Implement WsiAnnotations in C++ #1126
Workflow file for this run
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| name: tox | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| env: | |
| CODECOV_CI: true | |
| steps: | |
| - name: Install build dependencies | |
| run: | | |
| sudo apt update | |
| sudo apt install -y meson libgl1-mesa-glx libcairo2-dev libgdk-pixbuf2.0-dev libglib2.0-dev libjpeg-dev libpng-dev libtiff5-dev libxml2-dev libopenjp2-7-dev libsqlite3-dev zlib1g-dev libzstd-dev | |
| sudo apt install -y libfftw3-dev libexpat1-dev libgsf-1-dev liborc-0.4-dev libtiff5-dev ninja-build | |
| - name: Build and install OpenSlide | |
| run: | | |
| git clone https:/openslide/openslide.git | |
| cd openslide | |
| meson setup builddir | |
| meson compile -C builddir | |
| sudo meson install -C builddir | |
| cd .. | |
| - name: Build and install libvips | |
| run: | | |
| git clone https:/libvips/libvips.git | |
| cd libvips | |
| meson setup builddir --prefix=/usr/local | |
| meson compile -C builddir | |
| sudo meson install -C builddir | |
| sudo ldconfig | |
| cd .. | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Clean up any existing installations | |
| run: | | |
| sudo rm -rf /usr/local/lib/python3.10/site-packages/dlup* | |
| sudo rm -rf /opt/hostedtoolcache/Python/3.10.14/arm64/lib/python3.10/site-packages/dlup* | |
| sudo rm -rf /opt/hostedtoolcache/Python/3.10.14/arm64/lib/python3.10/site-packages/_dlup_editable_loader.py | |
| sudo rm -rf /opt/hostedtoolcache/Python/3.10.14/arm64/lib/python3.10/site-packages/easy-install.pth | |
| sudo rm -rf dlup/build | |
| sudo rm -rf /tmp/* | |
| - name: Install environment | |
| run: | | |
| python -m pip install --upgrade pip | |
| python -m pip install ninja meson meson-python>=0.15.0 numpy==1.26.4 Cython>=0.29 spin pybind11 | |
| python -m pip install tifffile>=2024.7.2 pyvips>=2.2.3 tqdm>=2.66.4 pillow>=10.3.0 openslide-python>=1.3.1 | |
| python -m pip install opencv-python-headless>=4.9.0.80 shapely>=2.0.4 pybind11>=2.8.0 pydantic coverage pytest psutil darwin-py pytest-mock | |
| echo "Python executable: $(which python)" | |
| echo "Python version: $(python --version)" | |
| echo "Current directory: $PWD" | |
| - name: Run tox | |
| run: | | |
| python -m pip install tox | |
| tox |