| layout | id | title | type | fail_mode | status | contact |
|---|---|---|---|---|---|---|
rule |
GORULE:0000033 |
DEPRECATED. Public Reference IDs (PMID, PMC, doi, or GO_REF) should be preferred over group specific Reference IDs |
repair |
soft |
deprecated |
References for an annotation should prefer sources from PMID, PMC, doi, or GO_REF over group specific references.
Group references that are part of an "external accession" in a GO_REF will be replaced by the GO_REF.
For example, FB:FBrf0159398 is an external accession for GO_REF:0000015, so the FB ID will be repaired to the GO_REF.
If the group reference is the only one present, it will be reported as a warning, but not removed.
Already existing References from PMID, PMC, doi, or GO_REF will not be reported on as these are all correct.
The list of GO_REFs are here: https:/geneontology/go-site/tree/master/metadata/gorefs.yaml.