Merge pull request #75 from ncbo/onto_list_header

Skip header in ontology list file
ncbo · Sep 5, 2024 · 1697781 · 1697781
2 parents f83e617 + 414d0cf
commit 1697781
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/src/kg_bioportal/cli.py b/src/kg_bioportal/cli.py
@@ -134,6 +134,7 @@ def download(
  if not ontologies and not ontology_file:
  try:
  with open(f"{output_dir}/{ONTOLOGY_LIST_NAME}", "r") as f:
+ f.readline() # Skip the header
  for line in f:
  onto_list.append(line.strip())
  except FileNotFoundError:
@@ -150,6 +151,7 @@ def download(
  # Parse the ontology_file argument
  if ontology_file:
  with open(ontology_file, "r") as f:
+ f.readline() # Skip the header
  for line in f:
  onto_list.append(line.strip())