[xdoctest] reformat example code with google style in `paddle/jit` #55645

SigureMo · 2023-07-24T06:42:46Z

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PR changes

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Description

修改如下文件的示例代码为新的格式，并通过 xdoctest 检查：

python/paddle/jit/api.py
python/paddle/jit/dy2static/convert_call_func.py
python/paddle/jit/dy2static/logging_utils.py
python/paddle/jit/dy2static/program_translator.py
python/paddle/jit/translated_layer.py

预览：

@sunzhongkai588 @SigureMo @megemini

[xdoctest] 分批次修改已有代码的示例 #55629

PCard-66962

SigureMo · 2023-07-24T08:54:32Z

有一些交互环境下无法获取源码的示例代码，比如一个非常简单的例子：

import inspect

def foo(): ...
inspect.getsource(foo)

在交互环境下是无法获取源码的，这样会报错，这种情况是要如何跳过呢？整段代码 # doctest: +SKIP 嘛？@megemini

SigureMo · 2023-07-24T09:05:45Z

@megemini 另外我发现一个问题

非连续的 ... 直接被吞掉了，导致最后报找不到 __len__ 的错误

这是 xdoctest 的已知问题嘛？所以我需要在空行上加上 ... 是嘛？

megemini · 2023-07-24T10:26:26Z

在交互环境下是无法获取源码的，这样会报错，这种情况是要如何跳过呢？整段代码 # doctest: +SKIP 嘛？

是的！如果无法执行的跳过就行！

如果同段代码后面有需要继续执行的，可以用 # doctest: -SKIP 去掉跳过指令～

megemini · 2023-07-24T11:14:02Z

这是 xdoctest 的已知问题嘛？所以我需要在空行上加上 ... 是嘛？

不连续的 ... 表示一段代码的结束，而代码的开始是 >>> ，所以会导致有空行的 ... 后半段被截掉～

可以手动加上 ... 或者把空行去掉～

我把 convert_doctest 改一下，把空行加上 ... 吧。

megemini · 2023-07-24T14:02:26Z

#55629 增加了本地验证的步骤，可以一并试一下～

SigureMo · 2023-07-24T15:42:02Z

#55629 增加了本地验证的步骤，可以一并试一下～

这个可以！不然与 CI 交互总归是不够及时

SigureMo · 2023-07-24T16:21:16Z

#55629 增加了本地验证的步骤，可以一并试一下～

不过奇怪的是，我本地跑一直报这个错误

      File "/Users/.../Projects/Paddle/python/paddle/fluid/__init__.py", line 36, in <module>
        from . import framework
    
      File "/Users/.../Projects/Paddle/python/paddle/fluid/framework.py", line 33, in <module>
        from .proto import framework_pb2, data_feed_pb2
    
    ModuleNotFoundError: No module named 'python.paddle.fluid.proto'
    
    
    During handling of the above exception, another exception occurred:
    
    
    Traceback (most recent call last):
    
      File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 749, in run
        self._import_module()
    
      File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 564, in _import_module
        self.module = utils.import_module_from_path(self.modpath, index=-1)
    
      File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/utils/util_import.py", line 355, in import_module_from_path
        module = _custom_import_modpath(modpath, index=index)
    
      File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/utils/util_import.py", line 200, in _custom_import_modpath
        raise RuntimeError('\n'.join(msg_parts))
    
    RuntimeError: ERROR: Failed to import modname=python.paddle.jit.api with modpath=python/paddle/jit/api.py
    Caused by: ModuleNotFoundError("No module named 'python.paddle.fluid.proto'")

看样子像是 python/paddle/fluid/framework.py 里用了相对引用了自动生成的 proto，在源码里找不到

复现方式：

xdoctest --global-exec "import paddle\npaddle.device.set_device('cpu')" python/paddle/jit/api.py

megemini · 2023-07-25T09:29:46Z

xdoctest --global-exec "import paddle\npaddle.device.set_device('cpu')" python/paddle/jit/api.py

如果直接测试项目中的文件，就会出这种错误！

不能用 xdoctest 直接测试 paddle 整个项目也是这个原因～他对于 module 的查找跟咱们不一样～

所以我在描述里面也建议了，把 docstring 封装到另外一个空文件空函数里面去测试就行～

SigureMo · 2023-07-25T09:43:36Z

所以我在描述里面也建议了，把 docstring 封装到另外一个空文件空函数里面去测试就行～

好的，我稍后试一下，话说 xdoctest 是否有参数 prevent 这个行为呢？

megemini · 2023-07-25T10:28:32Z

好的，我稍后试一下，话说 xdoctest 是否有参数 prevent 这个行为呢？

应该不行～命令行执行 xdoctest 就会去找 module～

不过，用之前做的 Xdoctester 可以：

In [31]: from sampcd_processor_xdoctest import Xdoctester

In [32]: dt = Xdoctester()

In [33]: with open('/paddle/python/paddle/distribution/bernoulli.py') as f:
    ...:     codes = ''.join(f.readlines())
    ...:     

In [34]: codes = dt.convert_directive(codes)

In [35]: dt.run('bernoulli', codes)
====== <exec> ======
* DOCTEST : <modpath?>::bernoulli:0, line 75 <- wrt source file
Tensor(shape=[], dtype=float32, place=Place(cpu), stop_gradient=True,
       0.30000001)
Tensor(shape=[], dtype=float32, place=Place(cpu), stop_gradient=True,
       0.21000001)
Tensor(shape=[], dtype=float32, place=Place(cpu), stop_gradient=True,
       0.61086434)
[100, 1]
[100]
[100, 2]
[100, 2, 2]
[100, 1]
[100]
[100, 2]
[100, 2, 2]
DOCTEST RESULT
* SUCCESS: <modpath?>::bernoulli:0
====== </exec> ======
Out[35]: [TestResult(name='<DocTest(<modname?> bernoulli:0 ln 75)>', nocode=False, passed=True, skipped=False, failed=False, time=0.004740715026855469, test_msg=None, extra_info=None)]

如果直接全文检查的话，会有一个问题，因为他把整个 python 文件当作 docstring，所以，如果有一个地方有 # doctest: +SKIP，而后面又没有 # doctest: -SKIP，就会导致这部分代码没法检查～

所以，如果没有 skip 之类的，上面的方法应该可以，或者把上面的 codes 改为每一段 docstring，也行～

SigureMo · 2023-07-25T18:19:08Z

这个 PR 把 jit 下的都改了，可惜的是，因为 AST 动转静需要通过 inspect.getsource 获取源码，而 xdoctest 执行环境同 REPL 是无法获取源码的，因此相关 case 都 skip 了

SigureMo · 2023-07-26T01:39:56Z

@megemini 我发现有一些空行会让 xdoctest 报错，比如

# test.py
def foo():
    """
    >>> import numpy as np
    >>> import paddle
    >>> from paddle import nn
    >>> import paddle.optimizer as opt

    >>> BATCH_SIZE = 16
    >>> BATCH_NUM = 4
    >>> EPOCH_NUM = 4

    >>> IMAGE_SIZE = 784
    >>> CLASS_NUM = 10

    >>> # define a random dataset
    >>> class RandomDataset(paddle.io.Dataset):
    ...     def __init__(self, num_samples):
    ...         self.num_samples = num_samples
    ...
    ...     def __getitem__(self, idx):
    ...         image = np.random.random([IMAGE_SIZE]).astype('float32')
    ...         label = np.random.randint(0, CLASS_NUM - 1, (1, )).astype('int64')
    ...         return image, label
    ...
    ...     def __len__(self):
    ...         return self.num_samples
    ...
    >>> class LinearNet(nn.Layer):
    ...     def __init__(self):
    ...         super().__init__()
    ...         self._linear = nn.Linear(IMAGE_SIZE, CLASS_NUM)
    ...
    ...     @paddle.jit.to_static
    ...     def forward(self, x):
    ...         return self._linear(x)
    ...
    >>> def train(layer, loader, loss_fn, opt):
    ...     for epoch_id in range(EPOCH_NUM):
    ...         for batch_id, (image, label) in enumerate(loader()):
    ...             out = layer(image)
    ...             loss = loss_fn(out, label)
    ...             loss.backward()
    ...             opt.step()
    ...             opt.clear_grad()
    ...             print("Epoch {} batch {}: loss = {}".format(
    ...                 epoch_id, batch_id, np.mean(loss.numpy())))
    ...
    >>> # create network
    >>> layer = LinearNet()
    >>> loss_fn = nn.CrossEntropyLoss()
    >>> adam = opt.Adam(learning_rate=0.001, parameters=layer.parameters())

    >>> # create data loader
    >>> dataset = RandomDataset(BATCH_NUM * BATCH_SIZE)
    >>> loader = paddle.io.DataLoader(dataset,
    ...     batch_size=BATCH_SIZE,
    ...     shuffle=True,
    ...     drop_last=True,
    ...     num_workers=2)
    ...
    >>> # train
    >>> train(layer, loader, loss_fn, adam)

    >>> # save
    >>> model_path = "linear.example.model"
    >>> paddle.jit.save(layer, model_path)

    >>> # load
    >>> translated_layer = paddle.jit.load(model_path)

    >>> # get program
    >>> program = translated_layer.program()
    """

xdoctest --global-exec "import paddle\npaddle.device.set_device('cpu')" test.py

会报

CommandLine:
    python -m xdoctest test.py foo:0
Traceback (most recent call last):
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/bin/xdoctest", line 8, in <module>
    sys.exit(main())
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/__main__.py", line 167, in main
    run_summary = xdoctest.doctest_module(modname, argv=[], style=style,
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/runner.py", line 322, in doctest_module
    run_summary = _run_examples(enabled_examples, verbose, config,
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/runner.py", line 644, in _run_examples
    summary = example.run(verbose=verbose, on_error=on_error)
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 1053, in run
    summary = self._post_run(verbose)
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 1488, in _post_run
    lines = self.repr_failure()
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 1418, in repr_failure
    new_tblines = _alter_traceback_linenos(self, tblines)
  File "/opt/homebrew/Caskroom/mambaforge/base/envs/paddle/lib/python3.10/site-packages/xdoctest/doctest_example.py", line 1408, in _alter_traceback_linenos
    failed_ctx = self.failed_part.orig_lines[tb_lineno - 1]
IndexError: list index out of range

此时删掉 # create data loader 上面的空行就没问题了（只是没有这个问题，但示例代码还会报错），但很多情况下好像确实加空行比较合适，PyTorch 里也有很多这样的情况，这个看起来是不是 xdoctest 的一个 bug？

megemini · 2023-07-26T04:44:35Z

这个看起来是不是 xdoctest 的一个 bug？

应该是～

我看了一下 xdoctest，上面的流程：

运行示例 <- 咱们的
抛出异常，raise OSError('could not get source code') <- 咱们的
抛出异常 IndexError: list index out of range，是 xdoctest 的 repr_failure 显示异常 <- xdoctest 的

其中前两步如果出问题，是咱们的问题，repr_failure 是 xdoctest 用于输出显示异常的方法。

他用 failed_tb_lineno 来记录异常的行数，然后就是 repr_failure 一长串的加来加去～

具体问题等有时间再定位吧，不过应该可以确认是 xdoctest 的 bug ... ... 😮‍💨

SigureMo · 2023-07-26T06:25:18Z

@megemini @sunzhongkai588 这个 PR 可以来 review 一下了～ CI 只需要看 PR-CI-Static-Check、PR-CI-APPROVAL 其他的不出意外不会不过的

megemini · 2023-07-26T07:27:21Z

除了上面 review 的问题之外，从 PR-CI-Static-Check 的日志来看，以下文件没有抽取到接口：

convert_call_func.py
program_translator.py
api.py :: TracedLayer

不过，xdoctest 引入的时候，接口文档抽取之前的过程都是继承原来 sampcd_processor.py 的，这里是一直这样处理的吗？

2023-07-26 13:52:29 API check -- Example Code
2023-07-26 13:52:29 sample_test running under python 3.7.0
2023-07-26 13:52:31 [2023-07-26 05:52:31,307] [    INFO] dygraph_sharding_optimizer.py:27 - g_shard_use_reduce 0
2023-07-26 13:52:31 [2023-07-26 05:52:31,308] [    INFO] dygraph_sharding_optimizer.py:29 - g_shard_norm_align_dp 1
2023-07-26 13:52:31 [2023-07-26 05:52:31,308] [    INFO] hybrid_parallel_optimizer.py:43 - g_shard_norm_align_dp 1
2023-07-26 13:52:31 [2023-07-26 05:52:31,315] [    INFO] pipeline_parallel.py:48 - g_shard_use_reduce 0
2023-07-26 13:52:31 paddle.jit.TranslatedLayer in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.TranslatedLayer.program in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.enable_to_static in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.ignore_module in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.load in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.not_to_static in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.save in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.set_code_level in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.set_verbosity in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.to_static in dev is *******, different from pr's *******
2023-07-26 13:52:31 paddle.jit.TranslatedLayer' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.TranslatedLayer.program' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.enable_to_static' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.ignore_module' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.load' code block (name:code-example1, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.load' code block (name:code-example2, id:2) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.not_to_static' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.save' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.set_code_level' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.set_verbosity' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 paddle.jit.to_static' code block (name:None, id:1) is wrapped by PS1(>>> ), which will be tested by xdoctest.
2023-07-26 13:52:31 -----API_PR.spec is the same as API_DEV.spec-----

另外，私有方法也没有提取，这个是 sampcd_processor.py 的抽取文档的方法，私有方法不对外，倒也不影响，只是挺别扭～

SigureMo · 2023-07-26T13:30:22Z

除了上面 review 的问题之外，从 PR-CI-Static-Check 的日志来看，以下文件没有抽取到接口：

上面 review 的问题是？是不是没有 submit review 还处于 pending 状态？

不过，xdoctest 引入的时候，接口文档抽取之前的过程都是继承原来 sampcd_processor.py 的，这里是一直这样处理的吗？

我之前看过 https:/PaddlePaddle/docs/blob/develop/docs/api/gen_doc.py 部分代码，其逻辑是将 __all__ 下的视为暴露的 API，比如 paddle.jit.__all__

Paddle/python/paddle/jit/__init__.py

Lines 26 to 36 in 669bcf5

 __all__ = [ # noqa 

 'save', 

 'load', 

 'to_static', 

 'ignore_module', 

 'TranslatedLayer', 

 'set_code_level', 

 'set_verbosity', 

 'not_to_static', 

 'enable_to_static', 

 ]

那么就会暴露 paddle.jit.save、paddle.jit.load…… 等等 API，其余 API 不会暴露，也不会显示在文档里

以下文件没有抽取到接口：

这些没抽取到接口的，是因为他们不是公开 API，这样看的话，示例代码的抽取和公开 API 的抽取逻辑是一样的，都是基于 __all__ 的，如果之前逻辑如此，那就没有问题

megemini · 2023-07-26T06:59:35Z

python/paddle/jit/api.py

+ >>> # create data loader
+ >>> dataset = RandomDataset(BATCH_NUM * BATCH_SIZE)
+ >>> loader = paddle.io.DataLoader(dataset,
+ >>> feed_list=[image, label],
+ >>> places=place,
+ >>> batch_size=BATCH_SIZE,
+ >>> shuffle=True,
+ >>> drop_last=True,
+ >>> return_list=False,
+ >>> num_workers=2)
+


这是用旧的 convert_doctest 版本生成的吧～

新版本已经改了～

整体 .. code-block:: python 缩进也对其了～

megemini · 2023-07-26T07:03:51Z

python/paddle/jit/api.py

+ ... self._linear = nn.Linear(IMAGE_SIZE, CLASS_NUM)
+
+ ... @paddle.jit.to_static


缺少 ...

megemini · 2023-07-26T07:05:26Z

python/paddle/jit/api.py

+ >>> adam = opt.Adam(learning_rate=0.001, parameters=fc.parameters())
+ >>> loader = paddle.io.DataLoader(dataset,
+ >>> places=place,
+ >>> batch_size=BATCH_SIZE,
+ >>> shuffle=True,
+ >>> drop_last=True,
+ >>> num_workers=2)
+ >>> for epoch_id in range(EPOCH_NUM):


megemini · 2023-07-26T07:11:59Z

python/paddle/jit/dy2static/program_translator.py

+ >>> print([i.name for i in inputs])
+ >>> # [u'generated_tensor_0'] the feed input Tensor name representing x
+ >>> print([o.name for o in outputs])
+ >>> # [u'_generated_var_4'] the fetch output Tensor name representing x_v


这里的输出应该是什么？！我这边在 paddle 2.5 的 docker 直接运行报错了～

ProgramTranslator 是一个废弃 API，不会公开

megemini · 2023-07-27T11:16:31Z

lgtm ：）

sunzhongkai588

LGTM
就是请教一个问题，第一行是空行的，是不是都是( >>> # doctest: +SKIP)

SigureMo · 2023-07-28T09:49:07Z

就是请教一个问题，第一行是空行的，是不是都是( >>> # doctest: +SKIP)

emmm，话说 pytorch 这样的行也是只删除 # doctest: +SKIP 而不删除 >>> 嘛？看起来有点别扭 😂

SigureMo · 2023-07-28T09:57:12Z

https://pytorch.org/docs/stable/generated/torch.einsum.html?highlight=einsum#torch.einsum

看样子 torch 会把整行删掉，是怎么做到的捏？

megemini · 2023-07-28T09:59:30Z

就是请教一个问题，第一行是空行的，是不是都是( >>> # doctest: +SKIP)

是的 ... ...

emmm，话说 pytorch 这样的行也是只删除 # doctest: +SKIP 而不删除 >>> 嘛？看起来有点别扭 joy

pytorch 删掉了～

让官网的研发同学帮帮忙吧～：）

SigureMo · 2023-07-28T10:00:45Z

让官网的研发同学帮帮忙吧～：）

啊…… 再提需求感觉官网想打人了……

megemini · 2023-07-28T10:01:21Z

看样子 torch 会把整行删掉，是怎么做到的捏？

判断只有 >>> 删掉就行了吧～ python 的这种格式我感觉前端处理起来应该不麻烦～ 🫣

SigureMo · 2023-07-28T10:56:21Z

判断只有 >>> 删掉就行了吧～ python 的这种格式我感觉前端处理起来应该不麻烦～ 🫣

前端得到的是渲染后的 HTML 吧？让前端去删 DOM 我觉得不是很好的处理方式

SigureMo · 2023-07-28T11:08:57Z

我看了下 torch 的处理，看起来应该是这里：

https:/pytorch/pytorch/blob/4fe407ad7387763aacbf3f168659198acdaceb31/docs/source/conf.py#L545-L586

我们是否可以利用 autodoc-process-docstring 来将这一行去掉呢？

UPDATE：

我在本地搭的 sphinx 环境里测试是可以的：

source:

before:

after:

megemini · 2023-07-28T12:10:37Z

我在本地搭的 sphinx 环境里测试是可以的：

是不是修改

提个 PR 试试？

SigureMo · 2023-07-28T12:24:21Z

提个 PR 试试？

嗯嗯

megemini · 2023-07-28T14:50:03Z

PaddlePaddle/docs#6072

SigureMo added 3 commits July 24, 2023 14:39

[xdoctest] reformat example code for paddle.jit.api

77e0702

test=docs_preview

ed3ee3b

add some ... for decorator

a5d5b96

SigureMo force-pushed the xdoctest/jit-api branch from 22bed9f to a5d5b96 Compare July 24, 2023 07:01

SigureMo added 2 commits July 24, 2023 19:16

skip some example, test=docs_preview

6b08e73

add ..., test=docs_preview

e3dd878

SigureMo added 2 commits July 25, 2023 00:27

skip some test, test=docs_preview

b2a59de

more jit files, test=docs_preview

087ee87

SigureMo added 2 commits July 26, 2023 01:51

remove some empty lines, test=docs_preview

711c447

format program translator, test=docs_preview

893ec21

remove a blank line, test=docs_preview

6dc9596

skip translated layer.program, test=docs_preview

d10791d

SigureMo changed the title ~~[xdoctest] reformat example code for paddle.jit.api~~ [xdoctest] reformat example code for paddle/jit Jul 26, 2023

SigureMo changed the title ~~[xdoctest] reformat example code for paddle/jit~~ [xdoctest] reformat example code with google style in paddle/jit Jul 26, 2023

megemini reviewed Jul 27, 2023

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fix doc format, test=docs_preview

008ce6b

SigureMo mentioned this pull request Jul 27, 2023

[xdoctest] 分批次修改已有代码的示例 #55629

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sunzhongkai588 approved these changes Jul 28, 2023

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luotao1 merged commit 0c3b369 into PaddlePaddle:develop Jul 31, 2023

SigureMo deleted the xdoctest/jit-api branch July 31, 2023 06:45

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[xdoctest] reformat example code with google style in `paddle/jit` #55645

[xdoctest] reformat example code with google style in `paddle/jit` #55645

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		... self._linear = nn.Linear(IMAGE_SIZE, CLASS_NUM)

		... @paddle.jit.to_static

[xdoctest] reformat example code with google style in paddle/jit #55645

[xdoctest] reformat example code with google style in paddle/jit #55645

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[xdoctest] reformat example code with google style in `paddle/jit` #55645

[xdoctest] reformat example code with google style in `paddle/jit` #55645

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