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Issues list

DlibOptimizer -- don't hardcode solver_epsilon optimization Related to optimization process
#1492 opened Oct 17, 2024 by dweindl
@PaulJonasJost
1
SacessOptimizer - support for recording full history enhancement New feature or request optimization Related to optimization process
#1488 opened Oct 16, 2024 by dweindl
Support sensi_orders in gradient checks bug Something isn't working
#1487 opened Oct 13, 2024 by dilpath
1
sphinx-build failures TypeError: can only concatenate str (not "_StrPath") to str documentation fixed but not released
#1482 opened Oct 8, 2024 by dweindl
@dweindl
1
Add gradient check methods to notebooks documentation enhancement New feature or request
#1481 opened Oct 4, 2024 by dilpath
Reduce computation and non-deterministic behaviour in evidence and sampling tests
#1475 opened Sep 30, 2024 by dilpath
Potential Bug in Visualization in case of only inadmissable values question Further information is requested
#1471 opened Sep 19, 2024 by PaulJonasJost
1
PetabImporter.create_edatas creates incomplete edata objects. AMICI PEtab
#1466 opened Sep 16, 2024 by FFroehlich
1
Using SacessOptimizer on objectives with parameter priors leads to pickle error bug Something isn't working
#1465 opened Sep 16, 2024 by stephanmg
1
@dweindl
2
petab.create_objective with custom edatas is broken
#1463 opened Sep 16, 2024 by FFroehlich
Frequent failures in model_evidence_and_bayes_factors.ipynb documentation fixed but not released
#1460 opened Sep 16, 2024 by dweindl
@PaulJonasJost
SacessOptimizer - expose more hyperparameters enhancement New feature or request fixed but not released optimization Related to optimization process
#1458 opened Sep 13, 2024 by dweindl
1
@dweindl
Move some things out of the Main Package question Further information is requested
#1452 opened Sep 4, 2024 by PaulJonasJost
@PaulJonasJost
3
Publication using pyPESTO: Multimodal Parameter Inference for a Canonical Motor Microcircuit Controlling Rat Hindlimb Motion Citation Issue to add Citation using pyPESTO to the bib
#1450 opened Aug 30, 2024 by FFroehlich
1
@dweindl
2
How to set fill_fixed_parameters=True for petab parameter mappings?
#1448 opened Aug 15, 2024 by FFroehlich
4
objective.FD does not inherit the PrePostProcessor bug Something isn't working fixed but not released
#1445 opened Aug 9, 2024 by PaulJonasJost
@PaulJonasJost
Roadrunner does not correctly handle estimated noise parameters bug Something isn't working
#1441 opened Aug 1, 2024 by PaulJonasJost
@PaulJonasJost
1
Using PyPesto with jax question Further information is requested
#1428 opened Jul 11, 2024 by MaAl13
11
KeyError for parameter with amici prefix AMICI bug Something isn't working
#1418 opened Jun 18, 2024 by matthiaskoenig
@dweindl
2
AmiciObjective: For sensi_orders>0, check that sensitivities wrt all relevant parameters are computed AMICI
#1414 opened Jun 13, 2024 by dweindl
1
@dweindl
Aggregated Objective does not return expected outputs using return_dict AMICI bug Something isn't working
#1410 opened Jun 7, 2024 by arrjon
7
pyjulia is no longer maintained Julia
#1397 opened May 7, 2024 by m-philipps
@m-philipps
Check pypesto/sample/geweke_test.py calculate_zscore/spectrum0/spectrum sampling Related to sampling
#1392 opened May 5, 2024 by dweindl
Handling of simulation failures in AmiciPredictor AMICI ensembles Related to parameter ensembles
#1359 opened Apr 4, 2024 by dweindl
General Discussion regarding Ensemble ensembles Related to parameter ensembles help wanted Extra attention is needed question Further information is requested
#1358 opened Apr 4, 2024 by PaulJonasJost
7
ProTip! Exclude everything labeled bug with -label:bug.