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Rename stringbyte and avoid pirating BioSymbols #200

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merged 1 commit into from
Oct 31, 2021

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@jakobnissen jakobnissen commented Oct 26, 2021

Fix #198, companion PR to BioJulia/BioSymbols.jl#48. See the PR to BioSymbols.

This change is not breaking. The changed function was undocumented and unexported.

⚠️ This depends on BioSymbols 5.1.0 (more specifically PR 48) which is not yet released. ⚠️

* Rename the un-released method `stringbyte(::Alphabet, ::UInt8)` to `ascii_encode`
* Remove the un-released method `stringbyte(::BioSymbol)` to BioSymbols
* Bump required BioSymbols ver to 5.1.0 to include new code in BioSymbols
@jakobnissen jakobnissen linked an issue Oct 26, 2021 that may be closed by this pull request
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codecov bot commented Oct 31, 2021

Codecov Report

Merging #200 (5736419) into v3 (00491c0) will increase coverage by 0.02%.
The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##               v3     #200      +/-   ##
==========================================
+ Coverage   82.86%   82.89%   +0.02%     
==========================================
  Files          31       31              
  Lines        2399     2397       -2     
==========================================
- Hits         1988     1987       -1     
+ Misses        411      410       -1     
Flag Coverage Δ
unittests 82.89% <100.00%> (+0.02%) ⬆️

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Impacted Files Coverage Δ
src/alphabet.jl 81.53% <100.00%> (+1.23%) ⬆️
src/longsequences/copying.jl 97.76% <100.00%> (-0.02%) ⬇️

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@jakobnissen jakobnissen merged commit fdad21d into BioJulia:v3 Oct 31, 2021
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Merging this - the failed doc build was due to a pkg server issue, I think.

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Don't recommend users engage in type piracy with stringbyte
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