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python-app.yml
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# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python
name: Hest tests
on:
#push:
# branches: [ "main", "develop"]
pull_request:
branches: [ "main" ]
permissions:
contents: read
jobs:
build:
runs-on: ubuntu-latest
env:
HF_READ_TOKEN_PAUL: ${{ secrets.HF_READ_TOKEN_PAUL }}
steps:
- uses: actions/checkout@v4
- name: Set up Python 3.9
uses: actions/setup-python@v3
with:
python-version: "3.9"
- name: Install python dependencies
run: |
python -m pip install -e .
- name: Install apt dependencies
run: |
sudo apt-get update
sudo apt-get install libvips libvips-dev openslide-tools
- name: Run tests
run: |
python tests/hest_tests.py