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This repository has been archived by the owner on May 25, 2024. It is now read-only.

Releases: google/nucleus

Nucleus 0.6.0

31 Aug 23:19
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  • Upgrade to support TensorFlow 2.6.0 specifically.
  • Upgrade to Python 3.8.

This release was tested on Ubuntu 20.04.

Nucleus 0.5.9

26 Jul 16:50
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New in 0.5.9:

  • Upgrade to support TensorFlow 2.5.0 specifically.

Nucleus 0.5.8

25 Feb 18:57
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New in 0.5.8:

  • Update util/vis.py to use updated channel names.
  • Support MED_DP (median DP) field for a VariantCall.

Nucleus 0.5.7

15 Jan 17:27
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New in 0.5.7:

  • Add automatic pileup curation functionality in util/vis.py.
  • Upgrade protobuf settings to support TensorFlow 2.4.0 specifically.

Nucleus 0.5.6

10 Dec 21:43
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New in 0.5.6:

  • Upgrade to protobuf 3.9.2 to support TensorFlow 2.3.0 specifically.

Nucleus 0.5.5

10 Dec 19:33
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New in 0.5.5:

  • Upgrade protobuf settings to support TensorFlow 2.2.0 specifically.

Nucleus 0.5.4

10 Dec 19:32
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New in 0.5.4:

  • Upgrade to protobuf 3.8.0 to support TensorFlow 2.1.0.
  • Add explicit .close() method to TFRecordWriter.

Nucleus 0.5.3

09 Sep 01:45
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New in 0.5.3:

  • Fixes memory leaks in message_module.cc.
  • Updates setup.py to install .egg-info directory for pip 20.2+ compatibility.
  • Pins TensorFlow to 2.0.0 for protobuf version compatibility.
  • Pins setuptools to 49.6.0 to avoid breaking changes of setuptools 50.

Nucleus 0.5.2

09 Jul 18:16
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New in 0.5.2:

  • Upgrades htslib dependency from 1.9 to 1.10.2.
  • More informative error message for failed SAM header parsing.
  • util/vis.py now supports saving images to Google Cloud Storage.

Nucleus 0.5.1

29 Apr 21:59
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New in 0.5.1:

  • Updated documentation.
  • Added list of read-advancing CIGAR ops.
  • Added label_from_example utility in nucleus.util.vis.
  • Added simplify_variant_alleles in nucleus.util.variant_utils.