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Probelm in deconvolution #30
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You can check |
Thanks for your fast reply. intersect(rownames(st_data),rownames(sc_data)) %>% length
[1] 9510
dim(st_data)
[1] 9817 7481
dim(sc_data)
[1] 26733 19311 Now, I try to use the intersection between sc_data and st_data to subset the two dataset. Best, |
When I use the intersection to fit the model. Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'rowSums': invalid character indexing |
Can you show the |
Thanks for your fast reply. |
The reason is that the inconsistent names of |
@biostat0903 The reason of error |
Dear author,
Our group hopes to use the Spatalk package. When we analyze the 10x Visium data, the function
dec_celltype
can not work.Our code:
Error:
Could you tell me the reason for the error? Thank you!
Best,
Sheng
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