Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Remove Visible Human Project datasets #1026

Merged
merged 2 commits into from
Feb 11, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
33 changes: 0 additions & 33 deletions docs/source/datasets.rst
Original file line number Diff line number Diff line change
Expand Up @@ -115,39 +115,6 @@ MNI

.. autoclass:: BITE3

.. currentmodule:: torchio.datasets.visible_human


Visible Human Project
---------------------

The `Visible Human Project <https://www.nlm.nih.gov/research/visible/visible_human.html>`_
is an effort to create a detailed data set of cross-sectional photographs of
the human body, in order to facilitate anatomy visualization applications.
It is used as a tool for the progression of medical findings, in which these
findings link anatomy to its audiences.
A male and a female cadaver were cut into thin slices which were then
photographed and digitized (from `Wikipedia <https://en.wikipedia.org/wiki/Visible_Human_Project>`_).

:class:`VisibleMale`
~~~~~~~~~~~~~~~~~~~~

.. autoclass:: VisibleMale
.. plot::

import torchio as tio
tio.datasets.VisibleMale('Shoulder').plot()


:class:`VisibleFemale`
~~~~~~~~~~~~~~~~~~~~~~

.. autoclass:: VisibleFemale
.. plot::

import torchio as tio
tio.datasets.VisibleFemale('Shoulder').plot()


ITK-SNAP
--------
Expand Down
4 changes: 0 additions & 4 deletions src/torchio/datasets/__init__.py
Original file line number Diff line number Diff line change
Expand Up @@ -19,8 +19,6 @@
from .rsna_miccai import RSNAMICCAI
from .rsna_spine_fracture import RSNACervicalSpineFracture
from .slicer import Slicer
from .visible_human import VisibleFemale
from .visible_human import VisibleMale


__all__ = [
Expand All @@ -39,8 +37,6 @@
'Sheep',
'Pediatric',
'ICBM2009CNonlinearSymmetric',
'VisibleFemale',
'VisibleMale',
'OrganMNIST3D',
'NoduleMNIST3D',
'AdrenalMNIST3D',
Expand Down
77 changes: 0 additions & 77 deletions src/torchio/datasets/visible_human.py

This file was deleted.