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Update usage #4

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Update usage #4

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smsaladi
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@smsaladi smsaladi commented Oct 2, 2017

I was a bit confused by --gapignore Exclude first alphabet character from potential calculations and then realized it didn't correspond to what I had seen on the command line...
Anyhow, here is a suggestion to update the README and to fix a typo in the usage string

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