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Scripts for reproducing analyses of large RNA-seq datasets

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Runs of Rail-RNA on large RNA-seq datasets

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GTEx

See gtex/ for how to rerun GTEx alignment jobs on Amazon Elastic MapReduce and how to reproduce figures from the Rail-dbGaP paper.

SRA

See sra/ for how to rerun SRA alignment jobs on Amazon Elastic MapReduce and how to reproduce figures from the paper Human splicing diversity across the Sequence Read Archive.

TCGA

See tcga/ for how to rerun TCGA alignment jobs on Amazon Elastic MapReduce.

License

All software in this repository is licensed under the MIT license. See LICENSE in this directory for details.

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