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  • University of California at Davis

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  1. Preliminary-CpG-Data-Analysis Preliminary-CpG-Data-Analysis Public

    PacBio Jasmine pipeline, penalized regression, and DMR identification

    Shell

  2. RNAseq-for-SGenes RNAseq-for-SGenes Public

    Creation of a gene expression atlas in strawberry for the purpose of visualizing expression of susceptibility genes

    Shell 1 1

  3. NLR-Identification-and-Visualization NLR-Identification-and-Visualization Public

    Identification of nlr loci with NLR_Annotator, plus visualization and analyses

    R

  4. HRP-Pipeline HRP-Pipeline Public

    My documentation for running the full-length homology-based r gene prediction pipeline, complete with scripts. Fills in gaps of the official pipeline.

    Shell