This is the GSoC branch used in tandem with https:/noahlb123/ModelBricks_source to complete the 2021 ModelBricks GSoC
Project Summary-
Links to project -
- Testing Build- http://model-bricks-testing.herokuapp.com
- Stable Build- http://www.modelbricks.org
Link to repositories -
- GSoC Branches -
- API repo - https:/noahlb123/vcell
- Modelbricks (front end) repo - https:/noahlb123/ModelBricks_source
- Main Branches -
- API repo - https:/virtualcell/vcell
- Modelbricks (front end) repo - https:/vcellmike/ModelBricks_source
Proposal Goals Completed and Merged-
- Draw Java-script generated cartoons for reactions
- Draw membrane-bound species and molecules
- Reformat text annotations
- Enable all public models by all users to be displayed
- Implement advanced filtering and browsing
Proposal Goals Todo-
- Create icons for each URI link
- Implement user logging in and viewing their private models
- Enable convenient display of simulation results
- Enhance API to enable search by model elements
- Enhance API to enable model permissions change
- Enhance API to enable running/stopping simulations and see progress
Extra Additions Completed
- Merged-
- Completely overhauled printable view
- General stylization and various small functionality additions
- Added “Events” and “Assignment Rules” pages in “Applications”
- Pending-
- Enhance API to serve SEDML, SBML, and BNGL file formats