sty: ruff

fix: require niworkflows branch enh/flip_image that implements AxisFlip

fmriprep/interfaces/reports.py

@@ -233,7 +233,7 @@ class FunctionalSummaryInputSpec(TraitedSpec):
  traits.Enum('lr_flip_warning', 'cost_original', 'cost_flipped'),
  traits.Either(traits.Bool(), traits.Float()),
  desc='Left-right flip check warning and registration costs',
- mandatory=True
+ mandatory=True,
  )
  tr = traits.Float(desc='Repetition time', mandatory=True)
  dummy_scans = traits.Either(traits.Int(), None, desc='number of dummy scans specified by user')
@@ -415,7 +415,7 @@ class _CheckFlipOutputSpec(TraitedSpec):
  traits.Enum('warning', 'cost_original', 'cost_flipped'),
  traits.Either(traits.Bool(), traits.Float()),
  desc='Left-right flip check warning and registration costs',
- mandatory=True
+ mandatory=True,
  )
 
 

fmriprep/workflows/bold/registration.py

@@ -607,9 +607,16 @@ def init_fsl_bbr_wf(
  )
 
  def flip_detection_not_implemented_yet():
- return {'warning': 'Flip detection not implemented yet for alignment with FSL flirt', 'cost_original': '', 'cost_flipped': ''}
-
- check_flip = pe.Node(niu.Function(function=flip_detection_not_implemented_yet, output_names=['flip_info']), name='check_flip')
+ return {
+ 'warning': 'Flip detection not implemented yet for alignment with FSL flirt',
+ 'cost_original': '',
+ 'cost_flipped': '',
+ }
+
+ check_flip = pe.Node(
+ niu.Function(function=flip_detection_not_implemented_yet, output_names=['flip_info']),
+ name='check_flip',
+ )
  # fmt:off
  workflow.connect([
  (inputnode, mask_t1w_brain, [('t1w_preproc', 'in_file'),

requirements.txt

@@ -198,7 +198,7 @@ nitransforms==23.0.1
  # via
  # niworkflows
  # sdcflows
-niworkflows==1.10.2
+niworkflows @ git+https:/celprov/niworkflows@enh/flip_image
  # via
  # sdcflows
  # smriprep