Get com coords #9

ArjunPutcha · 2022-05-18T16:02:14Z

Create projection files in for loop using getattr()
extract CoM coords while also getting contour coords

kushalkolar

minor changes

mesmerize_core/algorithms/cnmf.py

mesmerize_core/algorithms/cnmfe.py

mesmerize_core/caiman_extensions/cnmf.py

ArjunPutcha and others added 5 commits April 18, 2022 12:59

get center of mass coordinates

a471573

cnmf projects created same as with mcorr

98e7075

create projections for all algos. standardize methdod

b4aef59

extract COM coordinates used caiman.base.rois.com() function

9239ac0

clean up print statements

9c4c709

kushalkolar reviewed May 18, 2022

View reviewed changes

kushalkolar added 5 commits May 21, 2022 20:18

refactor saving output files for all algos, including projections

337fa32

fix mcorr.get_shifts()

a94e208

update gitignore to not upload test tmp and vids

bd5b54f

fig center-of-mass shitshow, cleaned up get_spatial_contour() methods

7812813

Merge branch 'master' into get_com_coords

542e4ad

kushalkolar merged commit fe19bac into master May 22, 2022

kushalkolar deleted the get_com_coords branch May 22, 2022 03:11

kushalkolar added this to the v0.1 milestone Jul 3, 2022

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