Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Need QC to determine whether TSV filler conforms to pattern var range #96

Open
matentzn opened this issue Jan 22, 2019 · 2 comments
Open

Need QC to determine whether TSV filler conforms to pattern var range #96

matentzn opened this issue Jan 22, 2019 · 2 comments

Comments

@matentzn
Copy link

For example, XPO is compiled using only DOSDP patterns (no manual curation), which adds up to 3112 phenotypes. If I run dosdp-query against this, I get 2969 patterns generated (covering all five uPheno patterns). Does any one have an idea what could cause this? @balhoff
@matentzn
Copy link
Author

matentzn commented Feb 8, 2019

Okay the reason is that not all entities in pattern actually conform to the range specified for the filler variable.. We need QC that checks whether a def confomrs to the specified range.

@matentzn matentzn changed the title Dosdp query does not recognise all patterns compiled with DOSDP generate Need QC to determine whether TSV filler conforms to pattern var range Feb 8, 2019
@matentzn
Copy link
Author

This is now top of my wishlist; however, I would like to be able to compile a patterns even if the filler range restrictions are violated; just with a clear error message.

@balhoff balhoff mentioned this issue Dec 2, 2021
Closed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@matentzn