Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Initial code review of changes for hg38 alt contigs #63

Open
wants to merge 20 commits into
base: dev
Choose a base branch
from
Open

Initial code review of changes for hg38 alt contigs #63

wants to merge 20 commits into from

Conversation

rnpandya
Copy link
Member

@rnpandya rnpandya commented Dec 9, 2015

You can generate test files with tests/alttestgen.py (test.fa, test_alts.txt, test.sam).

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/9/
Test FAILed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/10/
Test FAILed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/11/
Test FAILed.

@rnpandya
Compile on Linux
42717f9
@rnpandya
Merge branch 'master' into alts
ce53004 
Conflicts:
	SNAPLib/BaseAligner.cpp
	SNAPLib/Genome.h
@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/12/
Test FAILed.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/13/
Test PASSed.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/14/
Test PASSed.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/15/
Test PASSed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/16/
Test FAILed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/17/
Test FAILed.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/18/
Test PASSed.

@AmplabJenkins
Copy link

Test PASSed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/19/
Test PASSed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/20/
Test FAILed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/21/
Test FAILed.

@AmplabJenkins
Copy link

Test FAILed.
Refer to this link for build results (access rights to CI server needed):
https://amplab.cs.berkeley.edu/jenkins//job/snap-prb/22/
Test FAILed.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees

@bolosky bolosky

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
3 participants
@rnpandya @AmplabJenkins @bolosky