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FHIR feature updates #285

Merged
merged 4 commits into from
May 14, 2024
Merged

FHIR feature updates #285

merged 4 commits into from
May 14, 2024

Commits on May 13, 2024

  1. FHIR Feature 

    - Added: schema/fhir_json.csv: For automation of conversion by utilizing CSV export from curated GoogleSheet.
- Update: Comments: Added state of mappings between SSSOM and FHIR ConceptMap
    @joeflack4
    joeflack4 committed May 13, 2024
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  2. FHIR Feature 

    - Update: Minor codestyle updates, comments, todo's
- Delete: Unused schema/fhir_json.csv. Mappings will continue to be done via pure Python
- Bugfix: extension.ValueString -> extension.valueString
- Delete: Comments about spec field mappings
    @joeflack4
    joeflack4 committed May 13, 2024
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  3. Refactor JSON writer functions 

    - Refactored 3 JSON writer functions to a state that they were probably intended to be in: 1 json function with branching logic depending on 'serialization' param.
    @joeflack4
    joeflack4 committed May 13, 2024
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  4. FHIR Feature 

    - Add: _test_to_fhir_json()
- Update: test_write_sssom_fhir(): More assertions
- Update: Fixed some typos
- Update: model mappings: exporter: title --> title (was previously name --> title)
- Update: Drepecated these functions instead of deleting: write_fhir_json(), write_ontoportal_json()
    @joeflack4
    joeflack4 committed May 13, 2024
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