Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

use CAIMAN_TEMP to store mcorr memmap and then move back to parent dir #22

Merged
merged 2 commits into from
May 25, 2022

Conversation

kushalkolar
Copy link
Collaborator

This is necessary because caiman has no way to set a filename prefix for saving mcorr memmaps.

Once this is merged upstream in caiman: flatironinstitute/CaImAn#978 this PR in mesmerize-core can be merged. The file is first stored by caiman according to CAIMAN_TEMP and then moved back to the same dir as the input data using the UUID for the filename prefix. Very roundabout but caiman has no way to set filenames for mcorr memmaps ¯\_(ツ)_/¯

@kushalkolar kushalkolar merged commit 6b17fb5 into master May 25, 2022
@kushalkolar kushalkolar added this to the v0.1 milestone Jul 3, 2022
@kushalkolar kushalkolar deleted the caiman-tempdir-mcorr branch November 8, 2022 03:19
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant