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debug, new modules, and code improvements #46

Merged
merged 51 commits into from
Jun 24, 2024
Merged

debug, new modules, and code improvements #46

merged 51 commits into from
Jun 24, 2024

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abearab
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@abearab abearab commented Jun 23, 2024 •
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  • Switch from python 3.9 to >3.11
  • Update README
  • Added load function for coessentiality

related to #45

  • Made Manager the parent class and include subclasses
  • Fixed imports and installations
  • Add functional candi-install and candi-uninstall scripts to CLI

close #41

  • Removed R scripts for DESeq2 analysis
  • Add pipeline folder, started with diffexp module

close #39

@abearab abearab requested a review from Yogiski June 23, 2024 09:26
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abearab commented Jun 23, 2024
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@Yogiski Hi Chris, I made some changes and it should also fix the import issue we discussed here #41. If you have time, please let me know what you think before I merge the PR. Thanks a lot!

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abearab commented Jun 24, 2024
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LGTM!

@abearab abearab merged commit 7a63899 into master Jun 24, 2024
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@Yogiski Yogiski Awaiting requested review from Yogiski

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Successfully merging this pull request may close these issues.

Fix candi-install errors Replace R DESeq2 script with Python alternative
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@abearab @Yogiski