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N4BiasFieldCorrection fails on multiple run dataset #3314
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@mariagiuliat I noticed that your BOLD files do not follow BIDS format. You have As for the N4BiasFieldCorrection failure, I would recommend trying to follow the debugging steps taken in #3307- specifically @effigies' instructions in #3307 (comment). |
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What happened?
We are running fmriprep on a dataset composed by two different sessions, each one with two tasks and two resting-state. Each task has 5 runs.
The pipeline crashes when doing the N4BiasFieldCorrection. Anyone knows why is this happening?
The error reported is referring only to one run but it happens for all of them.
I also tried to run fmriprep with and without the -u $UID flag
This is my bids tree:
Thank you!
What command did you use?
What version of fMRIPrep are you running?
fMRIPrep-23.2.1
How are you running fMRIPrep?
Docker
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
Additional information / screenshots
No response
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