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Add flag to allow for the output of all alignments in bwa mem. #380
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…onal alignments are output as secondary alignemnts.
Codecov Report
@@ Coverage Diff @@
## master #380 +/- ##
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Coverage 91.47% 91.47%
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Files 31 31
Lines 1185 1185
Branches 80 80
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Hits 1084 1084
Misses 101 101 Continue to review full report at Codecov.
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tfenne
approved these changes
Jul 7, 2020
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Additional alignments are output as secondary alignments.