Remove default ref file size

BD2KGenomics · Dec 1, 2016 · 86fabdc · 86fabdc
1 parent a38f759
commit 86fabdc
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Showing 2 changed files with 2 additions and 3 deletions.
diff --git a/src/toil_scripts/gatk_germline/germline.py b/src/toil_scripts/gatk_germline/germline.py
@@ -447,9 +447,7 @@ def download_shared_files(job, config):
  setattr(config, name, job.addChildJobFn(download_url_job,
  url,
  name=name,
- s3_key_path=config.ssec,
- disk='15G' # Estimated reference file size
- ).rv())
+ s3_key_path=config.ssec).rv())
  finally:
  if getattr(config, name, None) is None and name not in nonessential_files:
  raise ValueError("Necessary configuration parameter is missing:\n{}".format(name))

diff --git a/src/toil_scripts/gatk_germline/test/test_germline.py b/src/toil_scripts/gatk_germline/test/test_germline.py
@@ -215,6 +215,7 @@ def _get_default_inputs(self):
  inputs.sorted = False
  inputs.cores = 4
  inputs.xmx = '8G'
+ inputs.file_size = '1G'
  inputs.output_dir = self.workdir
  inputs.suffix = ''
  inputs.unsafe_mode = False