fix mongodb network

[fmigneault]

Overview

Move mongodb network to mongodb image directly and update phoenix/weaver images accordingly.

Changes

Non-breaking changes

• Apply mongodb network to mongodb image in order to allow phoenix to properly reference it.
• Remove mongodb definition from ./components/weaver since the extended mongodb network is already provided.

Breaking changes

• n/a

Related Issue / Discussion

• Resolves Feature/dac 300 weaver compose #114 (comment)

[crim-jenkins-bot]

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/757/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-mongodb-network
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-46.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/654/

NOTEBOOK TEST RESULTS

    
[2021-11-02T14:55:51.945Z] ============================= test session starts ==============================
[2021-11-02T14:55:51.945Z] platform linux -- Python 3.7.10, pytest-6.2.5, py-1.10.0, pluggy-0.13.1
[2021-11-02T14:55:51.945Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2021-11-02T14:55:51.945Z] plugins: anyio-3.3.0, dash-1.21.0, nbval-0.9.6, tornasync-0.6.0.post2
[2021-11-02T14:55:51.945Z] collected 221 items
[2021-11-02T14:55:51.945Z] 
[2021-11-02T14:56:00.541Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2021-11-02T14:56:22.751Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  8%]
[2021-11-02T14:56:33.704Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [ 10%]
[2021-11-02T14:56:43.107Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 14%]
[2021-11-02T14:56:45.890Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 19%]
[2021-11-02T14:57:03.999Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 19%]
[2021-11-02T14:57:03.999Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 19%]
[2021-11-02T14:57:09.560Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 23%]
[2021-11-02T14:57:16.647Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 25%]
[2021-11-02T15:00:50.215Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 32%]
[2021-11-02T15:01:49.302Z] ..............                                                           [ 38%]
[2021-11-02T15:02:01.884Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 40%]
[2021-11-02T15:02:04.220Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 43%]
[2021-11-02T15:02:27.925Z] .................                                                        [ 51%]
[2021-11-02T15:02:34.075Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 53%]
[2021-11-02T15:02:35.467Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 54%]
[2021-11-02T15:02:45.675Z] .......FF.                                                               [ 58%]
[2021-11-02T15:02:56.013Z] finch-master/docs/source/notebooks/dap_subset.ipynb ..........           [ 63%]
[2021-11-02T15:03:04.413Z] finch-master/docs/source/notebooks/finch-usage.ipynb ......              [ 66%]
[2021-11-02T15:03:50.867Z] finch-master/docs/source/notebooks/subset.ipynb ....................     [ 75%]
[2021-11-02T15:03:50.867Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 75%]
[2021-11-02T15:03:54.421Z] ......                                                                   [ 78%]
[2021-11-02T15:04:12.563Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 78%]
[2021-11-02T15:04:28.963Z] .............                                                            [ 84%]
[2021-11-02T15:04:38.980Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 85%]
[2021-11-02T15:05:22.430Z] ....s.                                                                   [ 87%]
[2021-11-02T15:05:34.923Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 88%]
[2021-11-02T15:05:43.492Z] ...                                                                      [ 89%]
[2021-11-02T15:06:10.110Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2021-11-02T15:06:39.153Z] ......                                                                   [ 92%]
[2021-11-02T15:06:45.297Z] notebooks/hummingbird.ipynb ............                                 [ 98%]
[2021-11-02T15:08:23.506Z] notebooks/stress-tests.ipynb ....                                        [100%]
[2021-11-02T15:08:23.507Z] 
[2021-11-02T15:08:23.507Z] =================================== FAILURES ===================================
    
  

[tlvu]

FYI weaver_example.ipynb is failing, is that normal?

[fmigneault]

@tlvu

FYI weaver_example.ipynb is failing, is that normal?

That's very weird because the collected notebook reach the end with all outputs with "success" contents.
I'll have to investigate why some asserts don't succeed...

[crim-jenkins-bot]

E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/758/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-mongodb-network
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS

    
</code>