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@brentp brentp released this 31 Aug 18:51
· 22 commits to main since this release
v0.1.7
83e45f0

changes

  • add wiki page and more information about decomposing variants
  • clarify warning on non ACGT (#23)
  • better error messages on missing/bad zip file

Get Started

To get started, download the static linux binary here, then chmod +x and execute:

wget -O ~/bin/echtvar https:/brentp/echtvar/releases/download/v0.1.7/echtvar \
    && chmod +x ~/bin/echtvar \
    && ~/bin/echtvar -h

Experienced rust users can build with cargo
Please let me know any (non SIGILL) issues with the binary. This is my first time distributing rust binaries.

Annotation files

you can create your own annotation files using echtvar encode. We provide a pre-made file for hg38 whole genomes from gnomad v3.1.2. It can be retrieved with:

curl -L -o gnomad.v3.1.2.echtvar.v2.zip https://surfdrive.surf.nl/files/index.php/s/nJPDxM3b9C7hkM2/download

The 7.1GB gnomad.v3.1.2.echtvar.v2.zip file is created using this example json

a smaller (2.5GB) file with only popmax AF is available with:

curl -L -o gnomad.v3.1.2.echtvar.popmax.v2.zip  https://surfdrive.surf.nl/files/index.php/s/LddbAYQAYPqtYu6/download
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