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closes #503
This PR adds a commandline argument that emits the lengths of the SVs found on the reads into the VCF record that contains the resulting SV. The argument is suppressed (not showing in the "help") and is prefixed with
dev-
to indicate that it's a development/debugging option.The only change to the output is the (currently non-optional) addition of the
SVLENGTHS
header line in the VCF. However, I'm happy to make this also optional. otherwise, the algorithm and output are unchanged unless--dev-emit-sv-lengths
is provided on the command-line.