Merge pull request #1979 from obophenotype/1908_upper_level_slim

Addresses #1908 to create an upper cell type slim
obophenotype · Jun 21, 2023 · ca2ca1a · ca2ca1a
2 parents efca2e5 + 53dbe52
commit ca2ca1a
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Showing 9 changed files with 200 additions and 5 deletions.
diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md
@@ -39,3 +39,4 @@ These are the components in CL
 | mappings.owl | None |
 | blood_and_immune_upper_slim.owl | None |
 | eye_upper_slim.owl | None |
+| general_cell_types_upper_slim.owl | None |
diff --git a/src/ontology/Makefile b/src/ontology/Makefile
@@ -50,7 +50,7 @@ OBODATE ?= $(shell date +'%d:%m:%Y %H:%M')
 VERSION= $(TODAY)
 ANNOTATE_ONTOLOGY_VERSION = annotate -V $(ONTBASE)/releases/$(VERSION)/$@ --annotation owl:versionInfo $(VERSION)
 ANNOTATE_CONVERT_FILE = annotate --ontology-iri $(ONTBASE)/$@ $(ANNOTATE_ONTOLOGY_VERSION) convert -f ofn --output $@.tmp.owl && mv $@.tmp.owl $@
-OTHER_SRC = $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/blood_and_immune_upper_slim.owl $(COMPONENTSDIR)/eye_upper_slim.owl 
+OTHER_SRC = $(PATTERNDIR)/definitions.owl $(COMPONENTSDIR)/hra_subset.owl $(COMPONENTSDIR)/mappings.owl $(COMPONENTSDIR)/blood_and_immune_upper_slim.owl $(COMPONENTSDIR)/eye_upper_slim.owl $(COMPONENTSDIR)/general_cell_types_upper_slim.owl 
 ONTOLOGYTERMS = $(TMPDIR)/ontologyterms.txt
 EDIT_PREPROCESSED = $(TMPDIR)/$(ONT)-preprocess.owl
 PATTERNDIR= ../patterns
@@ -128,7 +128,7 @@ all_imports: $(IMPORT_FILES)
 # ----------------------------------------
 
 
-SUBSETS = BDS_subset blood_and_immune_upper_slim eye_upper_slim
+SUBSETS = BDS_subset blood_and_immune_upper_slim eye_upper_slim general_cell_types_upper_slim
 
 SUBSET_ROOTS = $(patsubst %, $(SUBSETDIR)/%, $(SUBSETS))
 SUBSET_FILES = $(foreach n,$(SUBSET_ROOTS), $(foreach f,$(FORMATS_INCL_TSV), $(n).$(f)))
@@ -415,6 +415,14 @@ $(COMPONENTSDIR)/eye_upper_slim.owl: $(TEMPLATEDIR)/eye_upper_slim.csv
  $(ANNOTATE_CONVERT_FILE); fi
 
 .PRECIOUS: $(COMPONENTSDIR)/eye_upper_slim.owl
+
+
+$(COMPONENTSDIR)/general_cell_types_upper_slim.owl: $(TEMPLATEDIR)/general_cell_types_upper_slim.csv
+ if [ $(COMP) = true ] ; then $(ROBOT) template \
+ $(patsubst %, --template %, $^) \
+ $(ANNOTATE_CONVERT_FILE); fi
+
+.PRECIOUS: $(COMPONENTSDIR)/general_cell_types_upper_slim.owl
 # ----------------------------------------
 # Mirroring upstream ontologies
 # ----------------------------------------

diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml
@@ -17,5 +17,6 @@
  <uri name="http://purl.obolibrary.org/obo/cl/components/mappings.owl" uri="components/mappings.owl"/>
  <uri name="http://purl.obolibrary.org/obo/cl/components/blood_and_immune_upper_slim.owl" uri="components/blood_and_immune_upper_slim.owl"/>
  <uri name="http://purl.obolibrary.org/obo/cl/components/eye_upper_slim.owl" uri="components/eye_upper_slim.owl"/>
+ <uri name="http://purl.obolibrary.org/obo/cl/components/general_cell_types_upper_slim.owl" uri="components/general_cell_types_upper_slim.owl"/>
  <group id="Folder Repository, directory=, recursive=false, Auto-Update=false, version=2" prefer="public" xml:base=""/>
 </catalog>
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -11,6 +11,7 @@ Prefix(oboInOwl:=<http://www.geneontology.org/formats/oboInOwl#>)
 Ontology(<http://purl.obolibrary.org/obo/cl.owl>
 Import(<http://purl.obolibrary.org/obo/cl/components/blood_and_immune_upper_slim.owl>)
 Import(<http://purl.obolibrary.org/obo/cl/components/eye_upper_slim.owl>)
+Import(<http://purl.obolibrary.org/obo/cl/components/general_cell_types_upper_slim.owl>)
 Import(<http://purl.obolibrary.org/obo/cl/components/hra_subset.owl>)
 Import(<http://purl.obolibrary.org/obo/cl/components/mappings.owl>)
 Import(<http://purl.obolibrary.org/obo/cl/imports/merged_import.owl>)
@@ -3126,6 +3127,7 @@ Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/cl#abbreviation>)
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/cl#added_for_HCA>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/cl#blood_and_immune_upper_slim>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/cl#eye_upper_slim>))
+Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/pato#location_grouping>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/uberon#HUMAN_PREFERRED>))
 Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/uberon#LATIN>))
@@ -3207,6 +3209,12 @@ AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/cl#eye_upper_sl
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/cl#eye_upper_slim> "eye_upper_slim")
 SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/cl#eye_upper_slim> oboInOwl:SubsetProperty)
 
+# Annotation Property: <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim> (general_cell_types_upper_slim)
+
+AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim> "a subset of general classes of cell types in the cell ontology.")
+AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim> "general_cell_types_upper_slim")
+SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim> oboInOwl:SubsetProperty)
+
 # Annotation Property: <http://purl.obolibrary.org/obo/pato#location_grouping> (<http://purl.obolibrary.org/obo/pato#location_grouping>)
 
 SubAnnotationPropertyOf(<http://purl.obolibrary.org/obo/pato#location_grouping> oboInOwl:SubsetProperty)

diff --git a/src/ontology/cl-odk.yaml b/src/ontology/cl-odk.yaml
@@ -30,6 +30,7 @@ subset_group:
  - id: BDS_subset
  - id: blood_and_immune_upper_slim
  - id: eye_upper_slim
+ - id: general_cell_types_upper_slim
 import_group:
  use_base_merging: TRUE
  slme_individuals: exclude
@@ -103,4 +104,8 @@ components:
  use_template: True
  templates:
  - eye_upper_slim.csv
+ - filename: general_cell_types_upper_slim.owl
+ use_template: True
+ templates:
+ - general_cell_types_upper_slim.csv
 
diff --git a/src/ontology/cl.Makefile b/src/ontology/cl.Makefile
@@ -272,8 +272,9 @@ deploy_release:
 
 TERM_hematopoietic= CL:0000988
 TERM_eye= UBERON:0000970
+TERM_general = CL:0000548
 
-SLIM_TEMPLATES= blood_and_immune eye
+SLIM_TEMPLATES= blood_and_immune eye general_cell_types
 SLIM_REPORTS = $(foreach n,$(SLIM_TEMPLATES),$(REPORTDIR)/$(n)_upper_slim.csv)
 
 .PHONY: slim_coverage
@@ -291,4 +292,8 @@ $(REPORTDIR)/eye_upper_slim.csv: $(TEMPLATEDIR)/eye_upper_slim.csv
  $(eval TERM_ID := $(TERM_eye))
  $(COVERAGECMD)
 
+$(REPORTDIR)/general_cell_types_upper_slim.csv: $(TEMPLATEDIR)/general_cell_types_upper_slim.csv
+ $(eval TERM_ID := $(TERM_general))
+ $(COVERAGECMD)
+
 test: slim_coverage
diff --git a/src/ontology/components/eye_upper_slim.owl b/src/ontology/components/eye_upper_slim.owl
@@ -7,8 +7,8 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/cl/components/eye_upper_slim.owl>
-<http://purl.obolibrary.org/obo/cl/releases/2023-05-19/components/eye_upper_slim.owl>
-Annotation(owl:versionInfo "2023-05-19")
+<http://purl.obolibrary.org/obo/cl/releases/2023-06-21/components/eye_upper_slim.owl>
+Annotation(owl:versionInfo "2023-06-21")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000132>))
 Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000287>))

diff --git a/src/ontology/components/general_cell_types_upper_slim.owl b/src/ontology/components/general_cell_types_upper_slim.owl
@@ -0,0 +1,141 @@
+Prefix(:=<http://purl.obolibrary.org/obo/cl/components/general_cell_types_upper_slim.owl#>)
+Prefix(owl:=<http://www.w3.org/2002/07/owl#>)
+Prefix(rdf:=<http://www.w3.org/1999/02/22-rdf-syntax-ns#>)
+Prefix(xml:=<http://www.w3.org/XML/1998/namespace>)
+Prefix(xsd:=<http://www.w3.org/2001/XMLSchema#>)
+Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
+
+
+Ontology(<http://purl.obolibrary.org/obo/cl/components/general_cell_types_upper_slim.owl>
+<http://purl.obolibrary.org/obo/cl/releases/2023-06-21/components/general_cell_types_upper_slim.owl>
+Annotation(owl:versionInfo "2023-06-21")
+
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000034>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000039>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000057>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000066>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000081>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000084>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000125>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000136>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000148>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000152>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000163>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000188>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000192>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000235>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000236>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000349>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000451>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000499>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000540>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000576>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000623>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0000746>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0001035>))
+Declaration(Class(<http://purl.obolibrary.org/obo/CL_0009004>))
+Declaration(AnnotationProperty(<http://www.geneontology.org/formats/oboInOwl#inSubset>))
+
+
+############################
+# Classes
+############################
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000034> (<http://purl.obolibrary.org/obo/CL_0000034>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000034> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000039> (<http://purl.obolibrary.org/obo/CL_0000039>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000039> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000057> (<http://purl.obolibrary.org/obo/CL_0000057>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000057> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000066> (<http://purl.obolibrary.org/obo/CL_0000066>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000066> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000081> (<http://purl.obolibrary.org/obo/CL_0000081>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000081> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000084> (<http://purl.obolibrary.org/obo/CL_0000084>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000084> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000125> (<http://purl.obolibrary.org/obo/CL_0000125>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000125> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000136> (<http://purl.obolibrary.org/obo/CL_0000136>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000136> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000148> (<http://purl.obolibrary.org/obo/CL_0000148>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000148> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000152> (<http://purl.obolibrary.org/obo/CL_0000152>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000152> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000163> (<http://purl.obolibrary.org/obo/CL_0000163>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000163> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000188> (<http://purl.obolibrary.org/obo/CL_0000188>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000188> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000192> (<http://purl.obolibrary.org/obo/CL_0000192>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000192> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000235> (<http://purl.obolibrary.org/obo/CL_0000235>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000235> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000236> (<http://purl.obolibrary.org/obo/CL_0000236>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000236> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000349> (<http://purl.obolibrary.org/obo/CL_0000349>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000349> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000451> (<http://purl.obolibrary.org/obo/CL_0000451>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000451> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000499> (<http://purl.obolibrary.org/obo/CL_0000499>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000499> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000540> (<http://purl.obolibrary.org/obo/CL_0000540>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000540> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000576> (<http://purl.obolibrary.org/obo/CL_0000576>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000576> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000623> (<http://purl.obolibrary.org/obo/CL_0000623>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000623> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0000746> (<http://purl.obolibrary.org/obo/CL_0000746>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0000746> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0001035> (<http://purl.obolibrary.org/obo/CL_0001035>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0001035> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+# Class: <http://purl.obolibrary.org/obo/CL_0009004> (<http://purl.obolibrary.org/obo/CL_0009004>)
+
+AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/CL_0009004> <http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim>)
+
+
+)
diff --git a/src/templates/general_cell_types_upper_slim.csv b/src/templates/general_cell_types_upper_slim.csv
@@ -0,0 +1,26 @@
+ID,subset,label
+ID,AI oboInOwl:inSubset,
+CL:0000540,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,neuron
+CL:0000125,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,glial cell
+CL:0000066,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,epithelial cell
+CL:0000152,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,exocrine cell
+CL:0000057,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,fibroblast
+CL:0000235,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,macrophage
+CL:0000084,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,T cell
+CL:0000236,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,B cell
+CL:0000623,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,natural killer cell
+CL:0000451,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,dendritic cell
+CL:0000192,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,smooth muscle cell
+CL:0000746,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,cardiac muscle cell
+CL:0000188,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,cardiac muscle cell
+CL:0000163,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,endocrine cell
+CL:0000148,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,melanocyte
+CL:0009004,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,retinal cell
+CL:0000349,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,extraembryonic cell
+CL:0000081,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,blood cell
+CL:0000576,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,monocyte
+CL:0000039,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,germ line cell
+CL:0000136,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,fat cell
+CL:0000499,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,stromal cell
+CL:0001035,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,bone cell
+CL:0000034,http://purl.obolibrary.org/obo/cl#general_cell_types_upper_slim,stem cell