add support for identifiers uuid and guid

commonmeta/__init__.py

@@ -10,7 +10,7 @@
 """
 
 __title__ = "commonmeta-py"
-__version__ = "0.41"
+__version__ = "0.42"
 __author__ = "Martin Fenner"
 __license__ = "MIT"
 

commonmeta/constants.py

@@ -610,6 +610,8 @@ class Commonmeta(TypedDict):
  "URL": "url",
  "URN": "urn",
  "W3ID": "w3id",
+ "GUID": "guid",
+ "UUID": "uuid",
  "Other": "other",
 }
 

commonmeta/crossref_utils.py

@@ -363,10 +363,12 @@ def insert_funding_references(metadata, xml):
  )
  if funding_reference.get("funderIdentifier", None) is not None:
  funder_identifier = funding_reference.get("funderIdentifier", None)
- 
+
  # translate ROR to Crossref funder ID until Crossref supports ROR
- funder_identifier = ROR_TO_CROSSREF_FUNDER_ID_TRANSLATIONS.get(funder_identifier, funder_identifier)
-
+ funder_identifier = ROR_TO_CROSSREF_FUNDER_ID_TRANSLATIONS.get(
+ funder_identifier, funder_identifier
+ )
+
  etree.SubElement(
  funder_name,
  "assertion",
@@ -447,9 +449,7 @@ def insert_item_number(metadata, xml):
  if metadata.identifiers is None:
  return xml
  for identifier in metadata.identifiers:
- if identifier.get("identifier", None) is None:
- continue
- if identifier.get("identifierType", None) is not None:
+ if identifier.get("identifierType", None) == "UUID":
  # strip hyphen from UUIDs, as item_number can only be 32 characters long (UUIDv4 is 36 characters long)
  if identifier.get("identifierType", None) == "UUID":
  identifier["identifier"] = identifier.get("identifier", "").replace(
@@ -461,9 +461,7 @@ def insert_item_number(metadata, xml):
  {"item_number_type": identifier.get("identifierType", "").lower()},
  ).text = identifier.get("identifier", None)
  else:
- etree.SubElement(xml, "item_number").text = identifier.get(
- "identifier", None
- )
+ continue
  return xml
 
 

commonmeta/readers/json_feed_reader.py

@@ -127,7 +127,10 @@ def read_json_feed_item(data: Optional[dict], **kwargs) -> Commonmeta:
  "type": "IsPartOf",
  }
  )
- identifiers = [{"identifier": meta.get("id"), "identifierType": "UUID"}]
+ identifiers = [
+ {"identifier": meta.get("id"), "identifierType": "UUID"},
+ {"identifier": meta.get("guid"), "identifierType": "GUID"},
+ ]
  files = get_files(_id)
  state = "findable" if meta or read_options else "not_found"
 
@@ -237,13 +240,15 @@ def format_funding(urls: list) -> list:
  else:
  award_number = f.path.segments[-1]
  return [
- compact({
- "funderName": funder_name,
- "funderIdentifier": urls[0],
- "funderIdentifierType": "Crossref Funder ID",
- "awardUri": urls[1],
- "awardNumber": award_number,
- })
+ compact(
+ {
+ "funderName": funder_name,
+ "funderIdentifier": urls[0],
+ "funderIdentifierType": "Crossref Funder ID",
+ "awardUri": urls[1],
+ "awardNumber": award_number,
+ }
+ )
  ]
  # URL is ROR ID for funder.
  elif len(urls) == 2 and validate_ror(urls[0]):
@@ -254,7 +259,7 @@ def format_funding(urls: list) -> list:
  funder_name = ror.get("name", None)
  funder_identifier = urls[0]
  funder_identifier_type = "ROR"
- 
+
  f = furl(urls[1])
  # url is for NSF grant
  if f.args["awd_id"] is not None:
@@ -263,13 +268,15 @@ def format_funding(urls: list) -> list:
  award_number = f.path.segments[-1]
  return [
  compact(
- compact({
- "funderName": funder_name,
- "funderIdentifier": funder_identifier,
- "funderIdentifierType": funder_identifier_type,
- "awardUri": urls[1],
- "awardNumber": award_number,
- })
+ compact(
+ {
+ "funderName": funder_name,
+ "funderIdentifier": funder_identifier,
+ "funderIdentifierType": funder_identifier_type,
+ "awardUri": urls[1],
+ "awardNumber": award_number,
+ }
+ )
  )
  ]
 

commonmeta/resources/commonmeta_v0.15.json

@@ -274,6 +274,7 @@
  "URL",
  "URN",
  "UUID",
+ "GUID",
  "Other"
  ]
  }

commonmeta/writers/inveniordm_writer.py

@@ -16,7 +16,6 @@
  get_language,
  validate_orcid,
  id_from_url,
- issn_from_url,
  FOS_MAPPINGS,
 )
 
@@ -39,8 +38,9 @@ def write_inveniordm(metadata):
  ),
  }
  for i in wrap(metadata.identifiers)
- if i.get("id", None) != metadata.id
+ if i.get("identifier", None) != metadata.id
  ]
+ print(identifiers, metadata.id)
  references = [
  to_inveniordm_related_identifier(i)
  for i in wrap(metadata.references)

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name="commonmeta-py"
-version="0.41"
+version="0.42"
 repository = "https:/front-matter/commonmeta-py"
 homepage = "https://python.commonmeta.org"
 documentation = "https://python.commonmeta.org"

tests/cassettes/test-inveniordm_writer/test_from_json_feed.yaml

@@ -106,17 +106,17 @@ interactions:
  content-type:
  - application/json
  date:
- - Tue, 15 Oct 2024 17:33:08 GMT
+ - Thu, 17 Oct 2024 19:39:37 GMT
  fly-request-id:
- - 01JA8KV81EP0A5MF58PQ5ZWXHT-arn
+ - 01JADZW9AJ4PJZJ8Q3PYJWCB4R-arn
  ratelimit-limit:
  - '15'
  ratelimit-remaining:
  - '14'
  ratelimit-reset:
  - '3'
  server:
- - Fly/c3dfa7435 (2024-10-15)
+ - Fly/27d4b875a (2024-10-17)
  transfer-encoding:
  - chunked
  vary:

tests/cassettes/test-inveniordm_writer/test_from_json_feed_affiliations.yaml

@@ -74,73 +74,71 @@ interactions:
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  headers:
  content-encoding:
  - gzip
  content-type:
  - application/json
  date:
- - Tue, 15 Oct 2024 17:33:08 GMT
+ - Thu, 17 Oct 2024 19:39:38 GMT
  fly-request-id:
- - 01JA8KV8BMJ380XJVEW3SWA9SD-arn
+ - 01JADZWAMMJXF4P100EQHAAXGJ-arn
  ratelimit-limit:
  - '15'
  ratelimit-remaining:
  - '13'
  ratelimit-reset:
- - '7'
+ - '6'
  server:
- - Fly/c3dfa7435 (2024-10-15)
+ - Fly/27d4b875a (2024-10-17)
  transfer-encoding:
  - chunked
  vary: