758b2689dda0e89.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-unf03/dwi/sub-unf03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-unf03/dwi/sub-unf03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf03/dwi/sub-unf03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf03/dwi/sub-unf03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1e7710cf91 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf03/dwi/sub-unf03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s933--99ca0c163755b0680083c807a4a72f9d928231a92f9f303f4fe48c5edd1ba3e9.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..904f31b5b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7303--a0322d8463a467331a68fbe4c3ed380ea71f56dc699a34351b47e8f8888f624e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..28271f3edf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7213--dc910416e44e0ab5a72adcb6a4591dc92ec91d5021f72f14b3479f8d0a27cdc2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..4bbee2a455 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75305--1e419be14880b5ec0b8ec93ac3f4ff5f30150a0059d51bf3e342c22b70ca5395.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..b5368e3cdb --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..05634f2ddf --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14753--853cd489ea3668a2c75fff3830d0f34b53a6d0188c72075a90080504633f5e92.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..613dd8c66f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9a6eb242c4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/anat/sub-unf04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38243--0e7449c44af92d966b25941e7e92e8b5e87137d9ae96a9d54a5896edc34ce837.nii.gz diff --git a/derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-unf04/dwi/sub-unf04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf02/anat/sub-unf02_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-unf04/dwi/sub-unf04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf04/dwi/sub-unf04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf04/dwi/sub-unf04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fe6758f151 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf04/dwi/sub-unf04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s984--12e4bd846f804af680d001479497dc43581d54c027b97c39a7215af056cc68d8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..520a7880e8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7200--a9b7cd59a00a38c423427b2686d831fb689952e2e575bc3caca472577b85134f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d390eb3a9e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7438ab1b24 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7198--9898bfe9a97e3c4c8929d7844c05b19984615444e4e7fa22f01f5386a8e494c5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..a0f1676066 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:36:59", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..bde70e60b5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75272--ecbb27ed0304d3c12d1922a6cc827a7f28ba39e35e52e7b10aef2a0ea452a8d2.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dc4246dce8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14613--7e19baed8929931ff584c67d20a39b4827c76a2564e176d2cb148250b434c89a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ac7d9efe18 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/anat/sub-unf05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36430--3f2c36f4a9de6e8488b6aa1d52ff317df868f109f14cf67c9877c7298d9bd984.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2star_softseg.json b/derivatives/labels_softseg_bin/sub-unf05/dwi/sub-unf05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-unf05/dwi/sub-unf05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf05/dwi/sub-unf05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf05/dwi/sub-unf05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e0a72e6727 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf05/dwi/sub-unf05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s916--e389a9e66a3b2886560458b534ca7b66fc552ca69fec6035cb714a83b931aa31.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..138dca55ac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7366--6677a12e7667e0663b7d14b76d8a35b39ac6b4895cb93b790cba43683d78308c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b2daea4849 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7220--e7afde99373f2ed8e417daaed00b1dbc9787eec3350a1ce8e60fb5a7edfbbd9a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ba168c3c5c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fe10ed99d5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75306--c443eb4c1e18bc1d276a5af98383fa2183d783348a79c2bfb00437650fe7028e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ffbf7ed085 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14679--76ff53eed42f5e959572dbf50ccea6acaaeb4816407813505da8e8790ca8a6f7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..00fa30fc89 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/anat/sub-unf06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37103--07b2ab2019cc55a71223fbf0343b2ef60adb93e303cad8f1727a78674a617ccf.nii.gz diff --git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-unf06/dwi/sub-unf06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf06/anat/sub-unf06_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-unf06/dwi/sub-unf06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf06/dwi/sub-unf06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf06/dwi/sub-unf06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6f77d6f4fe --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf06/dwi/sub-unf06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s895--6424a99e0866821135c642da1d44ec806dd56f647db9aeadb16915ba5a86f0c0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a7e21e5715 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7393--fd78c90a19e7735563aff754fe57b39c5a7a3ef0a546806095225fa5e7104926.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..757d502544 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7265--99cb6da712124a41cd5bed4b408d98f14138bc7c9afd43e7be1a511f1434b160.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ba168c3c5c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..39c7feb6f7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75406--a5c9edd111be7f279935f7774b2313fab0518ccebd8bf3588573e1cf72dc38df.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1cb80b104c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14751--5bb86a59f73aad0cc96c65a19af2702ee3515b7292310b4d44f1683cc4df63e7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-unf07/anat/sub-unf07_space-other_T2w_desc-softseg_label-SC_seg.json 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--git a/derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-unf07/dwi/sub-unf07_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-unf06/anat/sub-unf06_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-unf07/dwi/sub-unf07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-unf07/dwi/sub-unf07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-unf07/dwi/sub-unf07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07a7092e09 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-unf07/dwi/sub-unf07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1013--f682990a89b2a2af639d03950cd097ca848e89fed18b8277e35346e49246b5d4.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..034628d3ab --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7342--a5490c49bb58005421371d635c99053694678b18f25bab454d1dfe1291f0019c.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..656f45d161 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7220--7a7be3c901cb693f1c26250f341ff5b8ade7fe3dfbaf8d60f65a8c8ebaa81a29.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..ba168c3c5c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a95914326 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74902--89d3f841abd3f0fdc3bd5f1da20267ee5427c77a188b0608d1125a94d5d30d25.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14767--67102852ba2a31826c98e8dba7ece3aa0a55118a94403bdd66799c22cc99d2cd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..c604376374 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/anat/sub-vallHebron01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git 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derivatives/labels_softseg_bin/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c299c016f4 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron01/dwi/sub-vallHebron01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1402--1df282730c9e0cf0fd893ee98c81b47d09484a5e1e1ae07a7e5d2c7e0005529a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- 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a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..05af99e192 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d3113da8d1 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1a61803757 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74359--a4eb5a790c6deb3ed233d217bbba8e1c3d594ffca6473a51292c817d6898c043.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..81efb1ee29 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:00", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfcb8fd895 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14702--570c669849fdb52ffc451de97e8e5a3ce5c59663234859f60118eb8933d47567.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron02/anat/sub-vallHebron02_space-other_T2w_desc-softseg_label-SC_seg.json 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a/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e51f9573c1 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7151--e7d2395081f8b375126023b77a48125f30dce1bf770b993012a4f4356572561a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f5bedd3d97 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e05814f12c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7158--35b07fff5bd2cd281726d98fc87a0f9b0e3e77128970e08f808f5d75e705f794.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74636--11bbc46983db5b8d1c1b91cdef4113abe8066ec14390dd01edac3391869c8868.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f12e0fa441 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron03/anat/sub-vallHebron03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git 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100% rename from derivatives/labels_softseg/sub-vallHebron03/anat/sub-vallHebron03_flip-2_mt-off_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36c0879a7e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1318--0cbfcdc97fe9ab1fe0b9057dbeda0635cac34748733a442c4f80303d0b6a15b0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json 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"Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..704047199e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s74674--ea917777cded96932bf0b17b3fc98fe0eb215a4c18500ba20e1b3bf61b78346f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f12e0fa441 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ee0a83c6ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14754--61026952535eae807d5322fc7a9f0e9ba108ed3a5602387fc68321a340b87fe5.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-vallHebron04/anat/sub-vallHebron04_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36863--0fd4a281618a215aad262e7dd6ebcb7a8bc8bfa6fb1bb28cff542d9c9a38c239.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron03/dwi/sub-vallHebron03_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron04/dwi/sub-vallHebron04_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..cf15b583ee --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ad2274a76f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75488--55302b3c812c76c9dbd1b6036aea39a2ecf71e2f716d58dda85e52629351a4d7.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f12e0fa441 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..46415a977d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14826--5e4038f400b6339659e53f13cf1c1a4157b7992f31fa90fa852244f8061284ca.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..4d5d061f63 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dee636691f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/anat/sub-vallHebron05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s38288--a29407ea0239913b38b45a5d045a7b1436813a850a98fe3599349a8ab94661f9.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron04/anat/sub-vallHebron04_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..12ff787756 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron05/dwi/sub-vallHebron05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1478--17c3e4a9e512819a83049015079828a870d6de38478a1e90ea319f2e40bbfcb1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f5bedd3d97 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:01", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..d3de2ed159 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ 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b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cffbe845b6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7236--94d3c9a4f7f95bb6f00177954285facb8064ccc338d0924022f009ea0c4d1a5f.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..91c5eb3ca5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..695b06e2e7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75299--48d7bf6b606e0ce363abd654af029a603216480cccfa13764076e3a1cdbd3c9b.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6468d6773f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f89a8e8c16 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14609--8849935a3766d3f240313add4d5855759b3d93454c6e62e87069f9b5c2d312ac.nii.gz diff --git 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b/derivatives/labels_softseg_bin/sub-vallHebron06/anat/sub-vallHebron06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36990--6d766e0d6ce3fa1b0beeff803fbe1ec68cd4945b54341167071efbda5ef4e159.nii.gz diff --git a/derivatives/labels_softseg/sub-vallHebron07/anat/sub-vallHebron07_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vallHebron07/anat/sub-vallHebron07_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron06/dwi/sub-vallHebron06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ff4afe9a79 --- 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a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..1165e3c39a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7332--5648131063aaf7fedbee41522dfe7e694292e70852c15900f3d8adbc67afc231.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d247f901de --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ec5eccb948 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7184--cb9feeed075993c53f2f98fb943289dbacf304bb417c93e0b1f3f6de442eae72.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..91c5eb3ca5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3cc2172ffc --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s75016--ef668f6d8cd55668018183be332edb9cfbed2c476598f91d65e526b29d4c89d0.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6468d6773f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..6db73711d2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s14702--b59f1363f8e328d2350cf82676f8eec68a771ed3b01b00830226c51c659d076e.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..746e64424f --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/anat/sub-vallHebron07_space-other_T2w_desc-softseg_label-SC_seg.json @@ 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from derivatives/labels_softseg/sub-vallHebron07/anat/sub-vallHebron07_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..fb483fcf87 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vallHebron07/dwi/sub-vallHebron07_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1328--696809195c7db836da742a34960abdcc4dde791c7f206404b4e64b9e998b3604.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d247f901de --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..e13732daa5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva01/anat/sub-vuiisAchieva01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..013240d052 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7344--03a041c8c6f8b94f25ef6cf22d25442dfecc6f2e500c1575b8f79bfced5de519.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..d247f901de --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..91c5eb3ca5 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..003554ea59 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..f743800b8a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8191--0b152b011f0fe1044b170aaf2b7303315a106b1582a1d3883d42c424e1fef351.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva02/anat/sub-vuiisAchieva02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..746e64424f --- /dev/null +++ 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+ "Date": "2022-10-22 14:37:02", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dd2d2b5f40 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7355--561d8e4b8136800cc8c6a8824bd9a05737efd5a3cf27a3bfe9c8eb5051aec8a8.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..acd4277f45 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/anat/sub-vuiisAchieva03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37273--fe2776793422f362e36063040061e46a92c17a692a783d50be02444d7d045e33.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva03/dwi/sub-vuiisAchieva03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T1w_softseg.json rename to 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..88dd07657a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7363--1fc8e79459ee997c4c5e610f7b92fbcd06908c828b183418704ef575fc06c061.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..0b8414ad6b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8104--cf8c5e1c68fc3fdfb84fdf2701c5fcca3e7abead9657b89bfb137d5adf4962f1.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..9debc010f6 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a4cce87829 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/anat/sub-vuiisAchieva05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36410--5df53a429e248c8c80ad863fbdf797b634c33b8c67154c330f11df69140073e9.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..edcd3d7334 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva05/dwi/sub-vuiisAchieva05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s965--6749e7d06ed81888416fd652fe1740665183dc542f28f6947c13dd21fe15a4a4.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..95be4b4d71 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7358--baed9ecaccd6c885cf18fabd9e409bfc2d79baaaef891ae0bb40496d8f60ab6a.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..2ccbfcf9f6 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..053bd33493 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..811511752e --- 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a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2787a2463b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/anat/sub-vuiisAchieva06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36984--160702e4c16de8d77d8519b247316d1146aca9241afb78c4636488ac93dc2cde.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisAchieva04/anat/sub-vuiisAchieva04_flip-1_mt-on_MTS_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7213ce087c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisAchieva06/dwi/sub-vuiisAchieva06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s992--0f44aac0e2331839e3b28f2cf95d4673ad526ffe0fab80d718021b277439f443.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..0808d265ac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:03", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3e3ef6b645 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7441--0809210685b6e5dc5eeabff322ce8fce965e590e518c19cf5c8df08a6325dabe.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7a1ee00281 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s92180--58009686a6c312d4f90e993fb66e04f3541ad167a100cdac59ca53738bcd7a76.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8f988385da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9b3d2c7938 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8202--899eb73fd80184cac1d097507fdead7947b20647850d27a708168368ef8ef597.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1237335345 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..24ee257e15 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/anat/sub-vuiisIngenia01_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36790--42fdbfb81d16056f8997a74cde3912102f51c1defab9276318c65ff12ff114f9.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T1w_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..07096146f8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia01/dwi/sub-vuiisIngenia01_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1033--323a3fab6bde9355608e9fc9242b33381a0e66805fe95ae95c3cddeeb11d43d6.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..887ddc0f8a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7410--1b8860a03474e8278d1a2608110ac3545804daeca5190ab0f055596dd3a137cc.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c5afaf17d9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7372--ed64a8e9ec039e81ef0077225d625fe75b6941ec9bd29bf055239c95d8e1fed5.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..adaf5ab274 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8234--3d28dd55bc2590a839c4045ae1a49811009f6a0eb5f103ff65d6b52862b1efcf.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..1237335345 --- /dev/null +++ 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b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2star_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..b54c902fd2 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia02/dwi/sub-vuiisIngenia02_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1017--87980da0908223b760225a4085e022fa1b2e8246f78cbf04cad0055419945efd.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..085c4c86c2 --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c61109cdda --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7304--7053da29714f214cbf79a5793c498b95827d8e425deaa4cf212f54577d6c1b84.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..89f0f0d48e --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..627ab85e80 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91491--eac478ff9f289fe2d3bc312e2578be67a6ab841265c1e0fab06939d6f1b93044.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8f988385da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..92530e4592 --- 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..a6e1f9d3c8 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/anat/sub-vuiisIngenia03_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36095--bc7aae1b85475e80d744a075e4bf84af90f445a3f2aeff32a6e644643e5835e6.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia02/anat/sub-vuiisIngenia02_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..dad8ff3031 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia03/dwi/sub-vuiisIngenia03_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s995--644eb10f9ea4dbc98bab9bbbafc03d1b267ac30fbf534e5851713d94dd321883.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2ed8c01df9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91442--81cbf306c0741e3b0b94bd3e32e9fe5833c7e9a386120bf803a396249c07c6b5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..8f988385da --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:04", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..89720cdef9 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia04/anat/sub-vuiisIngenia04_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8038--15978a92640a4e5aab70a08725348d9cb04f0ed3dd0254cceba332a40423c259.nii.gz diff --git 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..df30332a66 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7410--28916d23cef6a8b38585549f51bda778f4d5b81260d409985f72793f2894d838.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..6823e6c48b --- /dev/null +++ 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a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..36435d5ca0 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8166--7c37ad8f1e76f0fc3c76f6a83a168cec9b4285dc2d85878629501ae318effc5d.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..eaf03bec4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..9d913a8437 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s36294--98a49928b4799e264706b24741bfd0075548b743da131affb7b4e574a8930f2e.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia05/anat/sub-vuiisIngenia05_T2w_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..2824806117 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1005--c8fd87e645549549cb1f93fe86e7e478c7f1c555c2a8a3550c5636abffd5d852.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3ed004d900 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..c03b7fb7b7 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-1_mt-on_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7411--54a8a86dc6a3a5c9b82913b48bbee2f1744b1694b5abac5910e8d46ab9553270.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..3ed004d900 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.json @@ -0,0 +1,7 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..ebfcc35c55 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_flip-2_mt-off_space-other_MTS_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s7369--20e6c8112b3446093b89c1d11b5b9b851770a69616f26ca09fca4ac95b62b580.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..7646dd501d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "1x1x1", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..11638bb42a --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T1w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s91624--43a800dce48ecdd1c84034c023d549159bac6f4877089682ec39ba705e772aa5.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..f106b68fac --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Reorientation": "RPI", + "Other": "root-mean square across 4th dimension (if it exists)" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..cfdcf07565 --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2star_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s8146--b2d9a514ffb12eb21f6972df1ccef4d9b6e558e6bb24949d2dcd3254d91d5038.nii.gz diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json new file mode 100644 index 0000000000..eaf03bec4c --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.json @@ -0,0 +1,8 @@ +{ + "Author": "Sandrine Bedard", + "Date": "2022-10-22 14:37:05", + "SpatialReference": { + "Resampling": "0.8x0.8x0.8", + "Reorientation": "RPI" + } +} \ No newline at end of file diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..7d84c6173d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/anat/sub-vuiisIngenia06_space-other_T2w_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s37167--f424d68e35f5a3a4384744dfddf59a936cf15460ebdded8b40249a8124fb4810.nii.gz diff --git a/derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_softseg.json b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.json similarity index 100% rename from derivatives/labels_softseg/sub-vuiisIngenia05/dwi/sub-vuiisIngenia05_rec-average_dwi_softseg.json rename to derivatives/labels_softseg_bin/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.json diff --git a/derivatives/labels_softseg_bin/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz new file mode 100644 index 0000000000..3d1e70595d --- /dev/null +++ b/derivatives/labels_softseg_bin/sub-vuiisIngenia06/dwi/sub-vuiisIngenia06_rec-average_dwi_desc-softseg_label-SC_seg.nii.gz @@ -0,0 +1 @@ +/annex/objects/SHA256E-s1037--d02d189564c4ecc01419955989faccd70cb0747e3d375d9201403cf0b4247069.nii.gz