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bspo.owl
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bspo.owl
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<?xml version="1.0"?>
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/bspo.owl#"
xml:base="http://purl.obolibrary.org/obo/bspo.owl"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:obo="http://purl.obolibrary.org/obo/"
xmlns:owl="http://www.w3.org/2002/07/owl#"
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:xml="http://www.w3.org/XML/1998/namespace"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:bspo="http://purl.obolibrary.org/obo/bspo#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:skos="http://www.w3.org/2004/02/skos/core#"
xmlns:swrl="http://www.w3.org/2003/11/swrl#"
xmlns:swrla="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#"
xmlns:swrlb="http://www.w3.org/2003/11/swrlb#"
xmlns:terms="http://purl.org/dc/terms/"
xmlns:subsets="http://purl.obolibrary.org/obo/ro/subsets#"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/bspo.owl">
<owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/bspo/releases/2023-05-27/bspo.owl"/>
<obo:IAO_0000700 rdf:resource="http://purl.obolibrary.org/obo/CARO_0000000"/>
<dc:description>An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides and surfaces. These concepts can be used at multiple biological scales and in a diversity of taxa, including plants, animals and fungi. The BSPO is used to provide a source of anatomical location descriptors for logically defining anatomical entity classes in anatomy ontologies.</dc:description>
<dc:title>Biological Spatial Ontology</dc:title>
<terms:license rdf:resource="https://creativecommons.org/licenses/by/3.0/"/>
<oboInOwl:NamespaceIdRule>* BSPO:$sequence(7,0,999999999)$</oboInOwl:NamespaceIdRule>
<oboInOwl:default-namespace>spatial</oboInOwl:default-namespace>
<rdfs:comment>based on FBql</rdfs:comment>
<owl:versionInfo rdf:datatype="http://www.w3.org/2001/XMLSchema#string">2023-05-27</owl:versionInfo>
</owl:Ontology>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Annotation properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/IAO_0000111 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000111"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000112 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000112"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000114 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000114"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000115 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115">
<obo:IAO_0000111 xml:lang="en">definition</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. </obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obolibrary.org/obo/obi></obo:IAO_0000119>
<rdfs:label>definition</rdfs:label>
<rdfs:label xml:lang="en">definition</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000116 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116">
<obo:IAO_0000111 xml:lang="en">editor note</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000122"/>
<obo:IAO_0000115 xml:lang="en">An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">PERSON:Daniel Schober</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">GROUP:OBI:<http://purl.obofoundry.org/obo/obi></obo:IAO_0000119>
<rdfs:label xml:lang="en">editor note</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0000117 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000117"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000118 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000118"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000119 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000119"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000232 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000233 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000233"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000234 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000234"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000424 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000424"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000589 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000589"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000600 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000600"/>
<!-- http://purl.obolibrary.org/obo/IAO_0000700 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000700">
<obo:IAO_0000111 xml:lang="en">has ontology root term</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">Ontology annotation property. Relates an ontology to a term that is a designated root term of the ontology. Display tools like OLS can use terms annotated with this property as the starting point for rendering the ontology class hierarchy. There can be more than one root.</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Nicolas Matentzoglu</obo:IAO_0000117>
<rdfs:label xml:lang="en">has ontology root term</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/IAO_0100001 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0100001">
<obo:IAO_0000111 xml:lang="en">term replaced by</obo:IAO_0000111>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000125"/>
<obo:IAO_0000115 xml:lang="en">Use on obsolete terms, relating the term to another term that can be used as a substitute</obo:IAO_0000115>
<obo:IAO_0000117 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Person:Alan Ruttenberg</obo:IAO_0000119>
<rdfs:comment xml:lang="en">Add as annotation triples in the granting ontology</rdfs:comment>
<rdfs:label>term replaced by</rdfs:label>
<rdfs:label xml:lang="en">term replaced by</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0001900 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0001900"/>
<!-- http://purl.obolibrary.org/obo/RO_0002259 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002259">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002575 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002575"/>
<!-- http://purl.obolibrary.org/obo/RO_0002579 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002579"/>
<!-- http://purl.obolibrary.org/obo/RO_0002581 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002581">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then it also holds that R -> P o Q. Note that this cannot be expressed directly in OWL</obo:IAO_0000115>
<rdfs:label>is a defining property chain axiom</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0002582 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002582">
<obo:IAO_0000115>If R <- P o Q is a defining property chain axiom, then (1) R -> P o Q holds and (2) Q is either reflexive or locally reflexive. A corollary of this is that P SubPropertyOf R.</obo:IAO_0000115>
<rdfs:label>is a defining property chain axiom where second argument is reflexive</rdfs:label>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/RO_0004049 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004049"/>
<!-- http://purl.obolibrary.org/obo/RO_0004050 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0004050"/>
<!-- http://purl.obolibrary.org/obo/RO_0040042 -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0040042"/>
<!-- http://purl.obolibrary.org/obo/valid_for_go_annotation_extension -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_gp2term -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_gp2term">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_go_ontology -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_go_ontology">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/valid_for_gocam -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/valid_for_gocam">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/bspo#human -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/bspo#human">
<oboInOwl:hasScope rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<rdfs:label>synonym typically used in the context of human anatomy</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/bspo#vertebrate -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/bspo#vertebrate">
<oboInOwl:hasScope rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<rdfs:label>synonym typically used in the context of vertebrate anatomy</rdfs:label>
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.obolibrary.org/obo/ro/subsets#ro-eco -->
<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/ro/subsets#ro-eco">
<rdfs:subPropertyOf rdf:resource="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
</owl:AnnotationProperty>
<!-- http://purl.org/dc/elements/1.1/description -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/description"/>
<!-- http://purl.org/dc/elements/1.1/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/source"/>
<!-- http://purl.org/dc/elements/1.1/title -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/elements/1.1/title"/>
<!-- http://purl.org/dc/terms/contributor -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/contributor"/>
<!-- http://purl.org/dc/terms/creator -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/creator"/>
<!-- http://purl.org/dc/terms/license -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/license"/>
<!-- http://purl.org/dc/terms/source -->
<owl:AnnotationProperty rdf:about="http://purl.org/dc/terms/source"/>
<!-- http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled -->
<owl:AnnotationProperty rdf:about="http://swrl.stanford.edu/ontologies/3.3/swrla.owl#isRuleEnabled"/>
<!-- http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#NamespaceIdRule">
<rdfs:label>namespace-id-rule</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SubsetProperty"/>
<!-- http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#SynonymTypeProperty">
<rdfs:label>synonym_type_property</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#created_by -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#created_by"/>
<!-- http://www.geneontology.org/formats/oboInOwl#creation_date -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#creation_date"/>
<!-- http://www.geneontology.org/formats/oboInOwl#default-namespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#default-namespace"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/>
<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref">
<rdfs:label>database_cross_reference</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym">
<obo:IAO_0000115>An alternative label for a class or property which has the exact same meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0001-5208-3432"/>
<obo:IAO_0000233>https:/information-artifact-ontology/ontology-metadata/issues/20</obo:IAO_0000233>
<rdfs:label xml:lang="en">has exact synonym</rdfs:label>
<rdfs:label>has_exact_synonym</rdfs:label>
<rdfs:seeAlso>https:/information-artifact-ontology/ontology-metadata/issues/20</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym">
<obo:IAO_0000115>An alternative label for a class or property which has a more specific meaning than the preferred name/primary label.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0001-5208-3432"/>
<obo:IAO_0000233>https:/information-artifact-ontology/ontology-metadata/issues/19</obo:IAO_0000233>
<rdfs:label xml:lang="en">has narrow synonym</rdfs:label>
<rdfs:label>has_narrow_synonym</rdfs:label>
<rdfs:seeAlso>https:/information-artifact-ontology/ontology-metadata/issues/19</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBOFormatVersion">
<rdfs:label>has_obo_format_version</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace">
<rdfs:label>has_obo_namespace</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym">
<obo:IAO_0000115>An alternative label for a class or property that has been used synonymously with the primary term name, but the usage is not strictly correct.</obo:IAO_0000115>
<obo:IAO_0000117 rdf:resource="http://orcid.org/0000-0001-5208-3432"/>
<obo:IAO_0000233>https:/information-artifact-ontology/ontology-metadata/issues/21</obo:IAO_0000233>
<rdfs:label xml:lang="en">has related synonym</rdfs:label>
<rdfs:label>has_related_synonym</rdfs:label>
<rdfs:seeAlso>https:/information-artifact-ontology/ontology-metadata/issues/21</rdfs:seeAlso>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasScope -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasScope">
<rdfs:label>has_scope</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#hasSynonymType -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonymType">
<rdfs:label>has_synonym_type</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.geneontology.org/formats/oboInOwl#id -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/>
<!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/>
<!-- http://www.geneontology.org/formats/oboInOwl#is_metadata_tag -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#is_metadata_tag"/>
<!-- http://www.geneontology.org/formats/oboInOwl#shorthand -->
<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand">
<rdfs:label>shorthand</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2000/01/rdf-schema#comment -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#comment"/>
<!-- http://www.w3.org/2000/01/rdf-schema#label -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#label"/>
<!-- http://www.w3.org/2000/01/rdf-schema#seeAlso -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2000/01/rdf-schema#seeAlso">
<oboInOwl:hasDbXref>http://www.w3.org/2000/01/rdf-schema#seeAlso</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>seeAlso</oboInOwl:id>
<oboInOwl:is_metadata_tag rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</oboInOwl:is_metadata_tag>
<oboInOwl:shorthand>seeAlso</oboInOwl:shorthand>
<rdfs:label>see also</rdfs:label>
</owl:AnnotationProperty>
<!-- http://www.w3.org/2002/07/owl#deprecated -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2002/07/owl#deprecated"/>
<!-- http://www.w3.org/2004/02/skos/core#closeMatch -->
<owl:AnnotationProperty rdf:about="http://www.w3.org/2004/02/skos/core#closeMatch"/>
<!--
///////////////////////////////////////////////////////////////////////////////////////
//
// Object Properties
//
///////////////////////////////////////////////////////////////////////////////////////
-->
<!-- http://purl.obolibrary.org/obo/BFO_0000050 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">is part of</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my brain is part of my body (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this day is part of this year (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a part and its whole</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">part_of</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000002"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000004"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000017"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000020"/>
<obo:RO_0040042 rdf:resource="http://purl.obolibrary.org/obo/BFO_0000031"/>
<oboInOwl:hasDbXref>BFO:0000050</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>part_of</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_gp2term"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:shorthand>part_of</oboInOwl:shorthand>
<rdfs:label>part of</rdfs:label>
<rdfs:label xml:lang="en">part of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections"/>
<rdfs:seeAlso rdf:resource="http://ontologydesignpatterns.org/wiki/Submissions:PartOf"/>
<rdfs:seeAlso>http://www.obofoundry.org/ro/#OBO_REL:part_of</rdfs:seeAlso>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000051 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002131"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000111 xml:lang="en">has part</obo:IAO_0000111>
<obo:IAO_0000112 xml:lang="en">my body has part my brain (continuant parthood, two material entities)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)</obo:IAO_0000112>
<obo:IAO_0000112 xml:lang="en">this year has part this day (occurrent parthood)</obo:IAO_0000112>
<obo:IAO_0000115 xml:lang="en">a core relation that holds between a whole and its part</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part.</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/</obo:IAO_0000116>
<obo:IAO_0000116 xml:lang="en">Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">has_part</obo:IAO_0000118>
<obo:RO_0001900 rdf:resource="http://purl.obolibrary.org/obo/RO_0001901"/>
<oboInOwl:hasDbXref>BFO:0000051</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>has_part</oboInOwl:id>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_annotation_extension"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_go_ontology"/>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/valid_for_gocam"/>
<oboInOwl:shorthand>has_part</oboInOwl:shorthand>
<rdfs:label>has part</rdfs:label>
<rdfs:label xml:lang="en">has part</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000062 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000062">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002086"/>
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000063"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000062"/>
</owl:propertyChainAxiom>
<obo:IAO_0000111 xml:lang="en">preceded by</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">x is preceded by y if and only if the time point at which y ends is before or equivalent to the time point at which x starts. Formally: x preceded by y iff ω(y) <= α(x), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">An example is: translation preceded_by transcription; aging preceded_by development (not however death preceded_by aging). Where derives_from links classes of continuants, preceded_by links classes of processes. Clearly, however, these two relations are not independent of each other. Thus if cells of type C1 derive_from cells of type C, then any cell division involving an instance of C1 in a given lineage is preceded_by cellular processes involving an instance of C. The assertion P preceded_by P1 tells us something about Ps in general: that is, it tells us something about what happened earlier, given what we know about what happened later. Thus it does not provide information pointing in the opposite direction, concerning instances of P1 in general; that is, that each is such as to be succeeded by some instance of P. Note that an assertion to the effect that P preceded_by P1 is rather weak; it tells us little about the relations between the underlying instances in virtue of which the preceded_by relation obtains. Typically we will be interested in stronger relations, for example in the relation immediately_preceded_by, or in relations which combine preceded_by with a condition to the effect that the corresponding instances of P and P1 share participants, or that their participants are connected by relations of derivation, or (as a first step along the road to a treatment of causality) that the one process in some way affects (for example, initiates or regulates) the other.</obo:IAO_0000116>
<obo:IAO_0000118 xml:lang="en">is preceded by</obo:IAO_0000118>
<obo:IAO_0000118 xml:lang="en">preceded_by</obo:IAO_0000118>
<dc:source>http://www.obofoundry.org/ro/#OBO_REL:preceded_by</dc:source>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:label xml:lang="en">preceded by</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BFO_0000063 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000063">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/RO_0002222"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BFO_0000003"/>
<owl:propertyChainAxiom rdf:parseType="Collection">
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"/>
<rdf:Description rdf:about="http://purl.obolibrary.org/obo/BFO_0000063"/>
</owl:propertyChainAxiom>
<obo:IAO_0000111 xml:lang="en">precedes</obo:IAO_0000111>
<obo:IAO_0000115 xml:lang="en">x precedes y if and only if the time point at which x ends is before or equivalent to the time point at which y starts. Formally: x precedes y iff ω(x) <= α(y), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point.</obo:IAO_0000115>
<oboInOwl:inSubset rdf:resource="http://purl.obolibrary.org/obo/ro/subsets#ro-eco"/>
<rdfs:label xml:lang="en">precedes</rdfs:label>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BSPO_0000095 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000095">
<oboInOwl:hasDbXref>BSPO:0000095</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>anatomical_relation</oboInOwl:id>
<oboInOwl:shorthand>anatomical_relation</oboInOwl:shorthand>
<rdfs:label>anatomical relation</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005860"/>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BSPO_0000096 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000096">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000099"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000096</oboInOwl:hasDbXref>
<oboInOwl:hasExactSynonym>rostral_to</oboInOwl:hasExactSynonym>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>anterior_to</oboInOwl:id>
<oboInOwl:shorthand>anterior_to</oboInOwl:shorthand>
<rdfs:label>anterior to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000039"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005863"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000096"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000097 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000097">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000100"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x distal to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000097</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>distal_to</oboInOwl:id>
<oboInOwl:shorthand>distal_to</oboInOwl:shorthand>
<rdfs:label>distal to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000040"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005867"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000097"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x distal to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal).</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000098 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000098">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000102"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000098</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>dorsal_to</oboInOwl:id>
<oboInOwl:shorthand>dorsal_to</oboInOwl:shorthand>
<rdfs:label>dorsal to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000041"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005865"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000098"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000099 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000099">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000099</oboInOwl:hasDbXref>
<oboInOwl:hasNarrowSynonym>caudal to</oboInOwl:hasNarrowSynonym>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>posterior_to</oboInOwl:id>
<oboInOwl:shorthand>posterior_to</oboInOwl:shorthand>
<rdfs:label>posterior to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000045"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005864"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000099"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000099"/>
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/>
<owl:annotatedTarget>caudal to</owl:annotatedTarget>
<oboInOwl:hasSynonymType rdf:resource="http://purl.obolibrary.org/obo/bspo#vertebrate"/>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000100 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000100">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x proximal to y iff x is closer to the point of attachment with the body than y.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000100</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>NCIT:C25236</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>proximal_to</oboInOwl:id>
<oboInOwl:shorthand>proximal_to</oboInOwl:shorthand>
<rdfs:comment>The elbow is proximal to the hand, but distal to the shoulder.</rdfs:comment>
<rdfs:label>proximal to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000047"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005868"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000100"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x proximal to y iff x is closer to the point of attachment with the body than y.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000101 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000101">
<obo:IAO_0100001>RO:0002221</obo:IAO_0100001>
<oboInOwl:hasDbXref>BSPO:0000101</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>obsolete_surrounds</oboInOwl:id>
<oboInOwl:shorthand>obsolete_surrounds</oboInOwl:shorthand>
<rdfs:label>obsolete surrounds</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000048"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005861"/>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BSPO_0000102 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000102">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000102</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>ventral_to</oboInOwl:id>
<oboInOwl:shorthand>ventral_to</oboInOwl:shorthand>
<rdfs:label>ventral to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000049"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005866"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000102"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly).</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000103 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000103">
<oboInOwl:hasDbXref>BSPO:0000103</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>vicinity_of</oboInOwl:id>
<oboInOwl:shorthand>vicinity_of</oboInOwl:shorthand>
<rdfs:label>vicinity of</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBcv_0000050"/>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005862"/>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BSPO_0000104 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000104">
<rdfs:domain rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000010"/>
<rdfs:range rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000010"/>
<obo:IAO_0000115>Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000104</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>approximately_perpendicular_to</oboInOwl:id>
<oboInOwl:shorthand>approximately_perpendicular_to</oboInOwl:shorthand>
<rdfs:label>approximately perpendicular to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000104"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Crosses at an angle that is 90 degrees, or close to 90 degrees. In any non-linear organism, the main axes are rarely perpendicular when taken through the organism as a whole.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000105 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000105">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<owl:propertyDisjointWith rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000106"/>
<obo:IAO_0000115>On the same side as. For example, the left arm is ipsilateral to the left leg.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000105</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>ipsilateral_to</oboInOwl:id>
<oboInOwl:shorthand>ipsilateral_to</oboInOwl:shorthand>
<rdfs:label>ipsilateral to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005850"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000105"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>On the same side as. For example, the left arm is ipsilateral to the left leg.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000106 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000106">
<rdfs:subPropertyOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000113"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#SymmetricProperty"/>
<obo:IAO_0000115>On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg).</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000106</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>contralateral_to</oboInOwl:id>
<oboInOwl:shorthand>contralateral_to</oboInOwl:shorthand>
<rdfs:label>contralateral to</rdfs:label>
<rdfs:seeAlso rdf:resource="http://purl.obolibrary.org/obo/FBql_00005851"/>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000106"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>On the opposite side from. For example, the left arm is contralateral to the right arm (and the right leg).</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000107 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000107">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000108"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000107</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>deep_to</oboInOwl:id>
<oboInOwl:shorthand>deep_to</oboInOwl:shorthand>
<rdfs:label>deep to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000107"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Further away from the surface of the organism. Thus, the muscular layer is deep to the skin, but superficial to the intestines.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000108 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000108">
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000108</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>superficial_to</oboInOwl:id>
<oboInOwl:shorthand>superficial_to</oboInOwl:shorthand>
<rdfs:label>superficial to</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000108"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Near the outer surface of the organism. Thus, skin is superficial to the muscle layer.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>
<!-- http://purl.obolibrary.org/obo/BSPO_0000109 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000109">
<obo:IAO_0100001>RO:0002219</obo:IAO_0100001>
<oboInOwl:hasDbXref>BSPO:0000109</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>obsolete_surrounded_by</oboInOwl:id>
<oboInOwl:shorthand>obsolete_surrounded_by</oboInOwl:shorthand>
<rdfs:label>obsolete surrounded_by</rdfs:label>
<owl:deprecated rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</owl:deprecated>
</owl:ObjectProperty>
<!-- http://purl.obolibrary.org/obo/BSPO_0000110 -->
<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BSPO_0000110">
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000111"/>
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/>
<obo:IAO_0000115>Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is left of some instance y of Y, and there exists some organism o such that x part of o and y part of o.</obo:IAO_0000115>
<oboInOwl:hasDbXref>BSPO:0000110</oboInOwl:hasDbXref>
<oboInOwl:hasOBONamespace>spatial</oboInOwl:hasOBONamespace>
<oboInOwl:id>left_of</oboInOwl:id>
<oboInOwl:shorthand>left_of</oboInOwl:shorthand>
<rdfs:label>left of</rdfs:label>
</owl:ObjectProperty>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/BSPO_0000110"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Closer to the left side of the organism. Example: The dorsal fin is right of the left pectoral fin, but is left of the right eye. On the type level: X left of Y <=> every instance x of X is left of some instance y of Y, and there exists some organism o such that x part of o and y part of o.</owl:annotatedTarget>
<oboInOwl:hasDbXref>BSPO:cjm</oboInOwl:hasDbXref>
</owl:Axiom>