Fix indent on pctMapped

mossmatters · Sep 9, 2020 · 6313a82 · 6313a82
1 parent bbb4e95
commit 6313a82
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/hybpiper_stats.py b/hybpiper_stats.py
@@ -47,10 +47,10 @@ def enrich_efficiency_bwa(bamfilename):
  flagstat_results = [line for line in unpaired_child.stdout.readlines()]
  numReads += float(flagstat_results[0].split()[0])
  mappedReads += float(flagstat_results[4].split()[0])
-  try:
-  pctMapped = mappedReads/numReads
-  except ZeroDivisionError:
-  pctMapped = 0.0
+ try:
+ pctMapped = mappedReads/numReads
+ except ZeroDivisionError:
+ pctMapped = 0.0
  return str(int(numReads)),str(int(mappedReads)),"{0:.3f}".format(pctMapped)
 
 def recovery_efficiency(name):