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Many MeSH identifiers are reported as being unmapped #147

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gaurav opened this issue Jun 17, 2024 · 0 comments
Open

Many MeSH identifiers are reported as being unmapped #147

gaurav opened this issue Jun 17, 2024 · 0 comments

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@gaurav
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gaurav commented Jun 17, 2024

From our logs:

2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:D014750
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:D007631
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C445068
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C025643
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C073734
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C016599
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C007262
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:D008767
2024.06.17 22:08:52 [WARN] org.renci.translator.ctd.Model.actorType:56:20 - No mapping for MESH: MESH:C017803

I'm guessing this is because they are missing from chebi_mesh.tsv, but we can normalize these with NodeNorm (example for MESH:C007262). Will these get picked up later, or should we incorporate NodeNorm normalization into this conversion step?

@gaurav gaurav added this to the CAM KP July 2024 milestone Jun 17, 2024
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