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Add cloud pilot quality control workflows #380

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fnothaft opened this issue Jul 25, 2016 · 0 comments
Open

Add cloud pilot quality control workflows #380

fnothaft opened this issue Jul 25, 2016 · 0 comments
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firecloud ready spark/adam

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fnothaft commented Jul 25, 2016 •
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See BD2KGenomics/cgl-docker-lib#150.
@fnothaft fnothaft self-assigned this Jul 25, 2016
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
0cbbc7d 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
04ebd7a 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 25, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
417fcaf 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
fef077d 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
1b35411 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
716dd26 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Jul 26, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
6881e4a 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
fnothaft added a commit to fnothaft/toil-scripts that referenced this issue Aug 1, 2016
@fnothaft
Adding quinine QC functions, and quinine_pipelines (resolves BD2KGeno…
eed1ef8 
…mics#380)

* Adds the quinine tool (https:/bigdatagenomics/quinine) along with
  helper functions for running QC on targeted sequencing panels, RNA-seq data,
  and for estimating sample contamination.
* Instantiates these as command line tools in
  `toil_scripts.quinine_pipelines.metrics`.
@ejacox ejacox added ready and removed in progress labels Jul 31, 2017
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