[DR-2597] Bump jib to 3.2.0 for skaffold 1.38.0 compatibility

[okotsopoulos]

https://broadworkbench.atlassian.net/browse/DR-2597

When I onboarded, skaffold 1.38.0 was installed via our team brewfile. The team members I've talked to all have skaffold <= 1.35.1. This later version requires a later version of jib:

FAILURE: Build failed with an exception.

* Where:
Build file '/Users/okotsopo/jade-data-repo/build.gradle' line: 29

* What went wrong:
An exception occurred applying plugin request [id: 'com.google.cloud.tools.jib', version: '2.7.1']
> Failed to apply plugin 'com.google.cloud.tools.jib'.
   > Jib plugin version is 2.7.1 but is required to be 3.2.0

Which itself required a workaround for nonexistent extraDirectories (jib PR where this enforcement was added):

FAILURE: Build failed with an exception.

* What went wrong:
Execution failed for task ':jib'.
> extraDirectories.paths contain "from" directory that doesn't exist locally: /Users/okotsopo/jade-data-repo/build/gen-expanded

I was then able to skaffold run and see my new ok-jade-datarepo-api pod running.

Debugging in Slack: https://broadinstitute.slack.com/archives/C01VBGH431S/p1652730508162889

Request

Could someone with skaffold 1.35.1 (@nmalfroy ?) please check this branch out and see if skaffold run works for you?

[snf2ye]

Which itself required a workaround for nonexistent extraDirectories (GoogleContainerTools/jib#3542 where this enforcement was added)

Oh nice - great find and thanks for linking in the PR! Thanks for fixing this and allowing the upgrade.

[samanehsan]

I checked out this branch and was able to do a scaffold run on skaffold v1.3.1!