Merge branch 'develop' of https:/TissueImageAnalytics/tia…

…toolbox into issue-vahadane-warn

.github/workflows/python-package.yml

@@ -30,7 +30,7 @@ jobs:
  sudo apt update
  sudo apt-get install -y libopenslide-dev openslide-tools libopenjp2-7 libopenjp2-tools
  python -m pip install --upgrade pip
- python -m pip install ruff==0.6.5 pytest pytest-cov pytest-runner
+ python -m pip install ruff==0.7.0 pytest pytest-cov pytest-runner
  pip install -r requirements/requirements.txt
  - name: Cache tiatoolbox static assets
  uses: actions/cache@v3

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 ci:
  autofix_prs: true
- autoupdate_commit_msg: '[pre-commit.ci] pre-commit autoupdate'
- autoupdate_schedule: 'weekly'
+ autoupdate_commit_msg: ':technologist: pre-commit autoupdate'
+ autoupdate_schedule: 'monthly'
 repos:
  - repo: local
  hooks:
@@ -11,7 +11,7 @@ repos:
  files: tests/.*\btest_\w*.py
  require_serial: true
  language: system
- stages: [push]
+ stages: [pre-push]
  - id: notebook-markdown-format
  name: notebook markdown format
  entry: python pre-commit/notebook_markdown_format.py
@@ -23,15 +23,15 @@ repos:
  - mdformat-black
  - mdformat-myst
  - repo: https:/executablebooks/mdformat
- rev: 0.7.17
+ rev: 0.7.18
  hooks:
  - id: mdformat
  # Optionally add plugins
  additional_dependencies:
  - mdformat-gfm # GitHub flavoured markdown
  - mdformat-black # Black formatting for python verbatim blocks
  - repo: https:/pre-commit/pre-commit-hooks
- rev: v4.6.0
+ rev: v5.0.0
  hooks:
  - id: check-ast # Simply checks whether the files parse as valid Python.
  - id: fix-byte-order-marker # Removes utf-8 byte order marker.
@@ -60,7 +60,7 @@ repos:
  - id: rst-inline-touching-normal # Detect mistake of inline code touching normal text in rst.
  - repo: https:/astral-sh/ruff-pre-commit
  # Ruff version.
- rev: v0.6.5
+ rev: v0.7.0
  hooks:
  - id: ruff
  args: [--fix, --exit-non-zero-on-fix]

requirements/requirements_dev.txt

@@ -10,7 +10,7 @@ pytest>=7.2.0
 pytest-cov>=4.0.0
 pytest-runner>=6.0
 pytest-xdist[psutil]
-ruff==0.6.5 # This will be updated by pre-commit bot to latest version
+ruff==0.7.0 # This will be updated by pre-commit bot to latest version
 toml>=0.10.2
 twine>=4.0.1
 wheel>=0.37.1