[4.1.0] Hibernate Native image won't run with PostgreSQL #9136

lprimak · 2024-08-13T07:55:56Z

Environment Details

Helidon Version: 4.1.0,4.1.2
Helidon MP
JDK version: 21.0.2-graalce
OS: Mac

Problem Description

Modified database-mp sample to use Postgres instead of H2
However, when running the resulting image, there seem to be missing reflection hints:

./target/helidon-greeter-1.x-SNAPSHOT
Exception in thread "main" org.hibernate.boot.registry.classloading.spi.ClassLoadingException: Unable to load class [org.hibernate.dialect.PostgreSQLInetJdbcType]
	at org.hibernate.boot.registry.classloading.internal.ClassLoaderServiceImpl.classForName(ClassLoaderServiceImpl.java:126)
	at org.hibernate.dialect.PgJdbcHelper.createJdbcType(PgJdbcHelper.java:60)
	at org.hibernate.dialect.PgJdbcHelper.getInetJdbcType(PgJdbcHelper.java:46)
	at org.hibernate.dialect.PostgreSQLDialect.contributePostgreSQLTypes(PostgreSQLDialect.java:1395)
	at org.hibernate.dialect.PostgreSQLDialect.contributeTypes(PostgreSQLDialect.java:1368)
	at org.hibernate.dialect.Dialect.contribute(Dialect.java:1589)
	at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.handleTypes(MetadataBuildingProcess.java:630)
	at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:174)
	at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:1432)
	at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:1503)
	at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:142)
	at io.helidon.integrations.cdi.jpa.PersistenceExtension.produceEntityManagerFactory(PersistenceExtension.java:1458)
	at org.jboss.weld.bootstrap.events.configurator.BeanConfiguratorImpl$CreateCallback.create(BeanConfiguratorImpl.java:372)
	at org.jboss.weld.bootstrap.events.configurator.BeanConfiguratorImpl$ImmutableBean.create(BeanConfiguratorImpl.java:511)
	at org.jboss.weld.contexts.AbstractContext.get(AbstractContext.java:96)
	at org.jboss.weld.bean.ContextualInstanceStrategy$DefaultContextualInstanceStrategy.get(ContextualInstanceStrategy.java:100)
	at org.jboss.weld.bean.ContextualInstance.get(ContextualInstance.java:50)
	at org.jboss.weld.manager.BeanManagerImpl.getReference(BeanManagerImpl.java:679)
	at org.jboss.weld.bean.builtin.InstanceImpl.getBeanInstance(InstanceImpl.java:262)
	at org.jboss.weld.bean.builtin.InstanceImpl$InstanceImplIterator.next(InstanceImpl.java:335)
	at io.helidon.integrations.cdi.jpa.PersistenceExtension.workAroundWeldBeanMetadataCreationBug(PersistenceExtension.java:661)
	at [email protected]/java.lang.reflect.Method.invoke(Method.java:580)
	at org.jboss.weld.injection.StaticMethodInjectionPoint.invoke(StaticMethodInjectionPoint.java:95)
	at org.jboss.weld.injection.StaticMethodInjectionPoint.invoke(StaticMethodInjectionPoint.java:85)
	at org.jboss.weld.injection.MethodInvocationStrategy$DefaultMethodInvocationStrategy.invoke(MethodInvocationStrategy.java:144)
	at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:330)
	at org.jboss.weld.event.ExtensionObserverMethodImpl.sendEvent(ExtensionObserverMethodImpl.java:126)
	at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:308)
	at org.jboss.weld.event.ObserverMethodImpl.notify(ObserverMethodImpl.java:286)
	at jakarta.enterprise.inject.spi.ObserverMethod.notify(ObserverMethod.java:142)
	at org.jboss.weld.util.Observers.notify(Observers.java:166)
	at org.jboss.weld.event.ObserverNotifier.notifySyncObservers(ObserverNotifier.java:285)
	at org.jboss.weld.event.ObserverNotifier.notify(ObserverNotifier.java:273)
	at org.jboss.weld.event.EventImpl.fire(EventImpl.java:96)
	at io.helidon.microprofile.cdi.HelidonContainerImpl.doStart(HelidonContainerImpl.java:311)
	at io.helidon.common.context.Contexts.runInContext(Contexts.java:137)
	at io.helidon.microprofile.cdi.HelidonContainerImpl.start(HelidonContainerImpl.java:258)
	at io.helidon.microprofile.cdi.Main.main(Main.java:80)
	at com.flowlogix.example.HelloEntryPoint.main(HelloEntryPoint.java:36)
	at [email protected]/java.lang.invoke.LambdaForm$DMH/sa346b79c.invokeStaticInit(LambdaForm$DMH)
Caused by: java.lang.ClassNotFoundException: org.hibernate.dialect.PostgreSQLInetJdbcType
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.hub.ClassForNameSupport.forName(ClassForNameSupport.java:122)
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.hub.ClassForNameSupport.forName(ClassForNameSupport.java:86)
	at [email protected]/java.lang.Class.forName(DynamicHub.java:1356)
	at [email protected]/java.lang.Class.forName(DynamicHub.java:1345)
	at org.hibernate.boot.registry.classloading.internal.ClassLoaderServiceImpl.classForName(ClassLoaderServiceImpl.java:123)
	... 39 more

Steps to reproduce

The text was updated successfully, but these errors were encountered:

lprimak · 2024-08-13T08:45:55Z

@tvallin another one for you :)

tomas-langer · 2024-08-15T16:59:59Z

In Helidon, this would be in:
integrations/db/pgsql/src/main/resources/META-INF/helidon/native-image/reflection-config.json

Also you can work-around this problem by adding the file src/main/resources/META-INF/helidon/native-image/reflection-config.json into your own project, and adding the org.hibernate.dialect.PostgreSQLInetJdbcType, such as:

{
    "classes": [
        "org.hibernate.dialect.PostgreSQLInetJdbcType",
    ]
}

lprimak · 2024-08-15T17:06:26Z

There are far more classes that are missing
Started to add them one by one and got tired pretty quick :)

lprimak · 2024-08-15T19:09:11Z

Is there any way to figure out which classes are missing all at once instead of one-by-one?
Since Graal compilation is so slow, it takes forever figuring out the configuration files...

lprimak · 2024-10-11T00:24:18Z

@tomas-langer @tvallin is there an "easy"/fast way to figure out configuration?

lprimak · 2024-10-11T17:55:55Z

Tried https:/tvallin/helidon/tree/4.x-native-image-hibernate
However, got the following error.
Not sure how / if that relates, but I can't get passed this...

[WARNING] [stderr] Error: Classes that should be initialized at run time got initialized during image building:
[WARNING] [stderr]  org.eclipse.yasson.internal.JsonbContext was unintentionally initialized at build time. To see why org.eclipse.yasson.internal.JsonbContext got initialized use --trace-class-initialization=org.eclipse.yasson.internal.JsonbContext
[WARNING] [stderr] To see how the classes got initialized, use --trace-class-initialization=org.eclipse.yasson.internal.JsonbContext

lprimak · 2024-10-11T18:30:11Z

More info:

[WARNING] [stderr] Error: Classes that should be initialized at run time got initialized during image building:
[WARNING] [stderr]  org.eclipse.yasson.internal.JsonbContext was unintentionally initialized at build time. org.hibernate.type.format.jakartajson.JakartaJsonIntegration caused initialization of this class with the following trace: 
[WARNING] [stderr] 	at org.eclipse.yasson.internal.JsonbContext.<clinit>(JsonbContext.java:45)
[WARNING] [stderr] 	at org.eclipse.yasson.internal.JsonBinding.<init>(JsonBinding.java:45)
[WARNING] [stderr] 	at org.eclipse.yasson.internal.JsonBindingBuilder.build(JsonBindingBuilder.java:61)
[WARNING] [stderr] 	at jakarta.json.bind.JsonbBuilder.create(JsonbBuilder.java:86)
[WARNING] [stderr] 	at org.hibernate.type.format.jakartajson.JsonBJsonFormatMapper.<init>(JsonBJsonFormatMapper.java:27)
[WARNING] [stderr] 	at org.hibernate.type.format.jakartajson.JakartaJsonIntegration.<clinit>(JakartaJsonIntegration.java:16)
[WARNING] [stderr] 
[WARNING] [stderr]

lprimak · 2024-10-11T19:36:23Z

Reproducer: https:/flowlogix/native-java
Run with mvn package -Phelidon-jpa,native

lprimak · 2024-10-11T22:52:52Z

Ok, got passed it by adding --initialize-at-build-time=org.eclipse.yasson.internal and project compiled!
However, now getting an exception at runtime:

Exception in thread "main" java.lang.IllegalArgumentException: Class org.jboss.jandex.ClassInfo[] is instantiated reflectively but was never registered.Register the class by adding "unsafeAllocated" for the class in reflect-config.json.
	at org.graalvm.nativeimage.builder/com.oracle.svm.core.graal.snippets.SubstrateAllocationSnippets.arrayHubErrorStub(SubstrateAllocationSnippets.java:351)
	at org.jboss.jandex.Utils.lambda$unfold$0(Utils.java:58)
	at [email protected]/java.util.HashMap.forEach(HashMap.java:1429)
	at org.jboss.jandex.Utils.unfold(Utils.java:57)
	at org.jboss.jandex.Index.create(Index.java:186)
	at org.jboss.jandex.Indexer.complete(Indexer.java:2658)
	at org.hibernate.boot.archive.scan.spi.ClassFileArchiveEntryHandler.toClassDescriptor(ClassFileArchiveEntryHandler.java:66)
	at org.hibernate.boot.archive.scan.spi.ClassFileArchiveEntryHandler.handleEntry(ClassFileArchiveEntryHandler.java:54)
	at org.hibernate.boot.archive.internal.JarFileBasedArchiveDescriptor.visitArchive(JarFileBasedArchiveDescriptor.java:147)
	at org.hibernate.boot.archive.scan.spi.AbstractScannerImpl.scan(AbstractScannerImpl.java:48)
	at org.hibernate.boot.model.process.internal.ScanningCoordinator.coordinateScan(ScanningCoordinator.java:75)
	at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.prepare(MetadataBuildingProcess.java:149)
	at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:296)
	at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.<init>(EntityManagerFactoryBuilderImpl.java:198)
	at org.hibernate.jpa.boot.spi.Bootstrap.getEntityManagerFactoryBuilder(Bootstrap.java:35)
	at org.hibernate.jpa.boot.spi.Bootstrap.getEntityManagerFactoryBuilder(Bootstrap.java:102)
	at org.hibernate.jpa.HibernatePersistenceProvider.getEntityManagerFactoryBuilder(HibernatePersistenceProvider.java:169)
	at org.hibernate.jpa.HibernatePersistenceProvider.createContainerEntityManagerFactory(HibernatePersistenceProvider.java:142)
	at io.helidon.integrations.cdi.jpa.PersistenceExtension.produceEntityManagerFactory(PersistenceExtension.java:1458)
	at org.jboss.weld.bootstrap.events.configurator.BeanConfiguratorImpl$CreateCallback.create(BeanConfiguratorImpl.java:383)
	at org.jboss.weld.bootstrap.events.configurator.BeanConfiguratorImpl$CreateCallback.access$700(BeanConfiguratorImpl.java:350)
	at org.jboss.weld.bootstrap.events.configurator.BeanConfiguratorImpl$ImmutableBean.create(BeanConfiguratorImpl.java:522)
	at org.jboss.weld.contexts.AbstractContext.get(AbstractContext.java:96)
	at org.jboss.weld.bean.ContextualInstanceStrategy$DefaultContextualInstanceStrategy.get(ContextualInstanceStrategy.java:106)
	at org.jboss.weld.bean.ContextualInstance.get(ContextualInstance.java:50)
	at org.jboss.weld.manager.BeanManagerImpl.getReference(BeanManagerImpl.java:706)
	at org.jboss.weld.bean.builtin.InstanceImpl.getBeanInstance(InstanceImpl.java:267)
	at org.jboss.weld.bean.builtin.InstanceImpl.access$200(InstanceImpl.java:73)
	at org.jboss.weld.bean.builtin.InstanceImpl$InstanceImplIterator.next(InstanceImpl.java:340)
	at io.helidon.integrations.cdi.jpa.PersistenceExtension.workAroundWeldBeanMetadataCreationBug(PersistenceExtension.java:661)
	at [email protected]/java.lang.reflect.Method.invoke(Method.java:580)
	at org.jboss.weld.injection.StaticMethodInjectionPoint.invoke(StaticMethodInjectionPoint.java:99)
	at org.jboss.weld.injection.StaticMethodInjectionPoint.invoke(StaticMethodInjectionPoint.java:88)
	at org.jboss.weld.injection.MethodInvocationStrategy$DefaultMethodInvocationStrategy.invoke(MethodInvocationStrategy.java:153)
	at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:350)
	at org.jboss.weld.event.ExtensionObserverMethodImpl.sendEvent(ExtensionObserverMethodImpl.java:136)
	at org.jboss.weld.event.ObserverMethodImpl.sendEvent(ObserverMethodImpl.java:328)
	at org.jboss.weld.event.ObserverMethodImpl.notify(ObserverMethodImpl.java:298)
	at jakarta.enterprise.inject.spi.ObserverMethod.notify(ObserverMethod.java:142)
	at org.jboss.weld.util.Observers.notify(Observers.java:176)
	at org.jboss.weld.event.ObserverNotifier.notifySyncObservers(ObserverNotifier.java:307)
	at org.jboss.weld.event.ObserverNotifier.notify(ObserverNotifier.java:293)
	at org.jboss.weld.event.EventImpl.fire(EventImpl.java:96)
	at io.helidon.microprofile.cdi.HelidonContainerImpl.doStart(HelidonContainerImpl.java:311)
	at io.helidon.common.context.Contexts.runInContext(Contexts.java:137)
	at io.helidon.microprofile.cdi.HelidonContainerImpl.start(HelidonContainerImpl.java:258)
	at io.helidon.microprofile.cdi.Main.main(Main.java:80)
	at com.flowlogix.example.HelloEntryPoint.main(HelloEntryPoint.java:36)
	at [email protected]/java.lang.invoke.LambdaForm$DMH/sa346b79c.invokeStaticInit(LambdaForm$DMH)

tvallin · 2024-10-14T13:47:17Z

To fix this, add a reflect-config.json under com/flowlogix/native/helidon-greeter with this content:

[
  {
    "name": "org.jboss.jandex.ClassInfo[]",
    "unsafeAllocated": true
  }
]

lprimak · 2024-10-14T15:12:08Z

Thanks @tvallin !!!
That change made the program run.
I am guessing this change should be integrated into hibernate-cdi integration module as well?

Thank you!

m0mus added bug Something isn't working P3 native-image 4.x Version 4.x labels Aug 15, 2024

m0mus assigned tvallin Aug 15, 2024

tvallin linked a pull request Oct 15, 2024 that will close this issue

4.x: Add additional postgresql + hibernate native-image configuration #9393

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[4.1.0] Hibernate Native image won't run with PostgreSQL #9136

[4.1.0] Hibernate Native image won't run with PostgreSQL #9136

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[4.1.0] Hibernate Native image won't run with PostgreSQL #9136

[4.1.0] Hibernate Native image won't run with PostgreSQL #9136

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Environment Details

Problem Description

Steps to reproduce

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