Installation / Running

• It's in /mnt/storage/karr/projects/clontogene/blah5
• Install pip install -r requirements.txt
• python -m spacy download en`

Use

• curl -F file='@data/6234315.json' http://0.0.0.0:61455/ > out.json
• PubAnnotation style: curl -d text="example text" https://pub.cl.uzh.ch/projects/ontogene/blah5/

Querying OGER

• curl -d "@filename" https://pub.cl.uzh.ch/projects/ontogene/oger/upload/txt/pubanno_json

To Do

• Test integration with PubAnnotation
• Automatically get OGER annos