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JOSS submission #67

Closed
wants to merge 47 commits into from
Closed

JOSS submission #67

wants to merge 47 commits into from

Commits on Aug 19, 2020

  1. begin joss submission

    adamltyson committed Aug 19, 2020
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  2. update references

    adamltyson committed Aug 19, 2020
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  3. update authors

    adamltyson committed Aug 19, 2020
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  4. add paragraph

    adamltyson committed Aug 19, 2020
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  5. minor changes

    adamltyson committed Aug 19, 2020
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  6. tentative edits

    FedeClaudi committed Aug 19, 2020
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  9. Update paper.bib

    vigji authored Aug 19, 2020
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  11. Update paper.md

    vigji authored Aug 19, 2020
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Commits on Aug 20, 2020

  1. pixel/voxel consistency

    adamltyson committed Aug 20, 2020
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  2. add DOIs

    adamltyson committed Aug 20, 2020
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  3. add DOIs

    adamltyson committed Aug 20, 2020
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  4. autodocs

    FedeClaudi committed Aug 20, 2020
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  6. Add author initials

    adamltyson committed Aug 20, 2020
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  8. updated summary

    FedeClaudi committed Aug 20, 2020
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Commits on Aug 24, 2020

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  2. more changes

    FedeClaudi committed Aug 24, 2020
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Commits on Aug 26, 2020

  1. Update paper.md

    vigji authored Aug 26, 2020
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  2. added Adam's suggestions

    FedeClaudi committed Aug 26, 2020
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Commits on Aug 27, 2020

  1. Changes by Ruben

    vigji committed Aug 27, 2020
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  2. restructured paragraph 2/3

    FedeClaudi committed Aug 27, 2020
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Commits on Sep 2, 2020

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  2. Removed some word repetition

    vigji committed Sep 2, 2020
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Commits on Sep 3, 2020

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  3. Squashed commit of the following:

    commit aa33d12
    Author: Luigi Petrucco <[email protected]>
    Date:   Thu Sep 3 13:49:11 2020 +0200
    
        Added method for shape in um
    
    commit e8c5d51
    Author: Luigi Petrucco <[email protected]>
    Date:   Wed Sep 2 22:33:21 2020 +0200
    
        Refactoring atlas generation for automatic update of atlases (#60)
    
        * Refactoring atlas generation for automatic update of atlases
    
        * Script for batch running all atlas scripts
    
        * bugfix for zebrafish atlas generation
    
        * Merging fixes
    
        * Lazy loading of secondary references
    
        * renamed to additional_references
    
        * bugfix
    
        * linting
    
        * Changed secondary to additional references
    
        * Fixed bug for custom atlas usage
    
        * StructuresDict repr is now the tree; added  structure id in the tag
    
        * Removed atlas_gen package, standard orientation is now asr
    
        * Fixed tests
    
        * Blacked for good
    
        * Testing for new class
    
        * Set back dev deps and markdown description for PyPi
    
    commit e061d8a
    Author: Luigi Petrucco <[email protected]>
    Date:   Sun Aug 30 12:09:47 2020 +0200
    
        Update README.md
    
    commit 96e3ade
    Author: Luigi Petrucco <[email protected]>
    Date:   Sun Aug 30 12:09:33 2020 +0200
    
        Update README.md
    
    commit c36fda5
    Author: Luigi Petrucco <[email protected]>
    Date:   Fri Aug 21 14:17:58 2020 +0200
    
        Bump version: 0.1.0 → 0.1.1
    
    commit 2c41b18
    Author: Luigi Petrucco <[email protected]>
    Date:   Fri Aug 21 14:17:30 2020 +0200
    
        Added changelog file and config for bumpversion (#71)
    
        * Added changelog file and config for bumpversion
    
        * Update CHANGELOG.md
    
        * Update __init__.py
    
    commit 6ea8195
    Author: Luigi Petrucco <[email protected]>
    Date:   Fri Aug 21 12:18:11 2020 +0200
    
        Fixed bug for hemisphere orientation (#70)
    vigji committed Sep 3, 2020
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  4. black fix

    vigji committed Sep 3, 2020
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  5. Merge branch 'master' into joss

    # Conflicts:
    #	bg_atlasapi/core.py
    #	bg_atlasapi/utils.py
    vigji committed Sep 3, 2020
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  6. Merge branch 'master' into joss

    # Conflicts:
    #	bg_atlasapi/utils.py
    vigji committed Sep 3, 2020
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Commits on Sep 13, 2020

  1. Update paper.bib

    FedeClaudi authored Sep 13, 2020
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Commits on Sep 25, 2020

  1. Squashed commit of the following:

    commit 2d8c121
    Author: Luigi Petrucco <[email protected]>
    Date:   Thu Sep 24 22:15:15 2020 +0200
    
        Test bugfix
    
    commit 31ae172
    Author: Federico Claudi <[email protected]>
    Date:   Sun Sep 13 20:23:04 2020 +0100
    
        Added # Contributing
    
    commit b2b2d9e
    Author: Oren Amsalem <[email protected]>
    Date:   Thu Sep 3 23:16:35 2020 +0300
    
        Version 0.2.0 does not work with bg-space 0.3.0 (#75)
    
        I don't know exactly what is the minimum version of bg-space so I set it to above 0.5.0.
        This is important for people who upgrade.
    vigji committed Sep 25, 2020
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Commits on Oct 1, 2020

  1. Merge remote-tracking branch 'origin/master' into joss

    # Conflicts:
    #	requirements.txt
    vigji committed Oct 1, 2020
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  2. acknowledges section

    vigji committed Oct 1, 2020
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Commits on Oct 2, 2020

  1. Update Acknowledgments

    adamltyson committed Oct 2, 2020
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  2. Updated affiliations

    vigji committed Oct 2, 2020
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  3. Update affiliations

    adamltyson committed Oct 2, 2020
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  4. update references

    adamltyson committed Oct 2, 2020
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Commits on Oct 3, 2020

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  2. removed additional pyinspect

    vigji committed Oct 3, 2020
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Commits on Oct 5, 2020

  1. fix typo

    adamltyson committed Oct 5, 2020
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