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manifest: fix incorrect Annotator pointer aggregation
#3760 contained a bug which causes Annotator values to be incorrectly aggregated when pointer values should be overwritten. This is because the `vtyped` variable was not being modified due to being on the stack. This change fixes this and adds a unit test for `PickFileAggregator` to catch this issue in the future. #3759 should already not be affected by this due to the different way it handles aggregation.
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