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--max-hsps
will now recompute a full-matrix Smith Waterman alignment with the ranges of the known HSPs masked in the target.--max-hsps
can now be used together with--ext full
.--iterate
option.--seed-cut
to set a complexity cutoff for indexed seeds.--freq-masking
to enable masking seeds based on frequency.--motif-masking (0,1)
to enable or disable motif masking.--masking seg
to enable SEG masking of target sequences (BLAST default) instead of tantan masking.full_sseq
output field to contain invalid information or to produce an error when using a BLAST database.--custom-matrix
option not to function correctly.This discussion was created from the release DIAMOND v2.0.12.
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