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Add QC check for proper treatment of preferredExternal annotations #8012

Merged
merged 18 commits into from
Aug 2, 2024
Merged

Add QC check for proper treatment of preferredExternal annotations #8012

merged 18 commits into from
Aug 2, 2024

Commits on Jul 29, 2024

  1. Add QC check for proper treatment of preferred external 

    Adding check that ensures that:

1) Xrefs with preferred external must have a corresponding equivalentto on the same class
2) Xrefs with preferred external must be related to another class which are equivalent as well
    @matentzn
    matentzn committed Jul 29, 2024
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  2. Add OMIA to xref without source check

    @matentzn
    matentzn committed Jul 29, 2024
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Commits on Aug 1, 2024

  1. remove incorrect xref

    @twhetzel
    twhetzel committed Aug 1, 2024
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  2. remove non-equivalent SCTID:609622007

    @twhetzel
    twhetzel committed Aug 1, 2024
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  3. remove MONDO:preferredExternal from obsolete OMIM:277610 entry

    @twhetzel
    twhetzel committed Aug 1, 2024
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  4. add MONDO:preferredExternal to DOID:3774, DOID:3773 is obsolete and f… 

    …ix OMIA
    @twhetzel
    twhetzel committed Aug 1, 2024
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  5. remove incorrect xref to Orphanet:3056

    @twhetzel
    twhetzel committed Aug 1, 2024
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  6. change status of Orphanet:85328 and revert prior change

    @twhetzel
    twhetzel committed Aug 1, 2024
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  7. fix Orphanet:85328 status

    @twhetzel
    twhetzel committed Aug 1, 2024
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  8. add correct orphanet and confirm others are obsolete

    @twhetzel
    twhetzel committed Aug 1, 2024
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  9. add MONDO:equivalentTo OMIA:000605

    @twhetzel
    twhetzel committed Aug 1, 2024
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  10. remove MONDO:preferredExternal from OMIM:207720 since obsolete

    @twhetzel
    twhetzel committed Aug 1, 2024
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  11. remove prefExt and SCTID that can not be found

    @twhetzel
    twhetzel committed Aug 1, 2024
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  12. fix obsEq

    @twhetzel
    twhetzel committed Aug 1, 2024
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  13. fix proxy merges

    @twhetzel
    twhetzel committed Aug 1, 2024
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Commits on Aug 2, 2024

  1. edits for MONDO:0010407

    @twhetzel
    twhetzel committed Aug 2, 2024
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  2. edits for MONDO:0016706

    @twhetzel
    twhetzel committed Aug 2, 2024
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  3. revert change for MONDO:0010407

    @twhetzel
    twhetzel committed Aug 2, 2024
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