Merge pull request #100 from ncbo/96-include-combined-node-and-edge-c…

…ounts-on-landing-page

Add combined node and edge counts to dashboard

docs/_config.yml

@@ -53,6 +53,8 @@ plugins:
 
 # Ontology status table goes under here.
 totalcount: 1050
+totalnodecount: 10509205
+totaledgecount: 20055264
 ontologies:
 - edgecount: 555
  id: REGN_BRO

docs/index.html

@@ -15,6 +15,8 @@ <h3>Learn more about KG-Bioportal</h3>
  <h3>KG-Bioportal Overview</h3>
  <p>The collection includes graph files for {{ site.totalcount }} ontologies. </p>
 
+ <p>In all, this includes {{site.totalnodecount }} ontology classes as nodes and {{site.totaledgecount}} relations between classes as edges.</p>
+
  {% include fig1.html %}
  {% include fig2.html %}
  <br>

src/kg_bioportal/transformer.py

@@ -119,12 +119,23 @@ def transform_all(self, compress: bool) -> None:
  # Write total stats to a yaml
  logging.info("Writing total stats to total_stats.yaml.")
  # Get the count of successful transforms
+ # Plus total node and edge counts
  success_count = 0
  for onto in onto_log:
  if onto_log[onto]["status"]:
  success_count += 1
  with open(os.path.join(self.output_dir, "total_stats.yaml"), "w") as f:
  f.write("totalcount: " + str(success_count) + "\n")
+ f.write(
+ "totalnodecount: "
+ + str(sum([onto_log[onto]["nodecount"] for onto in onto_log]))
+ + "\n"
+ )
+ f.write(
+ "totaledgecount: "
+ + str(sum([onto_log[onto]["edgecount"] for onto in onto_log]))
+ + "\n"
+ )
 
  # Dump onto_log to a yaml
  # Rearrange it a bit first