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feat: add bed file datafetcher #877

Merged
merged 45 commits into from
May 6, 2023
Merged

feat: add bed file datafetcher #877

merged 45 commits into from
May 6, 2023

Commits on Apr 19, 2023

  1. feat: add bed file datafetcher

    @etowahadams
    etowahadams committed Apr 19, 2023
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  2. fix: add types and refactor csv-data-fetcher

    @etowahadams
    etowahadams committed Apr 19, 2023
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  3. fix: pull out some constructor logic into function

    @etowahadams
    etowahadams committed Apr 19, 2023
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Commits on Apr 20, 2023

  1. docs: comments to schema

    @etowahadams
    etowahadams committed Apr 20, 2023
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  2. fix: make function to calculate cumulative position

    @etowahadams
    etowahadams committed Apr 20, 2023
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  3. fix: remove unused import

    @etowahadams
    etowahadams committed Apr 20, 2023
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Commits on Apr 21, 2023

  1. feat(bed-data-fetcher): parsing functions

    @etowahadams
    etowahadams committed Apr 21, 2023
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Commits on Apr 22, 2023

  1. refactor(bed-data-fetcher): make tiles function async

    @etowahadams
    etowahadams committed Apr 22, 2023
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Commits on Apr 24, 2023

  1. refactor(bed-data-fetcher): add types, refine tests

    @etowahadams
    etowahadams committed Apr 24, 2023
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  2. refactor(csv-data-fetcher): finish adding types

    @etowahadams
    etowahadams committed Apr 24, 2023
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  3. test(bed-data-fetcher): add more tests for custom columns

    @etowahadams
    etowahadams committed Apr 24, 2023
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Commits on Apr 25, 2023

  1. feat(bed-data-fetcher): add tabix bed data fetcher

    @etowahadams
    etowahadams committed Apr 25, 2023
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Commits on Apr 26, 2023

  1. feat(bed-data-fetcher): add support for custom column names

    @etowahadams
    etowahadams committed Apr 26, 2023
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Commits on Apr 27, 2023

  1. refactor(bed-data-fetcher): move around functions for clarity

    @etowahadams
    etowahadams committed Apr 27, 2023
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  2. refactor(bed-worker): make bed parser create a line parser

    @etowahadams
    etowahadams committed Apr 27, 2023
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  3. fix(bed-data-fetcher): change fetcher name

    @etowahadams
    etowahadams committed Apr 27, 2023
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  4. fix: remove git add from pre-commit hook

    @etowahadams
    etowahadams committed Apr 27, 2023
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  5. refactor: move emptyTile to utils

    @etowahadams
    etowahadams committed Apr 27, 2023
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  6. fix: missing semicolon

    @etowahadams
    etowahadams committed Apr 27, 2023
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Commits on Apr 28, 2023

  1. fix: update bbi

    @etowahadams
    etowahadams committed Apr 28, 2023
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  2. test(csv-data-fetcher): add types to tests

    @etowahadams
    etowahadams committed Apr 28, 2023
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Commits on Apr 29, 2023

  1. refactor(bed-data-fetcher): separate shared types

    @etowahadams
    etowahadams committed Apr 29, 2023
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  2. test: write bed parser tests

    @etowahadams
    etowahadams committed Apr 29, 2023
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  3. Merge branch 'master' into etowahadams/make-bed-primitive

    @etowahadams
    etowahadams authored Apr 29, 2023
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  4. fix: update schema

    @etowahadams
    etowahadams committed Apr 29, 2023
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  5. Merge branch 'etowahadams/make-bed-primitive' of github.com:gosling-l… 

    …ang/gosling.js into etowahadams/make-bed-primitive
    @etowahadams
    etowahadams committed Apr 29, 2023
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  6. fix: typo

    @etowahadams
    etowahadams committed Apr 29, 2023
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  7. fix: remove console-warns, rename parser

    @etowahadams
    etowahadams committed Apr 29, 2023
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  8. docs: improve schema description

    @etowahadams
    etowahadams committed Apr 29, 2023
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  9. fix: typo

    @etowahadams
    etowahadams committed Apr 29, 2023
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Commits on May 2, 2023

  1. refactor: make bed parser resemble vcf parser

    @etowahadams
    etowahadams committed May 2, 2023
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  2. fix: add d3 types

    @etowahadams
    etowahadams committed May 2, 2023
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  3. refactor: add types to CSV data fetcher

    @etowahadams
    etowahadams committed May 2, 2023
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Commits on May 5, 2023

  1. refactor: based on code review

    @etowahadams
    etowahadams committed May 5, 2023
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  2. fix: change type import

    @etowahadams
    etowahadams committed May 5, 2023
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  3. refactor: make if logic clearer in bed-parser.ts 

    Co-authored-by: Sehi L'Yi <[email protected]>
    @etowahadams @sehilyi
    etowahadams and sehilyi authored May 5, 2023
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  4. docs: add comments to custom header logic

    @etowahadams
    etowahadams committed May 5, 2023
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Commits on May 6, 2023

  1. fix: remove unused param 

    Co-authored-by: Sehi L'Yi <[email protected]>
    @etowahadams @sehilyi
    etowahadams and sehilyi authored May 6, 2023
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  2. refactor: make parser params more explicit

    @etowahadams
    etowahadams committed May 6, 2023
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  3. Merge branch 'etowahadams/make-bed-primitive' of github.com:gosling-l… 

    …ang/gosling.js into etowahadams/make-bed-primitive

merge remote commits
    @etowahadams
    etowahadams committed May 6, 2023
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  4. fix: bed-parser tests

    @etowahadams
    etowahadams committed May 6, 2023
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  5. fix: add bed to typecheck

    @etowahadams
    etowahadams committed May 6, 2023
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  6. feat: add BED example

    @etowahadams
    etowahadams committed May 6, 2023
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  7. Merge branch 'master' into etowahadams/make-bed-primitive

    @etowahadams
    etowahadams authored May 6, 2023
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  8. fix: missing space

    @etowahadams
    etowahadams committed May 6, 2023
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