rescue int->str for svlengths

fulcrumgenomics · Sep 9, 2024 · 20d57bb · 20d57bb
1 parent 58a84a9
commit 20d57bb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/sniffles/vcf.py b/src/sniffles/vcf.py
@@ -222,7 +222,7 @@ def write_call(self, call):
  infos = {
  "SVTYPE": call.svtype,
  "SVLEN": call.svlen,
- "SVLENGTHS": call.svlens,
+ "SVLENGTHS": ",".join(str(sv_len) for sv_len in call.svlens),
  "END": end,
  "SUPPORT": call.support,
  "RNAMES": call.rnames if self.config.output_rnames else None,