DIAMOND v0.9.2

• Fixed a compiler error.
• Improved performance for very small query files.

DIAMOND v0.9.1

• Fixed a performance issue.

DIAMOND v0.9.0

• improved performance
• improved support for alignments with long gaps
• removed SEG masking
• added low complexity masking using tantan
• changed license to AGPL

Note that this release requires database rebuilding.

DIAMOND v0.8.38

• Fixed unclear std::exception error messages.
• Fixed sequence titles in XML format to be compatible with blast2go.
• XML and pairwise format contain full length titles by default.

DIAMOND v0.8.37

• Added support for the staxids field to the tabular format, allowing to generate a list of NCBI taxonomy IDs associated with the aligned subject sequence. A description of how to use the option is contained in the manual.
• Fixed a bug that would cause an error message for empty DAA files.
• All scoring matrices use the respective default gap penalties from BLAST.
• Added check for SSSE3 instruction set.
• Added diamond-sse2 to the binary package.

DIAMOND v0.8.36

Fixed a compiler error.

DIAMOND v0.8.35

Fixed a compiler error on 32 bit systems.

DIAMOND v0.8.34

Fixed a compiler error.

DIAMOND v0.8.33

• modified option --no-self-hits to also require matching sequence titles for filtering of a self hit
• fixed a bug that could cause a crash in the joining output blocks stage

DIAMOND v0.8.32

• improved speed and sensitivity
• fixed an issue that could cause too high memory usage in certain cases