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parallelnsga2r.cpp
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parallelnsga2r.cpp
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/* NSGA-II routine (implementation of the 'main' function) */
#include <stdio.h>
#include <stdlib.h>
#include <math.h>
#include <fstream>
#include <list>
#include <sys/stat.h>
#include <dlfcn.h>
#include <vector>
#include <stdio.h>
#include <algorithm>
#include "global.h"
#include "rand.h"
#include "problemdef.h"
#ifdef USE_MPI
#include <mpi.h>
#endif
#ifdef USE_OPENMP
#include <omp.h>
#endif
int nreal = 0;
int nbin = 0;
int nobj = 0;
int ncon = 0;
int popsize = 0;
double pcross_real;
double pcross_bin;
double pmut_real;
double pmut_bin;
double eta_c;
double eta_m;
int ngen = 0;
int nbinmut = 0;
int nrealmut = 0;
int nbincross = 0;
int nrealcross = 0;
int *nbits = NULL;
double *min_realvar = NULL;
double *max_realvar = NULL;
double *min_binvar = NULL;
double *max_binvar = NULL;
int bitlength = 0;
int mpiProcessors = 1;
int numThreads = 1;
int procRank = 0;
std::vector<std::string> problemOptions;
problemDef problemDefinition = nullptr;
problemDefInitialize problemDefinitionInitialize = nullptr;
int currentGen = 1;
int max_nbits = 0;
int DIE_TAG = 9999;
std::vector<std::string> splitText(const std::string &text, const std::string &delim)
{
std::vector<std::string> parsed;
size_t start = 0;
size_t end = text.find(delim);
while (end != std::string::npos)
{
parsed.push_back(text.substr(start, end - start));
start = end + delim.length();
end = text.find(delim, start);
}
parsed.push_back(text.substr(start, end));
return parsed;
}
std::string fileExtension(const std::string &filePath)
{
if (filePath.find(".") != std::string::npos)
{
return filePath.substr(filePath.find_last_of("."));
}
else
{
return "";
}
}
bool replace(std::string &str, const std::string &from, const std::string &to)
{
size_t start_pos = str.find(from);
if (start_pos == std::string::npos)
return false;
str.replace(start_pos, from.length(), to);
return true;
}
void replaceAll(std::string &str, const std::string &from, const std::string &to)
{
if (from.empty())
return;
size_t start_pos = 0;
while ((start_pos = str.find(from, start_pos)) != std::string::npos)
{
str.replace(start_pos, from.length(), to);
start_pos += to.length(); // In case 'to' contains 'from', like replacing 'x' with 'yx'
}
}
bool fileExists(const std::string &name)
{
struct stat buffer;
return (stat(name.c_str(), &buffer) == 0);
}
void abortNSGA(int rc = 0)
{
#ifdef USE_MPI
printf("abort called \n");
MPI_Abort(MPI_COMM_WORLD, rc);
#else
printf("abort called \n");
exit(1);
#endif
}
void setProblemDefinitionFromIndex(int problemIndex)
{
switch (problemIndex)
{
case 0:
{
problemDefinition = &test_problem_sch1;
}
break;
case 1:
{
problemDefinition = &test_problem_sch2;
}
break;
case 2:
{
problemDefinition = &test_problem_fon;
}
break;
case 3:
{
problemDefinition = &test_problem_kur;
}
break;
case 4:
{
problemDefinition = &test_problem_pol;
}
break;
case 5:
{
problemDefinition = &test_problem_vnt;
}
break;
case 6:
{
problemDefinition = &test_problem_zdt1;
}
break;
case 7:
{
problemDefinition = &test_problem_zdt2;
}
break;
case 8:
{
problemDefinition = &test_problem_zdt3;
}
break;
case 9:
{
problemDefinition = &test_problem_zdt4;
}
break;
case 10:
{
problemDefinition = &test_problem_zdt5;
}
break;
case 11:
{
problemDefinition = &test_problem_zdt6;
}
break;
case 12:
{
problemDefinition = &test_problem_bnh;
}
break;
case 13:
{
problemDefinition = &test_problem_osy;
}
break;
case 14:
{
problemDefinition = &test_problem_srn;
}
break;
case 15:
{
problemDefinition = &test_problem_tnk;
}
break;
case 16:
{
problemDefinition = &test_problem_ctp1;
}
break;
case 17:
{
problemDefinition = &test_problem_ctp2;
}
break;
case 18:
{
problemDefinition = &test_problem_ctp3;
}
break;
case 19:
{
problemDefinition = &test_problem_ctp4;
}
break;
case 20:
{
problemDefinition = &test_problem_ctp5;
}
break;
case 21:
{
problemDefinition = &test_problem_ctp6;
}
break;
case 22:
{
problemDefinition = &test_problem_ctp7;
}
break;
case 23:
{
problemDefinition = &test_problem_ctp8;
}
break;
default:
{
problemDefinition = &test_problem_sch1;
}
break;
}
}
void setProblemDefinitionFromLibrary(const std::string &libraryPath, const std::string &functionName, const std::string& initializeFunctionName, void * & handle)
{
if(fileExists(libraryPath))
{
#ifdef _WIN32 // note the underscore: without it, it's not msdn official!
#else
handle = dlopen(libraryPath.c_str(), RTLD_LAZY);
if(handle)
{
problemDefinition = nullptr;
*reinterpret_cast<void **>(&problemDefinition) = dlsym(handle, functionName.c_str());
if (problemDefinition == nullptr)
{
printf("Could not open library function: %s", functionName.c_str());
abortNSGA();
}
if(initializeFunctionName.size())
{
problemDefinitionInitialize = nullptr;
*reinterpret_cast<void **>(&problemDefinitionInitialize) = dlsym(handle, initializeFunctionName.c_str());
if (problemDefinitionInitialize == nullptr)
{
printf("Could not open library function: %s", initializeFunctionName.c_str());
abortNSGA();
}
}
}
else
{
printf("Could not open library: %s", libraryPath.c_str());
abortNSGA();
}
#endif
}
}
void closeLibrary(void *&handle)
{
printf("Closing external library handle...\n");
if (handle != nullptr)
{
#ifdef _WIN32 // note the underscore: without it, it's not msdn official!
#else
dlclose(handle);
handle = nullptr;
#endif
}
}
int main(int argc, char **argv)
{
void *fhandle = nullptr;
bool printAllIndividuals = false;
if (argc < 2)
{
printf("\n Usage ./nsga2r random_seed <inputfile>\n");
exit(1);
}
#ifdef USE_MPI
{
int allowed = 0;
int rc = MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &allowed);
// int rc = MPI_Init(&argc,&argv);
if (rc != MPI_SUCCESS)
{
printf("Error starting MPI program. Terminating.\n");
abortNSGA(rc);
}
else
{
printf("MPI initialized successfully.\n");
MPI_Comm_size(MPI_COMM_WORLD, &mpiProcessors);
MPI_Comm_rank(MPI_COMM_WORLD, &procRank);
int len = 0;
char processor_name[MPI_MAX_PROCESSOR_NAME];
MPI_Get_processor_name(processor_name, &len);
printf("Proc %i/%i\n", procRank, mpiProcessors);
}
}
#else
{
printf("MPI is disabled\n");
}
#endif
//read parameters
seed = (double)atof(argv[1]);
if (seed <= 0.0 || seed >= 1.0)
{
printf("\n Entered seed value is wrong, seed value must be in (0,1) \n");
abortNSGA();
}
if (argc > 3)
{
if (std::string(argv[3]) == "-p")
{
printAllIndividuals = true;
}
else
{
printAllIndividuals = false;
}
}
std::string inputfile(argv[2]);
std::fstream inputFStream;
inputFStream.open(inputfile, std::fstream::in);
std::string line;
if (inputFStream.is_open() && std::getline(inputFStream, line))
{
popsize = stod(line);
if (popsize < 4 || (popsize % 4) != 0)
{
printf("\n population size read is : %d", popsize);
printf("\n Wrong population size (needs to be a multiple of 4 entered), hence exiting \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
ngen = stoi(line);
if (ngen < 1)
{
printf("\n number of generations read is : %d", ngen);
printf("\n Wrong nuber of generations entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
nobj = stoi(line);
if (nobj < 1)
{
printf("\n number of objectives entered is : %d", nobj);
printf("\n Wrong number of objectives entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
ncon = stoi(line);
if (ncon < 0)
{
printf("\n number of constraints entered is : %d", ncon);
printf("\n Wrong number of constraints enetered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
nreal = stoi(line);
if (nreal < 0)
{
printf("\n number of real variables entered is : %d", nreal);
printf("\n Wrong number of variables entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (nreal > 0)
{
min_realvar = (double *)malloc(nreal * sizeof(double));
max_realvar = (double *)malloc(nreal * sizeof(double));
for (int i = 0; i < nreal; i++)
{
if (std::getline(inputFStream, line))
{
std::vector<std::string> split = splitText(line, " ");
if (split.size() == 2)
{
min_realvar[i] = stod(split[0]);
max_realvar[i] = stod(split[1]);
if (max_realvar[i] <= min_realvar[i])
{
printf("\n Wrong limits entered for the min and max bounds of real variable, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
}
if (std::getline(inputFStream, line))
{
pcross_real = stod(line);
if (pcross_real < 0.0 || pcross_real > 1.0)
{
printf("\n Probability of crossover entered is : %e", pcross_real);
printf("\n Entered value of probability of crossover of real variables is out of bounds, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
pmut_real = stod(line);
if (pmut_real < 0.0 || pmut_real > 1.0)
{
printf("\n Probability of mutation entered is : %e", pmut_real);
printf("\n Entered value of probability of mutation of real variables is out of bounds, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
eta_c = stod(line);
if (eta_c <= 0.0)
{
printf("\n The value entered is : %e", eta_c);
printf("\n Wrong value of distribution index for crossover entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
eta_m = stod(line);
if (eta_m <= 0.0)
{
printf("\n The value entered is : %e", eta_m);
printf("\n Wrong value of distribution index for mutation entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
}
if (std::getline(inputFStream, line))
{
nbin = stod(line);
if (nbin < 0.0)
{
printf("\n number of binary variables entered is : %d", nbin);
printf("\n Wrong number of binary variables entered, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (nbin > 0)
{
nbits = (int *)malloc(nbin * sizeof(int));
min_binvar = (double *)malloc(nbin * sizeof(double));
max_binvar = (double *)malloc(nbin * sizeof(double));
for (int i = 0; i < nbin; i++)
{
if (std::getline(inputFStream, line))
{
std::vector<std::string> split = splitText(line, " ");
if (split.size() == 3)
{
int nbitssize = stoi(split[0]);
nbits[i] = nbitssize;
min_binvar[i] = stod(split[1]);
max_binvar[i] = stod(split[2]);
if (max_binvar[i] <= min_binvar[i])
{
printf("\n Wrong limits entered for the min and max bounds of binary variable, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
}
}
max_nbits = *std::max_element(nbits, nbits);
if (std::getline(inputFStream, line))
{
pcross_bin = stod(line);
if (pcross_bin < 0.0 || pcross_bin > 1.0)
{
printf("\n Probability of crossover entered is : %e", pcross_bin);
printf("\n Entered value of probability of crossover of binary variables is out of bounds, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
if (std::getline(inputFStream, line))
{
pmut_bin = stod(line);
if (pmut_bin < 0.0 || pmut_bin > 1.0)
{
printf("\n Probability of mutation entered is : %e", pmut_bin);
printf("\n Entered value of probability of mutation of binary variables is out of bounds, hence exiting \n");
abortNSGA();
}
}
else
{
printf("\n File Ended Prematurely \n");
abortNSGA();
}
}
if (std::getline(inputFStream, line))
{
std::vector<std::string> split = splitText(line, " ");
if (split.size() >= 2)
{
if (split[0] == "-t")
{
int problemIndex = stoi(split[1]);
setProblemDefinitionFromIndex(problemIndex);
}
else if (split[0] == "-f" && split.size() > 2)
{
std::string tempSharedLibraryPath = split[1];
if (fileExists(tempSharedLibraryPath))
{
std::string initializationFunction ="";
std::string functionName = split[2];
if(split.size() > 3)
{
initializationFunction = split[3];
}
setProblemDefinitionFromLibrary(tempSharedLibraryPath, functionName, initializationFunction, fhandle);
}
else
{
printf("Could not open inputfile. Terminating.\n");
abortNSGA();
}
}
}
}
problemOptions.clear();
while (std::getline(inputFStream, line))
{
problemOptions.push_back(line);
}
if(problemDefinitionInitialize)
{
problemDefinitionInitialize(procRank, problemOptions);
}
inputFStream.close();
}
else
{
printf("Could not open inputfile. Terminating.\n");
abortNSGA();
}
if (procRank == 0)
{
population *parent_pop;
population *child_pop;
population *mixed_pop;
std::string ext = fileExtension(inputfile);
std::string tempFile = inputfile;
replace(tempFile, ext, "_initial_pop.out");
FILE *fpt1 = fopen(tempFile.c_str(), "w");
tempFile = inputfile;
replace(tempFile, ext, "_final_pop.out");
FILE *fpt2 = fopen(tempFile.c_str(), "w");
tempFile = inputfile;
replace(tempFile, ext, "_best_pop.out");
FILE *fpt3 = fopen(tempFile.c_str(), "w");
FILE *fpt4 = NULL;
if (printAllIndividuals)
{
tempFile = inputfile;
replace(tempFile, ext, "_all_pop.out");
fpt4 = fopen(tempFile.c_str(), "w");
printf("Will print all individuals \n");
}
else
{
printf("Will not print all individuals \n");
}
tempFile = inputfile;
replace(tempFile, ext, "_params.out");
FILE *fpt5 = fopen(tempFile.c_str(), "w");
fprintf(fpt1, "# This file contains the data of initial population\n");
fprintf(fpt2, "# This file contains the data of final population\n");
fprintf(fpt3, "# This file contains the data of final feasible population (if found)\n");
if (printAllIndividuals)
{
fprintf(fpt4, "# This file contains the data of all generations\n");
}
fprintf(fpt5, "# This file contains information about inputs as read by the program\n");
printf("\nInput data successfully read, now performing initialization\n");
fprintf(fpt5, "\n Population size = %d", popsize);
fprintf(fpt5, "\n Number of generations = %d", ngen);
fprintf(fpt5, "\n Number of objective functions = %d", nobj);
fprintf(fpt5, "\n Number of constraints = %d", ncon);
fprintf(fpt5, "\n Number of real variables = %d", nreal);
if (nreal > 0)
{
for (int i = 0; i < nreal; i++)
{
fprintf(fpt5, "\n Lower limit of real variable %d = %e", i + 1, min_realvar[i]);
fprintf(fpt5, "\n Upper limit of real variable %d = %e", i + 1, max_realvar[i]);
}
fprintf(fpt5, "\n Probability of crossover of real variable = %e", pcross_real);
fprintf(fpt5, "\n Probability of mutation of real variable = %e", pmut_real);
fprintf(fpt5, "\n Distribution index for crossover = %e", eta_c);
fprintf(fpt5, "\n Distribution index for mutation = %e", eta_m);
}
fprintf(fpt5, "\n Number of binary variables = %d", nbin);
if (nbin > 0)
{
for (int i = 0; i < nbin; i++)
{
fprintf(fpt5, "\n Number of bits for binary variable %d = %d", i + 1, nbits[i]);
fprintf(fpt5, "\n Lower limit of binary variable %d = %e", i + 1, min_binvar[i]);
fprintf(fpt5, "\n Upper limit of binary variable %d = %e", i + 1, max_binvar[i]);
}
fprintf(fpt5, "\n Probability of crossover of binary variable = %e", pcross_bin);
fprintf(fpt5, "\n Probability of mutation of binary variable = %e", pmut_bin);
}
fprintf(fpt5, "\n Seed for random number generator = %e", seed);
bitlength = 0;
fprintf(fpt1, "# of objectives = %d, # of constraints = %d, # of real_var = %d, # of bits of bin_var = %d, constr_violation, rank, crowding_distance\n", nobj, ncon, nreal, bitlength);
fprintf(fpt2, "# of objectives = %d, # of constraints = %d, # of real_var = %d, # of bits of bin_var = %d, constr_violation, rank, crowding_distance\n", nobj, ncon, nreal, bitlength);
fprintf(fpt3, "# of objectives = %d, # of constraints = %d, # of real_var = %d, # of bits of bin_var = %d, constr_violation, rank, crowding_distance\n", nobj, ncon, nreal, bitlength);
if (printAllIndividuals)
{
fprintf(fpt4, "# of objectives = %d, # of constraints = %d, # of real_var = %d, # of bits of bin_var = %d, constr_violation, rank, crowding_distance\n", nobj, ncon, nreal, bitlength);
}
nbinmut = 0;
nrealmut = 0;
nbincross = 0;
nrealcross = 0;
parent_pop = (population *)malloc(sizeof(population));
child_pop = (population *)malloc(sizeof(population));
mixed_pop = (population *)malloc(sizeof(population));
allocate_memory_pop(parent_pop, popsize);
allocate_memory_pop(child_pop, popsize);
allocate_memory_pop(mixed_pop, 2 * popsize);
randomize();
initialize_pop(parent_pop);
printf("\nInitialization done, now computing first generation\n");
decode_pop(parent_pop);
evaluate_pop(parent_pop);
assign_rank_and_crowding_distance(parent_pop);
report_pop(parent_pop, fpt1);
if(printAllIndividuals)
{
fprintf(fpt4, "# gen = 1\n");
report_pop(parent_pop, fpt4);
}
printf("\n gen = 1 \n");
fflush(stdout);
fflush(fpt1);
fflush(fpt2);
fflush(fpt3);
if (printAllIndividuals)
{
fflush(fpt4);
}
fflush(fpt5);
for (int i = 2; i <= ngen; i++)
{
currentGen = i;
selection(parent_pop, child_pop);
mutation_pop(child_pop);
decode_pop(child_pop);
evaluate_pop(child_pop);
merge(parent_pop, child_pop, mixed_pop);
fill_nondominated_sort(mixed_pop, parent_pop);
/* Comment following three lines if information for all
generations is not desired, it will speed up the execution */
if (printAllIndividuals)
{
fprintf(fpt4, "# gen = %d\n", i);
report_pop(parent_pop, fpt4);
fflush(fpt4);
}
printf("\n gen = %d\n", i);
}
printf("\n Generations finished, now reporting solutions\n");
report_pop(parent_pop, fpt2);
report_feasible(parent_pop, fpt3);
if (nreal > 0)
{
fprintf(fpt5, "\n Number of crossover of real variable = %d", nrealcross);
fprintf(fpt5, "\n Number of mutation of real variable = %d", nrealmut);
}
if (nbin > 0)
{
fprintf(fpt5, "\n Number of crossover of binary variable = %d", nbincross);
fprintf(fpt5, "\n Number of mutation of binary variable = %d", nbinmut);
}
fflush(stdout);
fflush(fpt1);
fflush(fpt2);
fflush(fpt3);
if (printAllIndividuals)
{
fflush(fpt4);
}
fflush(fpt5);
fclose(fpt1);
fclose(fpt2);
fclose(fpt3);
if (printAllIndividuals)
fclose(fpt4);
fclose(fpt5);
if (nbin > 0)
{
for (int i = 0; i < nbin; i++)
{
bitlength += nbits[i];
}
}
if (nreal > 0)
{
free(min_realvar); min_realvar = NULL;
free(max_realvar); max_realvar = NULL;
}
if (nbin > 0)
{
free(min_binvar); min_binvar = NULL;
free(max_binvar); max_binvar = NULL;
free(nbits); nbits = NULL;
}
deallocate_memory_pop(parent_pop, popsize);
deallocate_memory_pop(child_pop, popsize);
deallocate_memory_pop(mixed_pop, 2 * popsize);
free(parent_pop); parent_pop = NULL;
free(child_pop); child_pop = NULL;
free(mixed_pop); mixed_pop = NULL;
}
#ifdef USE_MPI
else
{
MPI_Status status;
int result = 0;
while ((result = MPI_Probe(0, MPI_ANY_TAG, MPI_COMM_WORLD, &status)) == MPI_SUCCESS && status.MPI_TAG != DIE_TAG)
{
int dataSize = 0;
int countResult = MPI_Get_count(&status, MPI_DOUBLE, &dataSize);
if(countResult == MPI_SUCCESS && dataSize > 0)
{
double *data = new double[dataSize];
result = MPI_Recv(data, dataSize, MPI_DOUBLE, status.MPI_SOURCE, MPI_ANY_TAG, MPI_COMM_WORLD, &status);
mpi_recieve_inds_from_master(data, dataSize);
delete[] data;
}
}
switch (result)
{
case MPI_ERR_COMM:
{
printf("Invalid communicator. A common error is to use a null communicator in a call (not even allowed in MPI_Comm_rank).\n");
abortNSGA();
}
break;
case MPI_ERR_TAG:
{
printf("Invalid tag argument. Tags must be non-negative; tags in a receive (MPI_Recv, MPI_Irecv, MPI_Sendrecv, etc.) may also be MPI_ANY_TAG. The largest tag value is available through the the attribute MPI_TAG_UB.\n");
abortNSGA();
}
break;
case MPI_ERR_RANK:
{
printf("Invalid source or destination rank. Ranks must be between zero and the size of the communicator minus one; ranks in a receive (MPI_Recv, MPI_Irecv, MPI_Sendrecv, etc.) may also be MPI_ANY_SOURCE.\n");
abortNSGA();
}
break;
}
}
#endif
if (fhandle)
{
closeLibrary(fhandle);
}
#ifdef USE_MPI
if (procRank == 0 && mpiProcessors > 1)